rna1799, rna1799 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1799
Unique Name	rna1799
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2097
Alignment location	CM002458.1:177990..179601 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100095g7.10163.mrna
Orig protein id	gnl\|cribi\|Naga_100095g7.10163
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:177990..179601 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100095g7	gene1728	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1799	rna1799-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28871.1	cds1795	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:177990..179601+
coding sequence from alignment at CM002458.1:177990..179601+

mRNA sequence

>rna1799 ID=rna1799|Name=rna1799|organism=Nannochloropsis gaditana|type=mRNA|length=2097bp
ATGGCGGACGAAACCCAGCTTATGCCGTCTCAAAGACGAGGGTGGCTCCG
AAATGTTTTCGCGCCCGTCACTCTCGTGACATCTTTGGTCGCAGTGGCTG
TCGCGGTCTACTTCGTCCTAGGCTCGAAGTCTCTGATCTATCGCCGTCCC
GGGTCCTCATCAAGCTTGGAATCTGGGAAAACTTCCATGCAATGTAAAGT
CTACCAGGACCCAGCCGATCCGACGTCGACGATCAACATGCCTAGTAAGG
AAGTGTTTGCCAGCAATCTCACGCAATTTCCGAGCGGTTTTGCATGGGGC
GCCGCCACGAGTGCCTACCAGATCGAAGGGGCATGGGACGAGGACGGGCG
AGGGCTATCGATTTGGGACACATTCAGTCATACCAAGGGGAAAGTCGAGA
ACAACGAGAACGGGGACGTGGCGTGCGACCACTACCACCTGTATAAAGAG
GACGTGGCCGTGATGAAGGCACTGGGAATCACCAACTACCGCTTCTCCAT
CTCTTGGCCCCGGATTTTACCCAGCGGTACCGGAAATGTGAATTTTAAGG
GCCTGGAATTTTACAGCGACCTCGTTGACGAGCTGCTAGCGAACGGTATT
GAACCCTACGCGACGCTGTACCACTGGGACCTACCTCAAGCCCTTCAAGA
CAAGCACGACGGCTGGTACTCCCCGGTCACGAGCGATGCCTTCGCTGAGT
ACGCGGACGTCGTCTTTGACGCTCTGGGAGATCGTGTTAAATATTGGATC
ACCCTCAATGAGCCTTGGTGCTCGGCATTATTGGGGTATGGCATTGGGGT
ACATGCTCCTGGAATCAAGGACATCAAGTCAGGCGCCTACTTGGCGGGTC
ATCACCTCCTCCTCGCTCACTCCAAAGCGGTCAAACTGTACCGAGAGAAA
TACCAGGTCCTGCAGGGGGGGAAGATCGGCATCACCATCAACAGCGACTT
CAAGCAGTATTATTGCGACAACACTTTGGACAAGGCGGCGGCAGAGCGGT
CGCAGATTTTCGTGATGGGCTGGTTCGCCGACCCGGTCTTCCTGGGCGAC
TACCCGGAGGAAATGCGCAAGACGTGCGGGGATCGCTTGCCGTCTTTCAC
GGAGGAAGAGAAGGCGGACCTGAAGGGCTCGTTGGATTTCCTGGGGCTCA
ATCACTATACTACGGCCTTGGTGGCCTCCCCCCTCTTCCGGACGAACGGT
GGGAACTACTACACCGACATGGGCACCATGGATTCCTCCGACAAGTCTTG
GCCTGTAGGGGAGTCCGGGTGGTTGAAAGATGTTCCCTGGGGGTTGCGGA
AGCTCTTGGTCTGGATTCAGAACAGGTATGACGATCCCCTTATCTACATA
ACGGAGAATGGTGTGTCGGGGCCGGGGGAGAGCAGCGTCAAGAAGGACAG
CGAAGGGTTGGACGATACTTTTCGACAGAGCTTCATGCAGGGCTATATAG
GCGAGCTGTACAAGGCCATAGCCTATGACAAGGTCCAGGTGGGCGGTTAC
TTCTACTGGTCGCTGATGGATAATTTCGAATGGGCCGATGGTTTTCGGCC
TCGTTTTGGCCTGGTGCGGGTGAATTTTACCAGCCAAGCACGCTTCCCCA
AGGAAAGCTCCTTCATGTACCAGGAAATGATGGCACGGGTGACCCCTCCC
CCCCCCGAGCCGGAGCCCGTCGTCCCGACCGTGCCCGCTGTCCCTGCCGC
TGCCGAAGGCACCGGGCCTGTTCCTGTAGCGGGGGAAGACCCTGGGGGCA
TGGCGGGGGGAGGGGAAGCCGCTGCCGACAGCGAAGACGCAGTAGGGGTG
GATGGCGACGTGTCGATCGAAGAGGGAGCTGCAGGGGATGGGGCAGCCAT
AGGCGCCGGCGAGTCGCCCGCCACAGAAGAAAGGGGCTCAGGGCTGGACC
CTCTGGCCTCCATTCCCCCTGAGGCTCCTGAAGATGGGTTGCCAAGCACG
GACGCCGCAGTAGCTGCAGCAAGTGAGGCCAAGTTGCAGGTGAAGGAAGG
CGGAAACCCACAGGAAGAGGAGGAGGCAGGGCGGGAGGCAGTGGTGGAGG
CGCTACCAGAGACAAGAGAGGCCGATGCCTGGAATAGAAACTTGTGA

protein sequence of rna1799

>rna1799-protein ID=rna1799-protein|Name=rna1799|organism=Nannochloropsis gaditana|type=polypeptide|length=315bp
MQTTSTPIRPPIGIFWRCQKISMGNHDHASFESPSTPAAASFPYAPWRRS
LRHSKRPRERDKKEDVNKNMAETFLPLCLWDFEEEGEVEERTVVVEEEVK
EAYGEDTRLDECSTEGQIASNVTEPDEEWMLADTSKFDEKATSIQLRKEG
LPIYVTFGAFKGVSLPALGRMEGGRQYLDQFLARKPGWFERGSVPANMAL
LRSLSRLRLLRYVTDLNGNVVPATRMVRNWELRQERNQQASRETRCLHRQ
RQRRRAKAALRKGSVALDRHMESEVADESRKDAATARGGDKARVPMRPPP
PRVVRKGTGYQTPPR

mRNA from alignment at CM002458.1:177990..179601+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1799 ID=rna1799|Name=rna1799|organism=Nannochloropsis gaditana|type=mRNA|length=1612bp|location=Sequence derived from alignment at CM002458.1:177990..179601+ (Nannochloropsis gaditana)
GTAGCTCCCACAACAATGCAAACCACCTCAACCCCAATCCGACCACCAAT
AGGAATATTTTGGCGTTGTCAGAAGATTTCGATGGGGAACCACGACCATG
CTTCCTTCGAAAGCCCTTCCACGCCGGCCGCAGCTTCCTTCCCATATGCC
CCCTGGCGCCGGTCCTTGCGACACTCCAAGCGCCCTCGAGAAAGAGATAA
GAAAGAGGATGTAAATAAAAATATGGCAGAGACGTTCTTGCCTCTCTGTC
TTTGGGACtttgaagaagagggggaggttgaggaaagAACTGttgtcgtg
gaggaagaggtgaagGAAGCTTATGGGGAGGATACGAGGCTCGACGAGTG
CAGTACTGAAGGACAAATTGCCAGTAACGTAACCGAACCAGATGAGGAAT
GGATGCTCGCGGACACATCAAAATTTGACGAAAAGGCTACGTCTATTCAA
TTGCGTAAGGAAGGATTGCCGATTTACGTGACCTTCGGCGCATTCAAGGG
AGTCagcctgcccgccctcggacGCATGGAGGGTGGTCGTCGTAAGTCAC
TCCCTGGTGGTATGTGGGCTTGCATGCGTGTGCTGGAGGCATGATATACA
TACATCGAGGGAATCATGTGCAATCCCGCAGAATGATCCAGATCGATGTA
GACAACTTGACGGGAATTTAAAGGAGGAAGTAGGCCCCCTATAGGACAGG
GAAAACAAGTCAGGCTTGCGCCTGGAACGCTCCCCTTGTCTCTCCCTTAC
GACCTCTCTTTTGTCACTGCCCGACCCATATCATTGCCACAGAATATCTC
GACCAGTTCTTGGCCCGTAAACCGGGTTGGTTCGAGCGTGGCTCGGTCCC
CGCGAACATGgctctccttcgctccctctctcgcctccgcctcctccggt
ACGTGACTGACCTCAACGGTAACGTCGTGCCCGCCACACGCATGGTCCGA
AATTGGGAGCTGAGACAGGAAAGAAACCAGCAAGCCTCCCGAGAAACACG
CTGCCTGCACCGACAGAGGCAGCGACGACGGGCCAAAGCAGCGCTGAGAA
AGGGCTCGGTCGCTTTAGACAGACACATGGAAAGCGAGGTGGCGGACGAG
AGCAGAAAAGATGCGGCCACGGCGAGAGGTGGGGACAAAGCACGTGTACC
AATgaggccaccgccgccgcggGTGGTACGGAAAGGTACTGGCTACCAGA
CACCGCCGCGCTGATCAGGCGGAAGGGTCACTTGCAAACCGTGGGAAGAC
GCCCGGTCCACCGATCCGGTTTTCAAACCTTCGGAGACCGTGATTTCCCA
ATAAACGTGCTGTAAACATCCCCAAGACGATGCTCTCCCTTCGGGGGGTC
CCTCCAGTCTCGAACGAGGCCTTGACGCCCTTTATATGGGGGACAATTTC
CTGCGAAAACCTGCGTCATTGCGACTCAAAATCAAGTACAGCTCCTCAAA
GATGATAGATATGCCCTTGTCCACGTAAATCAAGATCTGTGCATGCATTA
AATCAATTGTGGTCGTGTCGCTTTTCAAGTGATCCATCTTATTTGCCAGC
CCGTAATTATCTAACCATACAAAGGAAAGACAATCGAACAGTAGCATTTA
GCTATCTACGCC

Coding sequence (CDS) from alignment at CM002458.1:177990..179601+

>rna1799 ID=rna1799|Name=rna1799|organism=Nannochloropsis gaditana|type=CDS|length=1896bp|location=Sequence derived from alignment at CM002458.1:177990..179601+ (Nannochloropsis gaditana)
ATGCAAACCACCTCAACCCCAATCCGACCACCAATAGGAATATTTTGGCG
TTGTCAGAAGATTTCGATGGGGAACCACGACCATGCTTCCTTCGAAAGCC
CTTCCACGCCGGCCGCAGCTTCCTTCCCATATGCCCCCTGGCGCCGGTCC
TTGCGACACTCCAAGCGCCCTCGAGAAAGAGATAAGAAAGAGGATGTAAA
TAAAAATATGGCAGAGACGTTCTTGCCTCTCTGTCTTTGGGACtttgaag
aagagggggaggttgaggaaagAACTGttgtcgtggaggaagaggtgaag
GAAGCTTATGGGGAGGATACGAGGCTCGACGAGTGCAGTACTGAAGGACA
AATTGCCAGTAACGTAACCGAACCAGATGAGGAATGGATGCTCGCGGACA
CATCAAAATTTGACGAAAAGGCTACGTCTATTCAATTGCGTAAGGAAGGA
TTGCCGATTTACGTGACCTTCGGCGCATTCAAGGGAGTCagcctgcccgc
cctcggacGCATGGAGGGTGGTCGTCAATATCTCGACCAGTTCTTGGCCC
GTAAACCGGGTTGGTTCGAGCGTGGCTCGGTCCCCGCGAACATGgctctc
cttcgctccctctctcgcctccgcctcctccggtACGTGACTGACCTCAA
CGGTAACGTCGTGCCCGCCACACGCATGGTCCGAAATTGGGAGCTGAGAC
AGGAAAGAAACCAGCAAGCCTCCCGAGAAACACGCTGCCTGCACCGACAG
AGGCAGCGACGACGGGCCAAAGCAGCGCTGAGAAAGGGCTCGGTCGCTTT
AGACAGACACATGGAAAGCGAGGTGGCGGACGAGAGCAGAAAAGATGCGG
CCACGGCGAGAGGTGGGGACAAAGCACGTGTACCAATgaggccaccgccg
ccgcggGTGGTACGGAAAGGTACTGGCTACCAGACACCGCCGCGCTGAAT
GCAAACCACCTCAACCCCAATCCGACCACCAATAGGAATATTTTGGCGTT
GTCAGAAGATTTCGATGGGGAACCACGACCATGCTTCCTTCGAAAGCCCT
TCCACGCCGGCCGCAGCTTCCTTCCCATATGCCCCCTGGCGCCGGTCCTT
GCGACACTCCAAGCGCCCTCGAGAAAGAGATAAGAAAGAGGATGTAAATA
AAAATATGGCAGAGACGTTCTTGCCTCTCTGTCTTTGGGACtttgaagaa
gagggggaggttgaggaaagAACTGttgtcgtggaggaagaggtgaagGA
AGCTTATGGGGAGGATACGAGGCTCGACGAGTGCAGTACTGAAGGACAAA
TTGCCAGTAACGTAACCGAACCAGATGAGGAATGGATGCTCGCGGACACA
TCAAAATTTGACGAAAAGGCTACGTCTATTCAATTGCGTAAGGAAGGATT
GCCGATTTACGTGACCTTCGGCGCATTCAAGGGAGTCagcctgcccgccc
tcggacGCATGGAGGGTGGTCGTCAATATCTCGACCAGTTCTTGGCCCGT
AAACCGGGTTGGTTCGAGCGTGGCTCGGTCCCCGCGAACATGgctctcct
tcgctccctctctcgcctccgcctcctccggtACGTGACTGACCTCAACG
GTAACGTCGTGCCCGCCACACGCATGGTCCGAAATTGGGAGCTGAGACAG
GAAAGAAACCAGCAAGCCTCCCGAGAAACACGCTGCCTGCACCGACAGAG
GCAGCGACGACGGGCCAAAGCAGCGCTGAGAAAGGGCTCGGTCGCTTTAG
ACAGACACATGGAAAGCGAGGTGGCGGACGAGAGCAGAAAAGATGCGGCC
ACGGCGAGAGGTGGGGACAAAGCACGTGTACCAATgaggccaccgccgcc
gcggGTGGTACGGAAAGGTACTGGCTACCAGACACCGCCGCGCTGA

Synonyms

Publications