rna1792, rna1792 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1792
Unique Name	rna1792
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2112
Alignment location	CM002458.1:135528..138134 -

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Properties


Property Name	Value
Product	tor signaling pathway regulator
Orig transcript id	gnl\|cribi\|Naga_100269g2.9911.mrna
Orig protein id	gnl\|cribi\|Naga_100269g2.9911
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:135528..138134 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100269g2	gene1721	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28886.1	cds1788	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1792	rna1792-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:135528..138134-
coding sequence from alignment at CM002458.1:135528..138134-

mRNA sequence

>rna1792 ID=rna1792|Name=rna1792|organism=Nannochloropsis gaditana|type=mRNA|length=2112bp
GTACTGTGGGTCCTTGCAAGCCAGCGCGGACCGCGTCGGGGGGGGGGAGG
GAGCACCGTCTCTGCCCTCTTTGTCCCGGTCGACAGGCGGCTACCAAAGA
TCCGGATCCAAACGCGCCAGCGGGATGTCCTGCAGGACAAGCGCATTCTT
GTCGCCGTGGACGCCTGGCCGGCAGACTCGCGATATCCCGCCGGTCATTA
CATCAAAACGCTAGGGTCTGCCGGGGATAAGGAGGTGGAGACAGAGGTGC
TTTTACACGAGTACGACATCCCCTGGGAGCCTTTTTCAGAAAAGGTGATG
GCTTGCCTCCCTCCCTCCGATTGGAGCATGACACCTGAGAATACCAAAGG
GAGGGTCGACCTCCGGAAGCTTTCTGTCATGAGCATCGATCCACCGGGGT
GCAAGGACATCGACGACGCTCTCCATTGCACGCCCTTGCCCAATGGCAAT
TTCGCGGTCGGGGTCCACATCGCCGACGTTTCCTACTTTGTCCAGCCAGG
GAGTGCGTTGGACGAGGAGGCCGCAAACCGCTCGACGAGCACGTACCTGG
TTCAAAGACGCTTGGACATGCTGCCCAAGCTCCTGACTGAGACGCTGTGC
TCTTTGACGAGTACCTCCGATCACTTTGCCTTCAGTGTCCTCTGGGAGTT
GACTCCAAACGCAGACATCGTCTCTGTAGATTTCTGCAAAAGCATCATTC
GGTCCGTCGCGTCGTTGTCGTATCAAGAAGCCCAGAACATCCACGACGAT
CCCCATGCCCAGGATGCTGTTGCGCAGGGTATTAGAGGGTTGAACAGTCT
GGCTAAAAAGCTTCGAGCGAAAAGGATGGAGGCAGGGGCGCTCATGTTAG
CCTCCACAGAAGTGAAGTTTGTCTTGGATGCGGATAGCTCCGATCCGTTG
GATGTACAGATGTACCAGCTTAAAGAGACGCATGCACTCGTGGAAGAATT
CATGCTTTTGGCTAACATCACGGTCGGGAAGAAAATTCTTCGGCATTATC
CTACATTGAGCCTGCTCCGCCGGCATCCGTCCCCCTCCCGAGAACGTTTC
GAGTCCCTCATTGCTGCCGCGGCGTCTCGAGGCTTCTCGCTCTGTGTTGA
TGACAGCAGTGAACTCCAGCAATCGCTGGACGCATCCGTGGACAAGGACG
ACCCGAACATCAACAAAATCATACGCATTCTCGCCACCCGGTGCATGTTT
CCTGCCCAATACTTCTGCTCAGGCGAGTGCTCACAAGATGAATGGCACCA
CTATGGTCTCGCCGCACCGATCTACACACATTTCACAAGTCCCATTCGCC
GCTATGCGGACATTGTGGTCCATCGTCTCTTGGCGGCCTCAATTGGAGTT
GCACCGTTGCCAGAGGCCCTTCTGGATAAGGGGGGAATGCATGACCTCGC
TGAGAACATGAATCGCAGGCACAAGGCGGCACAGAACGCAGGACGTGGTT
CAACGGCGTTTCACACGGTCCTGTTTTTCAAAGAGAATCCCGTCGAGGCG
GAAGACGCGTATATTCTGCGCATCTTGGAGACACGGTTGATTGTGCTGGT
GCCTCGCTTTGGGATCGAGGGTACAATTGATCTGAAGGGGCTGGCCGACC
AAGGCTTGTTAAATCGACAAGCGGATGGGCATCGAATCACGTGTCCAGGG
AAAGTTGAGCTCAAGGTGTTCGACAAAATCCGGGTAGGTATCCGTGTGGC
GGAAGGGAAAGCTGCACACCGTGACGCGGTGGTTTATACGCTGCAGTCTC
CTCGCATCCCAGGCCTAGACGTGGAAAGAGAAGAAGGGGCAAGAAATGTG
GAAGGAGGAGGGAAAAAGAGGAAAAGTGCGGATGCCAAGAAAAAATAAAT
GGAAAAGAAAAGGCAGGGAGGTAGGGGGGAACGAATGTGGCTTGAGGATG
GGAAGACGGATGAGACACGATAGAGAGATCCAGTGTGTATGACTTGATAT
GGGAAGGCAGGGGTTGAAATTCCTACTATACAATTGGTGGTACGCTTTCT
GCTTGAGTTGACTCCCAAGCCACTTTTGTTTTCCCCTAGCCTTGATTTTC
CATCGTGCTATCTTTCTTCATGGCGTGGATTTTATACTAAAGTTAACATG
ATGTCGCTCGAC

protein sequence of rna1792

>rna1792-protein ID=rna1792-protein|Name=rna1792|organism=Nannochloropsis gaditana|type=polypeptide|length=428bp
MDAKLAALSLDPKYIASTASVHVQDSLLERPLCTLFQEGQALVERLTHEG
GPSNPSPSPLDASARAGNDDIRQGLTLFNEISRRVHSLGLLSSNEELDDV
ATADLKYVLVDFYLGILHSQVPLEGEKGDMGKRQIGIGKALTSFETYMQR
CEQLGLLKGEDQQAWAGARAEEEEEGSADGHDDDQRRRAVLPTKGIGVSS
GNMNVQRTQKIERFRKLKTARERLRVLNHLLVKVKDSTKEAGAGEQGKNR
EEPSGEEEELERERSKLWIKMGVWKVLDEWTMLKQEQEILAMMRTQGGER
RKEEKGTQGSSARGGVQVTHIDKTGPGGQLRIRQEDLRARVFQPGYTLPT
VSLEEFAAQELAAAQERKAKEERRAGNLSEPRRYAQLEEEGKEDDARLVE
EAAYQDRTWDDWKDAHPRGSGNKLGKRF

mRNA from alignment at CM002458.1:135528..138134-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1792 ID=rna1792|Name=rna1792|organism=Nannochloropsis gaditana|type=mRNA|length=2607bp|location=Sequence derived from alignment at CM002458.1:135528..138134- (Nannochloropsis gaditana)
CTCTTCAAGTACGCAGCTAGGAGGGGGAAAAATCACGTCCAACCAGAAAG
CTCTGTATTAAAGGTCGACAAGTCCTATATCCGTCCAGCAATGGGAATGA
TGGGCCTAATGATGCGACATTTGCGCACGTACATGACCACAAGCCACAAT
GTGGTCGGCGGATACTGAGAGGGTCTGAAAGTTCGGGCGAGTCTGAGGAA
AACTAACAGATCACAGAGACACAATCCATGTGCTTGCAACGCCTCTTTCC
ATGACCAGGATGTTGAATTTTCACCTCTTTAACATTATCCAAATGTGAGA
AATAAAAGACTGGCACTCGATGTGCAAATCTTACATGCTAGGAAACGACG
TACGAGAGAAGCAGAACCACCTCCCTGTGAAAGACTAGTATGTGGCGTCC
TTTTGAGTGACTGTAACACGCCAAGTGTTCATTTTTTGGAGTTCACACCT
CCTGTGGGAGAATTAAACCTTGTGTCGGTACAATAATTTTTCTCAATGCG
TGTTTTCTTGGTTTTTGGCATTTCAAGTACGGTATCCTGGAGGCGCCGGG
CCCCTGGTGCTATAAGGGAATAGTCTGAACGTTCTCCTTCAACGCTCCTC
TCGGACAAAACCTACGCATTCACAGCCTCGACACCATCTGTTACAATTTG
ATCTATTGGGGTGAGAACTCGCTCGATTCTTCGCTCTCTATCGAGTCTCG
ATTTATGTCGCGTGAAAAATGCCCAGGGGGAGGAGGTTGATAGTGTGATC
AGGAAAGCCGCTCAGGAGACATGAGTGTCAAAGCTGTTGACATGGGAATG
GCAAAGCACACGTTTTACATCAATCACACATTTCCTGTCTTCATCTCTAT
CATCCCCTCTTCGCACCAGCGAAGCATCTTTCCTGTTTTCGCAGGGTGTC
CTGACCGTTTCGCAACTTCTCAGGATGGATGCAAAGCTTGCTGCCCTTTC
GCTAGACCCGAAGTACATCGCATCGACAGCATCAGTCCATGTACAAGACT
CACTTCTGGAAAGGCCCCTCTGCACTCTGTTTCAAGAAGGACAAGCTCTT
GTCGAAAGGTTAACGCACGAAGGTGGTCCGTCCAATCCGTCACCAAGTCC
ACTCGACGCGTCGGCGCGTGCGGGAAACGACGACATACGACAGGGTCTAA
CCTTGTTCAACGAGATTTCTCGAAGAGTGCACTCGTTGGGTCTTCTGTCT
TCCAACGAGGAGCTGGATGACGTGGCAACGGCTGATCTCAAGTATGTCCT
GGTGGATTTTTACCTTGGTATCTTACACAGTCAAGTGCCCCTGGAAGGTG
AGAAAGGAGACATGGGAAAAAGACAGATAGGAATTGGTAAAGCCTTGACC
TCCTTCGAGACATACATGCAGCGGTGCGAGCAACTCGGGTTGCTGAAAGG
GGAGGACCAACAGGCTTGGGCCGGTGCCCGGGCAGAGGAGGAAGAAGAAG
GGAGCGCGGACGGCCACGACGACGACCAGAGACGACGCGCAGTACTACCC
ACGAAGGGAATCGGGGTCTCTAGTGGAAATATGAACGTCCAACGGACGCA
GAAGATCGAACGCTTTCGGAAGTTGAAGACGGCGAGGGAGCGTCTCCGTG
TCTTGAATCATCTGCTGGTCAAGGTAAAAGACAGCACCAAGGAAGCTGGG
GCTGGGGAGCAAGGCAAGAATCGAGAGGAACCGAGTGGTGAAGAGGAGGA
ACTTGAGAGGGAACGGAGCAAGTTGTGGATCAAGATGGGCGTATGGAAAG
TTCTAGATGAATGGACGATGCTGAAACAAGAGCAAGAGATCCTCGCCATG
ATGAGAACCCAGGGTGGGGAACGTCGCAAGGAAGAAAAGGGGACTCAAGG
GAGTTCAGCTCGCGGTGGTGTGCAAGTCACACACATTGACAAGACGGGAC
CGGGTGGGCAGCTTCGCATCCGTCAAGAAGATTTGCGTGCCCGAGTTTTT
CAGCCTGGCTATACCCTTCCAACCGTGTCTTTGGAAGAATTCGCCGCGCA
AGAGCTGGCAGCCGCGCAGGAACGAAAGGCAAAGGAGGAAAGAAGGGCAG
GGAATCTAAGCGAACCCCGGAGATACGCGCAGTTGGAAGAGGAAGGGAAG
GAAGATGACGCGAGGCTCGTAGAAGAAGCTGCTTATCAGGATCGAACCTG
GGATGATTGGAAAGATGCACATCCTCGAGGCAGTGGTAACAAATTGGGGA
AAAGGTTTTGAAGCTATGGCAAAAGAGTAAGATTGAGCATGTACGTTGAG
TGCTAGCTTACCAAAACATGTGTGAATCAAGCTGAAGCATTAGGGAAGGA
GGAGCATGCAAGGCACTGTCGCGGCCCCGAACGATCTTGACGTTTCCCTT
TGAGTAAAAAGCTAAAGTATGTAAAAACGACGAAAAGAGGGAGGAAAGAA
AGAAAGGAATAGAGCAATGCACGCCCGTCGAGCGACATCATGTTAACTTT
AGTATAAAATCCACGCCATGAAGAAAGATAGCACGATGGAAAATCAAGGC
TAGGGGAAAACAAAAGTGGCTTGGGAGTCAACTCAAGCAGAAAGCGTACC
ACCAATTGTATAGTAGGAATTTCAACCCCTGCCTTCCCATATCAAGTCAT
ACACACT

Coding sequence (CDS) from alignment at CM002458.1:135528..138134-

>rna1792 ID=rna1792|Name=rna1792|organism=Nannochloropsis gaditana|type=CDS|length=1287bp|location=Sequence derived from alignment at CM002458.1:135528..138134- (Nannochloropsis gaditana)
ATGGATGCAAAGCTTGCTGCCCTTTCGCTAGACCCGAAGTACATCGCATC
GACAGCATCAGTCCATGTACAAGACTCACTTCTGGAAAGGCCCCTCTGCA
CTCTGTTTCAAGAAGGACAAGCTCTTGTCGAAAGGTTAACGCACGAAGGT
GGTCCGTCCAATCCGTCACCAAGTCCACTCGACGCGTCGGCGCGTGCGGG
AAACGACGACATACGACAGGGTCTAACCTTGTTCAACGAGATTTCTCGAA
GAGTGCACTCGTTGGGTCTTCTGTCTTCCAACGAGGAGCTGGATGACGTG
GCAACGGCTGATCTCAAGTATGTCCTGGTGGATTTTTACCTTGGTATCTT
ACACAGTCAAGTGCCCCTGGAAGGTGAGAAAGGAGACATGGGAAAAAGAC
AGATAGGAATTGGTAAAGCCTTGACCTCCTTCGAGACATACATGCAGCGG
TGCGAGCAACTCGGGTTGCTGAAAGGGGAGGACCAACAGGCTTGGGCCGG
TGCCCGGGCAGAGGAGGAAGAAGAAGGGAGCGCGGACGGCCACGACGACG
ACCAGAGACGACGCGCAGTACTACCCACGAAGGGAATCGGGGTCTCTAGT
GGAAATATGAACGTCCAACGGACGCAGAAGATCGAACGCTTTCGGAAGTT
GAAGACGGCGAGGGAGCGTCTCCGTGTCTTGAATCATCTGCTGGTCAAGG
TAAAAGACAGCACCAAGGAAGCTGGGGCTGGGGAGCAAGGCAAGAATCGA
GAGGAACCGAGTGGTGAAGAGGAGGAACTTGAGAGGGAACGGAGCAAGTT
GTGGATCAAGATGGGCGTATGGAAAGTTCTAGATGAATGGACGATGCTGA
AACAAGAGCAAGAGATCCTCGCCATGATGAGAACCCAGGGTGGGGAACGT
CGCAAGGAAGAAAAGGGGACTCAAGGGAGTTCAGCTCGCGGTGGTGTGCA
AGTCACACACATTGACAAGACGGGACCGGGTGGGCAGCTTCGCATCCGTC
AAGAAGATTTGCGTGCCCGAGTTTTTCAGCCTGGCTATACCCTTCCAACC
GTGTCTTTGGAAGAATTCGCCGCGCAAGAGCTGGCAGCCGCGCAGGAACG
AAAGGCAAAGGAGGAAAGAAGGGCAGGGAATCTAAGCGAACCCCGGAGAT
ACGCGCAGTTGGAAGAGGAAGGGAAGGAAGATGACGCGAGGCTCGTAGAA
GAAGCTGCTTATCAGGATCGAACCTGGGATGATTGGAAAGATGCACATCC
TCGAGGCAGTGGTAACAAATTGGGGAAAAGGTTTTGA

Synonyms

Publications