rna1766, rna1766 (mRNA) Nannochloropsis gaditana

Overview
Namerna1766
Unique Namerna1766
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1001
Alignment locationCM002458.1:74481..75154 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102678g1.9596.mrna
Orig protein idgnl|cribi|Naga_102678g1.9596
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:74481..75154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102678g1gene1699Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1766rna1766-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28911.1cds1762Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1766 ID=rna1766|Name=rna1766|organism=Nannochloropsis gaditana|type=mRNA|length=1001bp
ATGACTGCAATTTCCTCACAAATCACCAAGGCATGCACAAAGGACACTTC
GATTCCTTTAGCGGTGCAAGCGGGGCGGGGCATGGCAGCATCCTTACTGG
AAAGTAGGACTTCCGTCCCTGGTCCTCGCCCTCGGTCACGAAATAAGTAC
GTCGTCCTCTTCCTCCTCGCCACCTTGGTCACAAGCCATGCCCTTCCAAC
GCAAACGCTCACGGCAGCATGGGACACTGTTGCTAGCTTTGTGTCTTCCC
CTGCGCTCCCGTCGACTCGACCGACCTCTACTTTGTCTCAGGAGAAACGA
GATCCCTCGACTACCATATCCCGACCCTCCGCTTCAGTTCCCATGCCGGA
TATGGACCCCCCTGTCGATTCCATTGAGGAACAAATCGCCTTACATGGTA
GGCCACTGCCGGCTTCCACCTTCGTCGGATCCTTCGAGGATGGCTTCGAG
GGATGGACGAGCCTGGAAGGAGCGCAAGAAGACTCGATAGTGCTTGTGTC
CTCGCCCGTTCGCACCGGGAACCAGTCCGTGCGGATACGCGTACGTCCTG
GCGACTACATACAGCACGGAAACCGGGCGGAAATCACGCACAACCTCGAA
GACAGTCCAGGGACGGAAGGGTGGTACGCGTGGTCGCTGTACATCCCCCG
AGACTACCCCACGGTGGCGGATCCGACCCGCCAGTGGCAGATCCTGTGCC
AATGGCACGATCAGCCCGACCTGGACGCAGGCCAATCCTGGGACGCCTTC
CCGCCACACAACTCCTCCATCGCCCTCTACCTCCTAAACTACCCGGAGAA
CACCTCCATTGGACTCGGCGTAGGGACCAACCTCCCCAAAGGCACTTGGC
AATACGGGCCAGCCCGCGTCGAGAAGGGCGAATGGATCGACATCCTTTTC
CACATTGGGTGGTCGACCGGGCAAGATGGCTTCGTGAACGCCTCCGTGGA
GACCGGCGGGCTGGAAACCCGGCAGACACAAGTCCTGACCCCCTTGGGAG
G
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protein sequence of rna1766

>rna1766-protein ID=rna1766-protein|Name=rna1766|organism=Nannochloropsis gaditana|type=polypeptide|length=70bp
MRQGKLLRWGSARRLVSLQVWRGRARRTGKEFKMPAKIRRKRRAKSRKMP
AKIRRKRRAKSRKMRSKIPF
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mRNA from alignment at CM002458.1:74481..75154+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1766 ID=rna1766|Name=rna1766|organism=Nannochloropsis gaditana|type=mRNA|length=674bp|location=Sequence derived from alignment at CM002458.1:74481..75154+ (Nannochloropsis gaditana)
aggagaagcttcAGGAGCagccgggggaaggagggaagaaggcagagagg
gaagcgTTGAGCCAGCCGCTGACCCTCGAAACAAAGGATGAGGCAGGGCA
AGTTGCTCCGGTGGGGTTCGGCGCGTCGCCTGGTTTCCCTGCAGGtgtgg
cgggggagagcacggaggacgggaaaggaaTTCAAGATGCCTGCAAAGAT
TCGGAGAAAGCGCCGGGCAAAGAGTCGAAAGATGCCTGCAAAGATTCGGA
GAAAGCGCCGGGCAAAGAGTCGAAAGATGCGGTCAAAGATTCCCTTTTGA
TGCCTCCGCCCGCTGTCAAGCcgcgcggagggagcgggagcggcgGCCTG
GATGCCTCCCTCTTAGGGGCCATTCAGAGTCATTCCaccgccccatcctc
ccacGCGACCACGAATTCCCTGAGCAAAAACCTTCTCACCCAGGCCTTGA
ACCGCTTGTTTGGGGGAAAggtgagagaaggagggcgagagggagggcgg
gcgggagggagggcaagggaacATGGGGGCGGCTCATGAATTTGGAGGGT
TCGACAGGACCCTGTGTGCCAACATAATTTCCCGGCCGTTTTTCTCTCTT
TAGGAAAATAACGAAGGTTCACCTTACGCTGTGGACGTGGAAGATGCCCT
GGCGTGGGTGGGGCGGTTGGGTAA
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Coding sequence (CDS) from alignment at CM002458.1:74481..75154+

>rna1766 ID=rna1766|Name=rna1766|organism=Nannochloropsis gaditana|type=CDS|length=213bp|location=Sequence derived from alignment at CM002458.1:74481..75154+ (Nannochloropsis gaditana)
ATGAGGCAGGGCAAGTTGCTCCGGTGGGGTTCGGCGCGTCGCCTGGTTTC
CCTGCAGGtgtggcgggggagagcacggaggacgggaaaggaaTTCAAGA
TGCCTGCAAAGATTCGGAGAAAGCGCCGGGCAAAGAGTCGAAAGATGCCT
GCAAAGATTCGGAGAAAGCGCCGGGCAAAGAGTCGAAAGATGCGGTCAAA
GATTCCCTTTTGA
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Synonyms
Publications