rna1751, rna1751 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1751
Unique Name	rna1751
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2307
Alignment location	CM002458.1:31925..34074 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100142g5.2513.mrna
Orig protein id	gnl\|cribi\|Naga_100142g5.2513
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:31925..34074 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100142g5	gene1684	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1751	rna1751-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28932.1	cds1747	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:31925..34074+
coding sequence from alignment at CM002458.1:31925..34074+

mRNA sequence

>rna1751 ID=rna1751|Name=rna1751|organism=Nannochloropsis gaditana|type=mRNA|length=2307bp
ATGGGAAGACACCACATAGGCATCTGTGAAAGCGAAAATGTATGGGAGGA
CGAAGATGAAATATGGGATCCTGCTGGCCGATGTCGAATATTGCAGATGC
CAACTTCGTTGTTCATGGCTCTACCATTCCTTGTACAGGGAGATTTAACC
TAGAGAGTCTGCAACAAGGAGTTGCGAGCTCTAGCCCTCTCCCTCACTCC
CTGAAAAAAATCCCAAAAGTGACAATTTGCCCGAAAAGAGCTTGACGATA
GGAAGATAAAACTGACAGCAGCATTATAACACGGCAGTACGCACTCGATA
GGATATCTTGCGAGGAGTACGACCGGGTGCAGGGATGCCATCAACGCGGG
CATCAGCGCTGTCCACAAGCGCGAGCAGTGAAAGCACTGTACCATCTGTC
ATCGAGGAGGAAAATGGCTCCAAACCTCTCGTTTCTGCGCAAGCTAAGGT
CACAACCCAGAGACGAGCTTCCAAGAGACGGGCCTTGGAGACAAAGAAAT
CCCAGGATGATGGAGAGCAGGACCTACTGGATGTAGTACCGCTACCTGCA
GTGCCCTCCCTCTTTCCCGTTCTGGACGCTCACGGAAACGATGACGAGGA
GGAAGATGAAGAGAGCACAGACGAAGAGGAGGAAGAGGAGGAGGAGGAAA
GCGACGATGACATCACACTTGTCATGACGGGCCCCCCACGGTACAGAGCA
TTTGCCAACAAGTACATAAGACCAGGTTTGGAAGGGGCCACAGGCGTGGC
AGATGCAGAGGGAGGAGGGGCGGGGGGTCACGACAAGGCCCCCGGGGAGG
CCAAAGAGGGGGATGAGGACAAGGAGGAGGAAGCGGCCGAGGCCCGGCGG
CGGGCTTTGGCCTGGGAGGGCTTCGGGGCAGACGAGGAGGAAGGGAAGGA
GGGGGGGGTGGGGGACGAGGAGGAAGCGGACATGTTCACGAACCCCTTGA
AGCATCCAGCCATCCGCACCTACACCCAGGACTTCAAGGACGAGGATTTC
CCGCCCACGGACCAGCTGCGCCTCCGCTTCAAGCGCACAGCCTTTGACAT
CGACATCACCACCGTTGAGGAGAAAGGTTGGAACCGGACGGGGGCCTCGG
CGGCTGACTACTTCAATTACGGCTTCGTTGAGGAGAGCTGGGCGTTGTAC
TCGGAGAAACAGATCCGTCTCCGCTGGCTCGCCCAAAAGAAGGAAGCTCA
GACAGCGCAAGAGGAAGAGAAACTGCTTGCCTCCCTCCTTGAGGCGCAGG
CAGCGGAGGGACGGAAGTACGAGGAGGAAGAGGAAGCCGAGTGGGGGGGG
AAGGAGGAGCCCCTGCCGGATGGACAGGTGGAGGCTGCAGGGGACTACCC
CCCGCCTCCACCGTTTCCTCCCCCTCCCCGCGGCACGCCACCAGGGATGA
TGGAGCAAGAGATGGGGGAGGGCATGCCTCCTTATCCCGACGAACCGCCA
GGATACCCTCCGGCGTGGCAAAGGGATGGTCCCAACAGCCCCCCCCCTCC
ATGCTCCCTTCCCTCCATGGCAGCAGCCGCGCCATGACGGTCCACCGCTT
CCCTTCCATGGAGGAGGGAGGGGAGGACGAGGCTACGGACGGGGCGGGAG
GGGAGGGAGGGGTGGAGGACGTTTTTCCGAAGATGACTGGCAGGGGCGGG
GACGCGGTGGGCGAGGGCCAGGGCGGGGCTTGCCTCCGCCGCACGCCTTT
GGAGGCCCGCCGTTCCCTCCCCGAGGCTTTCCACCGGCGCAGCATTTCCA
TGAGGGAGGGAGAGAAGGAGGTTTGGATGGCTTCTTCCCGCCTCCGCGAG
GCCCCCCATTCCGAGGGGAGGACAGACGGGGAGGGGAGAGAGGAGAGGGG
AGGGAGTCTTTCATGCGCGGACCGGGTGGCGGATCGGAGGAAGGGGAGCA
GGAGAGGATGAATCGGAGAGATAGGGATGGTAGGAACTATGGCAGCAGAG
AGATAGGATTTGAGAGAGACAGACGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGGGG
GGATGGAGGATGACCGGTCGATCTCTTCGCGCAGTAGTGGGGGAAATAGG
GAGAAAGAAAGGGGAGATAGAGAAAGGAAACGTGGTAGGAGTCGAAGCCG
TAGCCAGGACAGCCACGTGTCGGGTGCAGGTCGTGGGCGGGAGAGAAGAG
GGGAGAGGGAGAGTGGGAGGGGGCGAGATGCTCGATGGGGGCGTGAGGAC
GACTGGAAACGAATGCGTCGATGACATCCGAAGTTGAACTTACAAATTTT
TGCCTAA

protein sequence of rna1751

>rna1751-protein ID=rna1751-protein|Name=rna1751|organism=Nannochloropsis gaditana|type=polypeptide|length=465bp
MMADNDQDRRSMVAGFDFPVAGDKRKGPSRRTTPKSCYENKEQAILCASQ
GMCEQGNHPAMPLKLGCLVQPQRHQQPGSPISAHAVNSTRNNGIHRPYHP
THRRGGGGLVLPEYYEGGRRMEVEGVGSCPGSPALPSSSLGDLASEAPVS
TVAAVGSLPSCQSRYQRPQPRIGQGRYQPQASALARTASGEWRSTYPERG
DAEPLISPLTSPTASEGSSDSVDDGGDIVGRESVAWELRGKGPRLPDMQR
VLSVDSQKVLSDQERRRSRQQRKRTRVGGWKPLGELATEDMDMDGAHVQP
QGKEGPHLSSHLFGQALTTKEIITRRQEHQHAEELKRQKRLREHEHEQLA
IRTASLFLSAKPATSSISCCIPDMDRKEQERPQLQEQIQCARSSRSGVET
WQGNEERVGEGISQGTLPSSHSGIEAFNLSNTKDKIFPAAGGKELHGGEL
MFRASAHKGLGAIGN

mRNA from alignment at CM002458.1:31925..34074+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1751 ID=rna1751|Name=rna1751|organism=Nannochloropsis gaditana|type=mRNA|length=2150bp|location=Sequence derived from alignment at CM002458.1:31925..34074+ (Nannochloropsis gaditana)
GGATCACTTGCTCTTTGATGTCAATTTATGATACATGTATGATTCATGTA
TGGTAACGACAGTAGCGAGCTTCTCTTTCACGATGTAGATAAATACCATT
CAGTCCTTCCGACCCGTGTGGCGATGCTTGAACAAAGAAGAGCGGCACAT
ATGCGTAGTGACCGATCTCCAAACTAGCGGTGCCCAAAGTATACTGCCTA
ACTCATTATACTTATGAGTAACGAGAAGGAACTTCATTGAACTTCTTTGT
TGTACCCTCTGAGCCGTAGTACTCTTTTTGACCAAGCAAAAGCTTGAACA
CTCCCTCCATATTCGCCCGTGCTAACGCTTGATTCATAGGTGTCCAACTT
TCATATGTACACGTACACAAGGTCGAATATTAAAGTCTTCATAGGTTGTG
ATTATATGCGCAAATAGCTTGTGCGTCTCGGAGGGACAGACAATGATGGC
AGACAATGATCAAGATCGACGCTCCATGGTAGCAGGTTTCGATTTTCCTG
TCGCAGGAGACAAGAGAAAAGGACCAAGCCGACGGACTACCCCTAAAAGC
TGTTATGAGAACAAAGAGCAGGCCATACTTTGTGCGTCCCAGGGAATGTG
TGAACAGGGAAATCATCCCGCAATGCCCCTTAAGCTCGGTTGCTTAGTTC
AACCTCAGCGACATCAGCAGCCAGGAAGTCCCATTTCCGCACACGCAGTC
AATAGTACACGGAATAATGGCATACACAGGCCATACCACCCGACGCATcg
ccgaggaggcggtggattGGTGTTGCCGGAGTATTACGAGGGTGGCAGAA
GGATGGAGGTAGAAGGCGTTGGCTCCTGCCCTGGgagccccgccctccca
tctTCGTCGCTAGGAGATCTAGCAAGCGAAGCACCAGTCTCTACCGTCGC
AGCAGTAGGTTCACTTCCTTCGTGCCAGTCCAGATATCAACGTCCACAAC
CGCGCATTGGCCAAGGACGTTATCAGCCTCAAGCTTCGGCCCTTGCCCGC
ACAGCTTCTGGAGAATGGCGCTCAACCTACccggaaagaggagacgcgGA
ACCGCTCATCTCGCCTTTGACCTCCCCGACAGCATCGGAGGGTTCAAGTG
ACTCAGTTGACGACGGGGGGGATATCGTAGGGCGGGAGTCGGTTGCGTGG
GAGctgagagggaaaggcccccgcctgccgGACATGCAGCGCGTGCTCTC
GGTCGACTCACAAAAAGTGCTCAGCGACCAGGAGCGACGTCGCTCACGAC
AACAACGCAAACGCACGCGTGTCGGTGGGTGGAAACCGCTTGGGGAGCTA
GCGACGGAGGACATGGACATGGACGGTGCACACGTCCAAccgcagggaaa
ggaagggcccCATCTCTCCAGCCATTTGTTTGGGCAGGCATTGACGACGA
AGGAAATCATTACTCGACGGCAAGAACACCAGCACGCGGAAGAGCTGAAG
CGGCAGAAGCGGCTGAGGGAGCACGAACATGAGCAGCTGGCTATCAGGAC
GGCGAGCCTCTTCTTGTCCGCCAAACCCGCGACATCTTCAATCTCATGCT
GCATTCCCGATATGGATCGTAAGGAACAGGAACGACCGCAATTGCAAGAA
CAGATTCAATGTGCGAGATCGTCTAGAAGCGGGGTCGAGACTTGGCAAGG
GAACGAGGAAcgggtcggggagggaatcTCCCAGGGCACCCTTCCTTCTA
GCCACAGTGGTATCGAGGCATTCAATTTGAGCAATACCAAGGATAAGATA
TTTCCAGCAGCAGGGTGAGGAATGGTCTTGATAGGAGTCAAAAGGCGTAT
AGAATGATAGAAAAATATGCAATGGCTTTTGAAATGGTCTTTGTAAAGTG
CAATGTAGACTTCTTTCCAACTCCAATTGAATaaaggcgtggaggagaaa
gactcGAATTAAATATGGTAACTATgtggagaagagagaaagacaGAGAG
TTATGCAGACACGTAACTTTCTTGAACGGCACGAATTAGAGGGTGcgctg
gacgaggagacaagcacgggagaagaaaggtaAGGAAATGGGCATATGAG
CGTCTCAATCGAATGCCCCAATAGAGGGAAAGAGCTTCATGGTGGTGAAT
TAATGTTCCGTGCTAGTGCACACAAGGGTTTAGGTGCAATTGGAAATTAG

Coding sequence (CDS) from alignment at CM002458.1:31925..34074+

>rna1751 ID=rna1751|Name=rna1751|organism=Nannochloropsis gaditana|type=CDS|length=2796bp|location=Sequence derived from alignment at CM002458.1:31925..34074+ (Nannochloropsis gaditana)
ATGATGGCAGACAATGATCAAGATCGACGCTCCATGGTAGCAGGTTTCGA
TTTTCCTGTCGCAGGAGACAAGAGAAAAGGACCAAGCCGACGGACTACCC
CTAAAAGCTGTTATGAGAACAAAGAGCAGGCCATACTTTGTGCGTCCCAG
GGAATGTGTGAACAGGGAAATCATCCCGCAATGCCCCTTAAGCTCGGTTG
CTTAGTTCAACCTCAGCGACATCAGCAGCCAGGAAGTCCCATTTCCGCAC
ACGCAGTCAATAGTACACGGAATAATGGCATACACAGGCCATACCACCCG
ACGCATcgccgaggaggcggtggattGGTGTTGCCGGAGTATTACGAGGG
TGGCAGAAGGATGGAGGTAGAAGGCGTTGGCTCCTGCCCTGGgagccccg
ccctcccatctTCGTCGCTAGGAGATCTAGCAAGCGAAGCACCAGTCTCT
ACCGTCGCAGCAGTAGGTTCACTTCCTTCGTGCCAGTCCAGATATCAACG
TCCACAACCGCGCATTGGCCAAGGACGTTATCAGCCTCAAGCTTCGGCCC
TTGCCCGCACAGCTTCTGGAGAATGGCGCTCAACCTACccggaaagagga
gacgcgGAACCGCTCATCTCGCCTTTGACCTCCCCGACAGCATCGGAGGG
TTCAAGTGACTCAGTTGACGACGGGGGGGATATCGTAGGGCGGGAGTCGG
TTGCGTGGGAGctgagagggaaaggcccccgcctgccgGACATGCAGCGC
GTGCTCTCGGTCGACTCACAAAAAGTGCTCAGCGACCAGGAGCGACGTCG
CTCACGACAACAACGCAAACGCACGCGTGTCGGTGGGTGGAAACCGCTTG
GGGAGCTAGCGACGGAGGACATGGACATGGACGGTGCACACGTCCAAccg
cagggaaaggaagggcccCATCTCTCCAGCCATTTGTTTGGGCAGGCATT
GACGACGAAGGAAATCATTACTCGACGGCAAGAACACCAGCACGCGGAAG
AGCTGAAGCGGCAGAAGCGGCTGAGGGAGCACGAACATGAGCAGCTGGCT
ATCAGGACGGCGAGCCTCTTCTTGTCCGCCAAACCCGCGACATCTTCAAT
CTCATGCTGCATTCCCGATATGGATCGTAAGGAACAGGAACGACCGCAAT
TGCAAGAACAGATTCAATGTGCGAGATCGTCTAGAAGCGGGGTCGAGACT
TGGCAAGGGAACGAGGAAcgggtcggggagggaatcTCCCAGGGCACCCT
TCCTTCTAGCCACAGTGGTATCGAGGCATTCAATTTGAGCAATACCAAGG
ATAAGATATTTCCAGCAGCAGGAGGGAAAGAGCTTCATGGTGGTGAATTA
ATGTTCCGTGCTAGTGCACACAAGGGTTTAGGTGCAATTGGAAATTAGAT
GATGGCAGACAATGATCAAGATCGACGCTCCATGGTAGCAGGTTTCGATT
TTCCTGTCGCAGGAGACAAGAGAAAAGGACCAAGCCGACGGACTACCCCT
AAAAGCTGTTATGAGAACAAAGAGCAGGCCATACTTTGTGCGTCCCAGGG
AATGTGTGAACAGGGAAATCATCCCGCAATGCCCCTTAAGCTCGGTTGCT
TAGTTCAACCTCAGCGACATCAGCAGCCAGGAAGTCCCATTTCCGCACAC
GCAGTCAATAGTACACGGAATAATGGCATACACAGGCCATACCACCCGAC
GCATcgccgaggaggcggtggattGGTGTTGCCGGAGTATTACGAGGGTG
GCAGAAGGATGGAGGTAGAAGGCGTTGGCTCCTGCCCTGGgagccccgcc
ctcccatctTCGTCGCTAGGAGATCTAGCAAGCGAAGCACCAGTCTCTAC
CGTCGCAGCAGTAGGTTCACTTCCTTCGTGCCAGTCCAGATATCAACGTC
CACAACCGCGCATTGGCCAAGGACGTTATCAGCCTCAAGCTTCGGCCCTT
GCCCGCACAGCTTCTGGAGAATGGCGCTCAACCTACccggaaagaggaga
cgcgGAACCGCTCATCTCGCCTTTGACCTCCCCGACAGCATCGGAGGGTT
CAAGTGACTCAGTTGACGACGGGGGGGATATCGTAGGGCGGGAGTCGGTT
GCGTGGGAGctgagagggaaaggcccccgcctgccgGACATGCAGCGCGT
GCTCTCGGTCGACTCACAAAAAGTGCTCAGCGACCAGGAGCGACGTCGCT
CACGACAACAACGCAAACGCACGCGTGTCGGTGGGTGGAAACCGCTTGGG
GAGCTAGCGACGGAGGACATGGACATGGACGGTGCACACGTCCAAccgca
gggaaaggaagggcccCATCTCTCCAGCCATTTGTTTGGGCAGGCATTGA
CGACGAAGGAAATCATTACTCGACGGCAAGAACACCAGCACGCGGAAGAG
CTGAAGCGGCAGAAGCGGCTGAGGGAGCACGAACATGAGCAGCTGGCTAT
CAGGACGGCGAGCCTCTTCTTGTCCGCCAAACCCGCGACATCTTCAATCT
CATGCTGCATTCCCGATATGGATCGTAAGGAACAGGAACGACCGCAATTG
CAAGAACAGATTCAATGTGCGAGATCGTCTAGAAGCGGGGTCGAGACTTG
GCAAGGGAACGAGGAAcgggtcggggagggaatcTCCCAGGGCACCCTTC
CTTCTAGCCACAGTGGTATCGAGGCATTCAATTTGAGCAATACCAAGGAT
AAGATATTTCCAGCAGCAGGAGGGAAAGAGCTTCATGGTGGTGAATTAAT
GTTCCGTGCTAGTGCACACAAGGGTTTAGGTGCAATTGGAAATTAG

Synonyms

Publications