rna1763, rna1763 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1763
Unique Name	rna1763
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	347
Alignment location	CM002458.1:62996..63846 -

Link to JBrowse

Properties


Property Name	Value
Product	zinc finger ccch domain-containing protein 17
Orig transcript id	gnl\|cribi\|Naga_101494g2.1275.mrna
Orig protein id	gnl\|cribi\|Naga_101494g2.1275
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:62996..63846 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101494g2	gene1696	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1763	rna1763-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28914.1	cds1759	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:62996..63846-
coding sequence from alignment at CM002458.1:62996..63846-

mRNA sequence

>rna1763 ID=rna1763|Name=rna1763|organism=Nannochloropsis gaditana|type=mRNA|length=347bp
GGAGGAGGCCTGCTGAGGGAGGGATCAGGAGGAGGACGAGAGGGGTGGAC
CCAGCCTCTCCTAGTCCTCCTCGCGGCTCTCACCTGGTGGTTAGAATGTC
AGATGCCTTTCATGGGCATATTGAGATTTTGGGTACACAATCCCCTCCTT
CCCTGCTCCCCTCCTTCCCACCCGCCTGCCCTGCTTCCCTCTTTTCAGGC
AACCGTCCTCGCACACGGCACGAAGCAGGACGCAAGCAATCCGGCCCATG
CCGGGGGAGGGATAGCAGCAAATACACGGTCGACAGAGCCTTCTCTGGCA
GCGGCAGCCGTGGAGGGAAACGGCGCTTTTGACGGGTAAGAGTTCCC

protein sequence of rna1763

>rna1763-protein ID=rna1763-protein|Name=rna1763|organism=Nannochloropsis gaditana|type=polypeptide|length=130bp
MSYKCGPGGGGGSYRGTDPGGGGGRGGGGGQAWATSIDINGLTDCFYYLS
DKCTKGPDCAFRHNEHAKRNRKTCTTWAQGGKCSPRAKHAYKACNKGPEP
STCLASDSSLRMLLSLHFCVRIVCLLYFGG

mRNA from alignment at CM002458.1:62996..63846-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1763 ID=rna1763|Name=rna1763|organism=Nannochloropsis gaditana|type=mRNA|length=851bp|location=Sequence derived from alignment at CM002458.1:62996..63846- (Nannochloropsis gaditana)
CGCCTCCCCCTTTTCTCAATCAATGACGCCCACCAATGCTCATCAATCTG
GCACATAACTGCAGAGACTTGAATTGTCTGTCATGTCGTACAAGTGTGGT
CCGGGTGGGGGAGGAGGAAGCTACAGAGGGACAGATCCGGGTGGAGGAGG
TGGAAGGGGAGGAGGAGGAGGACAAGCATGGGCGACATCTATAGACATAA
ATGGGTTGACAGATTGTTTCTACTACCTAAGCGATAAATGCACCAAGGTA
AGGGCCGGACGATCGATCGATTGAAAATTCATGCCGGGCTTGCACAGTTT
GTCGGATGCTTTTCCCACCCCCCCGGCACTCGCCTTGAAGGACGGAGAGC
CGCTTCATTTGTCACCTCGCTCCTTCCTATTCCATCCCGTGTGCCAGGGC
CCTGACTGCGCCTTTCGGCACAATGAACATGCCAAACGCAATCGTAAAAC
CTGCACTACTTGGGCCCAAGGCGGTAAGTGTTCGCCACGGGCAAAACATG
CCTACAAAGCGTGCAACAAGGGCCCGGAACCAAGCACCTGCCTGGCGTCC
GACTCCTCACTCCGTATGCTTTTATCCTTGCATTTTTGTGTGAGGATTGT
GTGTTTGCTCTATTTCGGGGGATAGGGAGCTTTGAGAACATTCAAAGTGC
CTTTTGCCTGTCCCCGTTCCATTCTTTTCCCTCCTTCATCCTCCCTTCAA
GACTCATCGCTTATCTTCCTATGCTCGGAGTAGGCAACTGCAAAATTGAA
TGCTATTTCCGGCACCCGAGCTCGTCCGCACCCGTCGGAATCGAGGATGG
AGGAGGGAAGGGGGCAGCGGAGAAGGGCTTTTGCAAGTATGTGGAGAGGG
A

Coding sequence (CDS) from alignment at CM002458.1:62996..63846-

>rna1763 ID=rna1763|Name=rna1763|organism=Nannochloropsis gaditana|type=CDS|length=786bp|location=Sequence derived from alignment at CM002458.1:62996..63846- (Nannochloropsis gaditana)
GGCCCTGACTGCGCCTTTCGGCACAATGAACATGCCAAACGCAATCGTAA
AACCTGCACTACTTGGGCCCAAGGCGGTAAGTGTTCGCCACGGGCAAAAC
ATGCCTACAAAGCGTGCAACAAGGGCCCGGAACCAAGCACCTGCCTGGCG
TCCGACTCCTCACTCCGTATGCTTTTATCCTTGCATTTTTGTGTGAGGAT
TGTGTGTTTGCTCTATTTCGGGGGATAGATGTCGTACAAGTGTGGTCCGG
GTGGGGGAGGAGGAAGCTACAGAGGGACAGATCCGGGTGGAGGAGGTGGA
AGGGGAGGAGGAGGAGGACAAGCATGGGCGACATCTATAGACATAAATGG
GTTGACAGATTGTTTCTACTACCTAAGCGATAAATGCACCAAGGGCCCTG
ACTGCGCCTTTCGGCACAATGAACATGCCAAACGCAATCGTAAAACCTGC
ACTACTTGGGCCCAAGGCGGTAAGTGTTCGCCACGGGCAAAACATGCCTA
CAAAGCGTGCAACAAGGGCCCGGAACCAAGCACCTGCCTGGCGTCCGACT
CCTCACTCCGTATGCTTTTATCCTTGCATTTTTGTGTGAGGATTGTGTGT
TTGCTCTATTTCGGGGGATAGATGTCGTACAAGTGTGGTCCGGGTGGGGG
AGGAGGAAGCTACAGAGGGACAGATCCGGGTGGAGGAGGTGGAAGGGGAG
GAGGAGGAGGACAAGCATGGGCGACATCTATAGACATAAATGGGTTGACA
GATTGTTTCTACTACCTAAGCGATAAATGCACCAAG

Synonyms

Publications