rna1748, rna1748 (mRNA) Nannochloropsis gaditana

Overview
Namerna1748
Unique Namerna1748
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1697
Alignment locationCM002458.1:22996..25026 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100142g8.2511.mrna
Orig protein idgnl|cribi|Naga_100142g8.2511
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:22996..25026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100142g8gene1681Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28930.1cds1744Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1748rna1748-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1748 ID=rna1748|Name=rna1748|organism=Nannochloropsis gaditana|type=mRNA|length=1697bp
AAAAAGAAATTGTGCTGGGAGGGGGACAGCTCAGCTTGCCCTCTAGCAGG
CGCAAATCAGAATCAAGCCATGTCCCACGAGTATTCTTGAATTCGTCTGT
GGAGCTTGACATTTCTGGGTAGTGAGGCATAAAAATTGCGCTGAACGCCA
TCGATCCAAGGCCCGTCCTACTACTAGTACGTGTCCAAGCCGTCTGTAAC
TCGCCACCCTCGTCAAAATTCCCACTCACTAGGTTCACAAGGGCCTTATT
ATCGACTGAGAAGAGCTTACAAGTCTGCGAGGCTGAGGTGTCAGAGTGGT
CATGGCATCATCACCCCAGGTTCCTCTTGCCGGCGGCATAACCTCCTCCT
CCTTCCCGGTCATCGATCTCACCCAGCCCTCCCTCTCGAATTTGCGGGAA
GCCTGTAAGACGTATGGATTTTTTTATATAAAGGGCCATGGTGTGAAGCC
CTCCCTTTTACAGGCGGCGCTTCGACAATGCAGGGCCTTCTTTGCCCTTC
CTTTGCCACAAAAGCAGGCCTTGGCAGGCCGTGATCACAGCCAAGGCTAC
CAGGCTTTGGGGACAGAAAAACTCAACCATAAGGAGCAAACTCAACCATG
TACTCAAGAGGGCTTTCGGTTGCTCCTGACTCCTCCTTCTTCGGATCAGC
CGTGGCCCGCTCCCTCGCTGCTTCATGACTTCCGCCCTGTCCTGGAAGAG
TACCATGCCGCCATGGAGAGCGTCGCGCATCGCGTCCTACGACTCATAGT
GTCCTCAATAGGCTTGCCTCCAGATTATTTGCATGACAAGATACACGCCT
TCCATCCCCAGGCGGCAGCGACGACCCGCCTGTTGCACTACGCCCCGATA
CCCTCCTCTGTGGAAGATGGAGTGTTCGGATGCGGGGCCCATACGGACTG
GGGTTGTCTCACCTTGCTGCTGACCGAAGACGAGGGGCTGGAAGTTGTTT
GCCGCCCCGAGGGAGGGGAGGGGGGGACGTGGGTGCGCGTGCCGCCCTGT
CAATCGCCAGGCGGGGAGCGGGGGAAGGTCAAGAGAGATATTCGACCGGG
CTCGAGGGAGAAGGCATGGAGCGACGGAAGTCAGGCAGGAGCAGAGGCGT
GCGGTCAGGGGGTGGAATCGGAGTGGCTTTTGATATGTAACCTGGGCGAC
CTCCTTCAACGATGGACAAACGACTTTTTACGCTCCACCCCCCATCGGGT
CGTGAACAGGGAAGGAAAAGATCGTTTCTCCATCCCCTTCTTCTTCTCCG
CCAGCCCCACCGCGGTGGTCGAGTGCCTGCCCCCTTTTCGTGGAATCGGA
TTGAAGAACGGGGTCCAGGAGGAGGACGATGGGAAGTCGAGGGATGGGGG
GAAATATCCGCCCATCCTGGTGTCGGAGTACGTGGCTGAGAGGCTTCGGA
CCGCCACAGTGGGTCGACGACTCGAGAAATAGCGGGAGGGTTGGCTGGGT
GCTGCAGGAATCAGAGTGTTCCCTGCCCTCGGCGTCCGCGAGGCAGGAGG
TTTGTTACCGTGGAAGGGCGGGGCAGGCGAAGAGATGAGATAGAGCGCCA
GCACCCTCTGTCACGGGCCTTCGCATCGACTTCTATCTTGCATGTGTATT
ATAGCATAATGGAAGTATGAAAGTCTGTATGAAAGGTGAATGGGAACTCG
TTTGGCGCGTTTATAAAATACAAATGTAAGTAATAGTACCAGCTGCA
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protein sequence of rna1748

>rna1748-protein ID=rna1748-protein|Name=rna1748|organism=Nannochloropsis gaditana|type=polypeptide|length=281bp
MLRLKAPLRYAARQAPLSLLVFFVHSTLISCARSNAVRTGSNIRFEIHDS
SSLLRPQYGRLLHHGFPLSFISPPQAPAPTHSPSSGENGNGPFARRRRRK
AKSDLESVGRNQNVKTKRSSKVQPFSPINELAISTATTSSSSSKHFFFDF
SVPKGHNGMAFPAHPAKMTEQGPAAPARSPNTLLEPPSSHAKTLAGGWHQ
IWTSLAGGEMPPPEGGEGGGGTTWSSRCCWRPSPLSMVPILAPSNTWMQL
TWTCPSSPPSGLRWLPCRFVLSCTRPLCPWS
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mRNA from alignment at CM002458.1:22996..25026-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1748 ID=rna1748|Name=rna1748|organism=Nannochloropsis gaditana|type=mRNA|length=2031bp|location=Sequence derived from alignment at CM002458.1:22996..25026- (Nannochloropsis gaditana)
CAAAGCAATTGATGTACCGCATACACACAGATGTCCACTTAAATTCAGTT
CCTCAGCTTTGAAGTCTGCATCGAAGCTAAAGGAGAACCTTGATCTTCGA
GCTTGTGGCGGTTAGGCAGGCGTCAACTTCACTATCAAGGAAGGAGAACG
GTCAACTCCTACATAAATGCTACGGCTAAAAGCACCATTACGCTATGCGG
CCCGTCAGGCTCCGTTATCTCTCCTTGTTTTCTTTGTACATTCCACCTTG
ATATCTTGCGCCCGATCAAATGCAGTGAGGACCGGCAGCAACATCAGATT
TGAGATACACGACTCTTCAAGTCTACTTCGTCCTCAATATGGTAGACTCC
TTCATCACGGGTTCCCCCTCTCGTTCATATCTCCTCCTCAAGCGCCTGCA
CCAACGCACTCTCCTTCGTCAGGAGAAAATGGCAACGGCCCTTTCGCGAG
GAGGAGAAGAAGAAAAGCAAAAAGTGATCTCGAAAGCGTCGGCCGTAATC
AGAACGTGAAAACAAAACGGAGCAGTAAGGTACAGCCTTTCTCGCCTATC
AATGAGTTGGCCATTTCCACTGCTACCACTTCATCCTCCTCGTCTAAACA
TTTTTTCTTCGATTTTTCAGTGCCGAAAGGTCATAATGGCATGGCTTTCC
CCGCGCATCCAGCAAAGATGACGGAACAAGGCCCTGCCGCTCCTGCCCGC
TCTCCTAACACCCTTTTGGAACCTCCCTCCAGCCATGCCAAAACTCTGGC
GGGCGGCTGGCATCAGATCTGGACGAGTCTGGCGGGTGGGGAAATGCCAC
CGCCAGAAGGAGGAGAAGGGGGGGGGGGAACAACCTGGTCTTCAAGGTGC
TGCTGGCGGCCGTCGCCCTTATCTATGGTACCAATTTTGGCGCCATCAAA
TACTTGGATGCAGCTCACGTGGACGTGTCCATCGTCACCGCCATCCGGTT
TGCGCTGGCTACCCTGTCGCTTTGTCCTTTCTTGTACAAGGCCCCTATGC
CCGTGGTCATGAGGGGACTGGAAGTGGGAATGTGGGTGGCTGCCGGTTAC
ATCGCGCAAGCCATCGGGCTTCAAACCACGCAGTCCTCCAAATCTGCCTT
CATCTGCTCCCTGGCTGTGGTGGTGGTCCCCATCGTCAACGCCATCGTCT
ACAAGAGGAAAGCCCCGCCCACGGCGTGGCTGGCCGCTGTCCTTGCGGTC
TTGGGGGTCGGACTCATGACCCTGGAGGGGAAAGGGACGCCACCCTCCAT
CGGAGACCTGTGGTCGATGGGCCAGCCACTTGGCTTCGGCATCGCCTTTG
TCCGGAGCGAGCAGTGCATGCAAGAGAACAAGAGTCAGGCCTTGGCGATG
ACGGCGGCCCAGATGGTCGCCGTCATGGCCGTCTCCATGCTCTGGGTCTC
CTTCACCCTCACAGCCAACACACCCAGCATCTCCGCGCTCTATGAGCCGG
TGAACATGGCTGCCCTCTTCTACACCGGCGTGGTCACCAGTGCTCTGGCG
GTGGTGGGGGAGAGCATTGCCCTGGCCCATATCTCCGCGGAGGAGACGAC
GGTGATCCTCTCTACGGAACCCCTGTGGGCGGCTCTCTTCGGCGCCATGC
TGCTCGGGGAGAAGATGAATGGGTTTGGGTACCTGGGTGGCGCGACCATC
CTGCTGGGTTGCCTCCTGACGCAGTTGAAACTCCCCAAGGGGCTGGAGAA
ACTGCTTGGACCGTTGGAGGAGGGAGGGGAGGCGTGAGGGGGTTGGGACC
AGACAGGTACTATGCAAAGTCGGATAAGGTCGCATAGCAGTAGCTGAAGG
GGGATGAATAAGGGCGTGCTGGATGCGAGCTCTCTCTGGCTCTAAGGTAA
GGTGCTAAGGAGCAAGCCAGTCATGGTGAATCGTCGACCGTTTCTCCAGA
AAAAGTCATTGAATCGACGCATACTTTTGGCTGTATGCATAGAAATATGA
AACATCTGTCCAAACTTGACGGTATAATACGGGCATAATGTGAGATTAAA
GAAAAGAACAAATATTTATGGCATCGATCAA
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Coding sequence (CDS) from alignment at CM002458.1:22996..25026-

>rna1748 ID=rna1748|Name=rna1748|organism=Nannochloropsis gaditana|type=CDS|length=846bp|location=Sequence derived from alignment at CM002458.1:22996..25026- (Nannochloropsis gaditana)
ATGCTACGGCTAAAAGCACCATTACGCTATGCGGCCCGTCAGGCTCCGTT
ATCTCTCCTTGTTTTCTTTGTACATTCCACCTTGATATCTTGCGCCCGAT
CAAATGCAGTGAGGACCGGCAGCAACATCAGATTTGAGATACACGACTCT
TCAAGTCTACTTCGTCCTCAATATGGTAGACTCCTTCATCACGGGTTCCC
CCTCTCGTTCATATCTCCTCCTCAAGCGCCTGCACCAACGCACTCTCCTT
CGTCAGGAGAAAATGGCAACGGCCCTTTCGCGAGGAGGAGAAGAAGAAAA
GCAAAAAGTGATCTCGAAAGCGTCGGCCGTAATCAGAACGTGAAAACAAA
ACGGAGCAGTAAGGTACAGCCTTTCTCGCCTATCAATGAGTTGGCCATTT
CCACTGCTACCACTTCATCCTCCTCGTCTAAACATTTTTTCTTCGATTTT
TCAGTGCCGAAAGGTCATAATGGCATGGCTTTCCCCGCGCATCCAGCAAA
GATGACGGAACAAGGCCCTGCCGCTCCTGCCCGCTCTCCTAACACCCTTT
TGGAACCTCCCTCCAGCCATGCCAAAACTCTGGCGGGCGGCTGGCATCAG
ATCTGGACGAGTCTGGCGGGTGGGGAAATGCCACCGCCAGAAGGAGGAGA
AGGGGGGGGGGGAACAACCTGGTCTTCAAGGTGCTGCTGGCGGCCGTCGC
CCTTATCTATGGTACCAATTTTGGCGCCATCAAATACTTGGATGCAGCTC
ACGTGGACGTGTCCATCGTCACCGCCATCCGGTTTGCGCTGGCTACCCTG
TCGCTTTGTCCTTTCTTGTACAAGGCCCCTATGCCCGTGGTCATGA
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Synonyms
Publications