rna1749, rna1749 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1749
Unique Name	rna1749
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2031
Alignment location	CM002458.1:25123..27229 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100142g7.2507.mrna
Orig protein id	gnl\|cribi\|Naga_100142g7.2507
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:25123..27229 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100142g7	gene1682	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28926.1	cds1745	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1749	rna1749-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:25123..27229-
coding sequence from alignment at CM002458.1:25123..27229-

mRNA sequence

>rna1749 ID=rna1749|Name=rna1749|organism=Nannochloropsis gaditana|type=mRNA|length=2031bp
CAAAGCAATTGATGTACCGCATACACACAGATGTCCACTTAAATTCAGTT
CCTCAGCTTTGAAGTCTGCATCGAAGCTAAAGGAGAACCTTGATCTTCGA
GCTTGTGGCGGTTAGGCAGGCGTCAACTTCACTATCAAGGAAGGAGAACG
GTCAACTCCTACATAAATGCTACGGCTAAAAGCACCATTACGCTATGCGG
CCCGTCAGGCTCCGTTATCTCTCCTTGTTTTCTTTGTACATTCCACCTTG
ATATCTTGCGCCCGATCAAATGCAGTGAGGACCGGCAGCAACATCAGATT
TGAGATACACGACTCTTCAAGTCTACTTCGTCCTCAATATGGTAGACTCC
TTCATCACGGGTTCCCCCTCTCGTTCATATCTCCTCCTCAAGCGCCTGCA
CCAACGCACTCTCCTTCGTCAGGAGAAAATGGCAACGGCCCTTTCGCGAG
GAGGAGAAGAAGAAAAGCAAAAAGTGATCTCGAAAGCGTCGGCCGTAATC
AGAACGTGAAAACAAAACGGAGCAGTAAGGTACAGCCTTTCTCGCCTATC
AATGAGTTGGCCATTTCCACTGCTACCACTTCATCCTCCTCGTCTAAACA
TTTTTTCTTCGATTTTTCAGTGCCGAAAGGTCATAATGGCATGGCTTTCC
CCGCGCATCCAGCAAAGATGACGGAACAAGGCCCTGCCGCTCCTGCCCGC
TCTCCTAACACCCTTTTGGAACCTCCCTCCAGCCATGCCAAAACTCTGGC
GGGCGGCTGGCATCAGATCTGGACGAGTCTGGCGGGTGGGGAAATGCCAC
CGCCAGAAGGAGGAGAAGGGGGGGGGGGAACAACCTGGTCTTCAAGGTGC
TGCTGGCGGCCGTCGCCCTTATCTATGGTACCAATTTTGGCGCCATCAAA
TACTTGGATGCAGCTCACGTGGACGTGTCCATCGTCACCGCCATCCGGTT
TGCGCTGGCTACCCTGTCGCTTTGTCCTTTCTTGTACAAGGCCCCTATGC
CCGTGGTCATGAGGGGACTGGAAGTGGGAATGTGGGTGGCTGCCGGTTAC
ATCGCGCAAGCCATCGGGCTTCAAACCACGCAGTCCTCCAAATCTGCCTT
CATCTGCTCCCTGGCTGTGGTGGTGGTCCCCATCGTCAACGCCATCGTCT
ACAAGAGGAAAGCCCCGCCCACGGCGTGGCTGGCCGCTGTCCTTGCGGTC
TTGGGGGTCGGACTCATGACCCTGGAGGGGAAAGGGACGCCACCCTCCAT
CGGAGACCTGTGGTCGATGGGCCAGCCACTTGGCTTCGGCATCGCCTTTG
TCCGGAGCGAGCAGTGCATGCAAGAGAACAAGAGTCAGGCCTTGGCGATG
ACGGCGGCCCAGATGGTCGCCGTCATGGCCGTCTCCATGCTCTGGGTCTC
CTTCACCCTCACAGCCAACACACCCAGCATCTCCGCGCTCTATGAGCCGG
TGAACATGGCTGCCCTCTTCTACACCGGCGTGGTCACCAGTGCTCTGGCG
GTGGTGGGGGAGAGCATTGCCCTGGCCCATATCTCCGCGGAGGAGACGAC
GGTGATCCTCTCTACGGAACCCCTGTGGGCGGCTCTCTTCGGCGCCATGC
TGCTCGGGGAGAAGATGAATGGGTTTGGGTACCTGGGTGGCGCGACCATC
CTGCTGGGTTGCCTCCTGACGCAGTTGAAACTCCCCAAGGGGCTGGAGAA
ACTGCTTGGACCGTTGGAGGAGGGAGGGGAGGCGTGAGGGGGTTGGGACC
AGACAGGTACTATGCAAAGTCGGATAAGGTCGCATAGCAGTAGCTGAAGG
GGGATGAATAAGGGCGTGCTGGATGCGAGCTCTCTCTGGCTCTAAGGTAA
GGTGCTAAGGAGCAAGCCAGTCATGGTGAATCGTCGACCGTTTCTCCAGA
AAAAGTCATTGAATCGACGCATACTTTTGGCTGTATGCATAGAAATATGA
AACATCTGTCCAAACTTGACGGTATAATACGGGCATAATGTGAGATTAAA
GAAAAGAACAAATATTTATGGCATCGATCAA

protein sequence of rna1749

>rna1749-protein ID=rna1749-protein|Name=rna1749|organism=Nannochloropsis gaditana|type=polypeptide|length=454bp
MSQRSPPSPRRTKTCELRMARAKPTNNPASEATDTPGTLYRSVISTCSVL
ENAESHAASKSNRISVWHAPTSRCSSVSTSASPRSMSSIINATDPLADAL
SACHSPVSLQAQEQSSLFAGSGFKGKNYGAGDLCEDRNAREDERFLQSQL
YLSGASPRTSCPSFSSPTSFDVTSGSATPRPARSRDRLDAAIYESRSMAA
LLTDGASTGRRMSDMDVESVEEGLNELRTSKRAGIKGDRTATTVLDCRAQ
VRIIGNGLRREVDQKGAGTTKLDNKAHGDRRRTGGENRRRKCSTTRSDTA
NVAAVQARHLQADVMATRILCEKAKLTTAKLDSKSANIQAQLEILKRQRS
YLHKALHALLFADESEETERRNGRSLVKEVQAVRNMKIEDFETIRAKERV
EEERARRRKNECMQRSMLVSLVKSTCTTASRPSSPPSSTSFPVSLPPFSN
AIAS

mRNA from alignment at CM002458.1:25123..27229-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1749 ID=rna1749|Name=rna1749|organism=Nannochloropsis gaditana|type=mRNA|length=2107bp|location=Sequence derived from alignment at CM002458.1:25123..27229- (Nannochloropsis gaditana)
GCCCGGAAGACGTTTACTACTGGAGTCAACGGAAGAAGACCCGCAACAGA
GATACCTTTCCATGCACTTTGATAGCGCATTTAGAGTAGGAAAAACAAGA
AAATTGTAGTAAAGGAAGATATAGTGCTATTTTTAGCCTGTTGGAATGTT
GCCCACAGGCGACTGCACTAAACATACAAATTTATGCTCAAGAACAGGCC
CATTTCCCTATGGAACAAATTACAGCTATAACGAAGCTACAGTCACCAGC
TTGCTGAGCACATAGATTGATATCCAGGTGTATAGTTGTTATCTTGGGAG
AAGGAAGCAAACGAAACTTACAGTGTCCCTCTGAAAAAGGTCGCTGAAGA
TTAAAGAAAGTAGGAATTGCGGGCTGCAGGGCCCTTCCTCATTACTGCTC
ACGGTCCAGGTAAACAGGAAATCCATATTCGACAGATTTTCAAGAGCTTT
CTGTTTCTAACGACGTCGTCTCGGCCAGAGTCTTCGCAAAAGCCATGTCG
CAAAGATCACCACCGTCTCCACGGAGGACAAAAACTTGTGAACTTCGCAT
GGCGCGGGCTAAACCCACGAATAATCCTGCCTCGGAGGCAACAGATACTC
CTGGCACCCTATATCGGTCAGTAATTTCTACATGCTCTGTGTTGGAAAAT
GCTGAAAGCCACGCAGCCTCCAAAAGCAATCGAATTTCGGTATGGCATGC
CCCTACATCGAGATGCTCTTCGGTGTCAACTTCGGCGTCCCCCAGATCTA
TGTCGTCTATTATCAATGCTACGGACCCGCTTGCAGATGCCCTATCCGCT
TGTCACTCTCCTGTGTCTTTGCAGGCTCAGGAGCAATCCTCTTTGTTTGC
AGGCAGCGGCTTCAAGGGAAAGAACTATGGAGCAGGGGACCTTTGTGAGG
ACAGAAATGCGCGAGAAGACGAAAGGTTCCTCCAGTCTCAGCTTTATCTT
TCAGGGGCCTCACCAAGGACATCCTGCCCTTCGTTCAGCTCTCCTACTTC
TTTTGACGTCACGAGCGGGTCTGCCACCCCGAGGCCAGCCCGAAGCAGGG
ATCGTCTCGACGCTGCCATCTACGAGTCGAGGTCGATGGCAGCTTTGCTA
ACGGACGGAGCCAGCACAGGTAGGCGAATGAGTGATATGGACGTTGAGTC
AGTGGAAGAGGGGCTAAACGAGTTAAGAACGTCCAAGAGAGCTGGAATAA
AGGGCGACAGGACGGCCACTACTGTCCTCGATTGCCGCGCGCAAGTCAGG
ATAATTGGAAACGGCCTTCGACGGGAAGTTGATCAAAAAGGGGCGGGAAC
CACCAAGCTCGATAACAAGGCTCATGGAGACAGAAGGCGGACGGGGGGTG
AAAACCGTCGAAGAAAATGCAGTACGACACGGAGCGACACGGCGAACGTG
GCAGCCGTCCAAGCCCGTCATTTGCAGGCGGATGTTATGGCCACGCGGAT
CCTGTGCGAGAAAGCTAAGCTTACAACCGCCAAGTTGGATAGCAAATCGG
CAAATATTCAGGCGCAGTTGGAAATATTGAAGCGGCAGCGCTCCTATCTT
CACAAAGCTCTTCACGCTTTATTGTTTGCTGATGAGAGCGAGGAAACCGA
GAGGAGAAACGGGCGATCTCTTGTTAAGGAGGTGCAAGCTGTGCGGAACA
TGAAGATCGAAGACTTTGAAACCATTCGAGCGAAGGAAAGAGTTGAGGAA
GAACGTGCGAGACGGAGGAAAAATGAATGCATGCAACGTTCAATGCTTGT
GTCGTTAGTGAAGAGCACATGTACCACAGCGTCGAGACCATCCTCTCCAC
CCTCGAGCACCTCCTTTCCTGTCTCTTTGCCACCTTTCAGTAATGCCATT
GCGAGTTAGTTGCTATGCTGTTAGACATGAATGCGAGCTTTTCTACCTCA
CTGTTAGGTTTGGTCAACCTCCAACCCTATCCTTAAGAAATGTGTAAAAA
GAATCCGTGGAATTCAAATCTAATCGACATGTATAAGGCGTAAGGACTAT
AATTTTATTAACTTAAGTTGATTCTGATAGTAAGGAGCAAATTTACGGGC
AACATTGTTTGAGCCGCAGTGAAAGCAGCGTCTCTGTGGCTGCCGCTGCA
CGGGAGA

Coding sequence (CDS) from alignment at CM002458.1:25123..27229-

>rna1749 ID=rna1749|Name=rna1749|organism=Nannochloropsis gaditana|type=CDS|length=1365bp|location=Sequence derived from alignment at CM002458.1:25123..27229- (Nannochloropsis gaditana)
ATGTCGCAAAGATCACCACCGTCTCCACGGAGGACAAAAACTTGTGAACT
TCGCATGGCGCGGGCTAAACCCACGAATAATCCTGCCTCGGAGGCAACAG
ATACTCCTGGCACCCTATATCGGTCAGTAATTTCTACATGCTCTGTGTTG
GAAAATGCTGAAAGCCACGCAGCCTCCAAAAGCAATCGAATTTCGGTATG
GCATGCCCCTACATCGAGATGCTCTTCGGTGTCAACTTCGGCGTCCCCCA
GATCTATGTCGTCTATTATCAATGCTACGGACCCGCTTGCAGATGCCCTA
TCCGCTTGTCACTCTCCTGTGTCTTTGCAGGCTCAGGAGCAATCCTCTTT
GTTTGCAGGCAGCGGCTTCAAGGGAAAGAACTATGGAGCAGGGGACCTTT
GTGAGGACAGAAATGCGCGAGAAGACGAAAGGTTCCTCCAGTCTCAGCTT
TATCTTTCAGGGGCCTCACCAAGGACATCCTGCCCTTCGTTCAGCTCTCC
TACTTCTTTTGACGTCACGAGCGGGTCTGCCACCCCGAGGCCAGCCCGAA
GCAGGGATCGTCTCGACGCTGCCATCTACGAGTCGAGGTCGATGGCAGCT
TTGCTAACGGACGGAGCCAGCACAGGTAGGCGAATGAGTGATATGGACGT
TGAGTCAGTGGAAGAGGGGCTAAACGAGTTAAGAACGTCCAAGAGAGCTG
GAATAAAGGGCGACAGGACGGCCACTACTGTCCTCGATTGCCGCGCGCAA
GTCAGGATAATTGGAAACGGCCTTCGACGGGAAGTTGATCAAAAAGGGGC
GGGAACCACCAAGCTCGATAACAAGGCTCATGGAGACAGAAGGCGGACGG
GGGGTGAAAACCGTCGAAGAAAATGCAGTACGACACGGAGCGACACGGCG
AACGTGGCAGCCGTCCAAGCCCGTCATTTGCAGGCGGATGTTATGGCCAC
GCGGATCCTGTGCGAGAAAGCTAAGCTTACAACCGCCAAGTTGGATAGCA
AATCGGCAAATATTCAGGCGCAGTTGGAAATATTGAAGCGGCAGCGCTCC
TATCTTCACAAAGCTCTTCACGCTTTATTGTTTGCTGATGAGAGCGAGGA
AACCGAGAGGAGAAACGGGCGATCTCTTGTTAAGGAGGTGCAAGCTGTGC
GGAACATGAAGATCGAAGACTTTGAAACCATTCGAGCGAAGGAAAGAGTT
GAGGAAGAACGTGCGAGACGGAGGAAAAATGAATGCATGCAACGTTCAAT
GCTTGTGTCGTTAGTGAAGAGCACATGTACCACAGCGTCGAGACCATCCT
CTCCACCCTCGAGCACCTCCTTTCCTGTCTCTTTGCCACCTTTCAGTAAT
GCCATTGCGAGTTAG

Synonyms

Publications