rna1747, rna1747 (mRNA) Nannochloropsis gaditana

Overview
Namerna1747
Unique Namerna1747
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1889
Alignment locationCM002458.1:21299..22995 +

Link to JBrowse

Properties
Property NameValue
Productisopenicillin n synthase
Orig transcript idgnl|cribi|Naga_100142g9.2510.mrna
Orig protein idgnl|cribi|Naga_100142g9.2510
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:21299..22995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100142g9gene1680Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1747rna1747-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28929.1cds1743Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1747 ID=rna1747|Name=rna1747|organism=Nannochloropsis gaditana|type=mRNA|length=1889bp
ACGCGCTAGTCGAACACATGCTACAGAGCCCCCCAAAAGGTACCACACAA
CACAATGATCATGCGCAATATTGCCCGCGTTGGCATCAACGTCCTGGTGC
GCCCTCCCGTGGTAGACGGGGAATTGACGAAGATCTCCCTTGCCGACTAC
AAGGGCAAATACGTAGCTTTGCTTTTCTATCCTAAGGATTTTACATTCGT
CTGCCCGACGGAGATCATCGCGTACTCAGATGCTGCCCATCGCTTTGAAG
AAATCGGCGCCAAGGTGATCGGCATCTCTACCGACACGGAAGAATCGCAC
CTGGCGTGGGTGCGCACGCCCCGCAAGAGAGGAGGCTTGGGTCACATGCA
GATCCCCCTGGTCGCCGACGTGACCAAGACCATCGCCGCGGACTACGGCG
TGCTCCTGGAGGACATTGGGATAGCCTTGCGGGGCCTCTTCCTCATCGAT
CCGGAGGGGGTGCTGCAGCAGATTACGGTGAACAACCTCCCTGTCGGCCG
TAATGTGGACGAGACCATTCGACTCATCCAAGCCTTCCAATTCGTGGCCA
AACACGGCGAGGTGCGTGGGGATGGGAGCCTGAAGGAGCAGAAAGGGGGG
TCGAGGAAAAGGGGAGAGGATGGGGGACGAAGGGATAGGGAATGGGGAGG
GGCCAGAGGCGCCCTGGAGGGGGGGTCCCTGCCGACCGTGGAGACTGGGA
TCGCCGCACAAGGGGCGTCTCCTAGGGGGAGACCGTGGCATGAAGCTGTC
GTCGTCCGCAGGGCGAGCGGCATATTTTAATTGCGCGCACTTTGGCCCTC
CGTATCCACCTGTCTGTCGTGTCCCCGGTCCCCCCTCATTCTCCATCTCT
TCGTTGATACTCCCAGGTCTGCCCCGCCGGGTGGACGCCCGGTGACAAGA
CCATGAAGGCCGACCCTGAGGGCTCGTTGGAATACTTTGCCTCGGGCGCC
ACGGAAGAGAGCGAGCAGGACCCCTTGGCGGGCGGCCCGCACATTGTCAC
GGCCAAGGACGGGAAGCACCTGAAGGAGCTCCTGGGGAAGAAAGGAAAGG
TGGTCTTGGACTTCGTGGCAGGCTGGTGTGGCAAATGCAAGCAGATCATG
CCTTTTGTCAACGATTTGAGCGAGGCACATGCGGGCGAGGTGACCTTTGT
GAAGATAGACACGACCGAAGACGCCTTGGCGGAGGCCGTGGCTGAGCACG
GCGTCTCGGTGCTGCCAGCCTTCCATTTTATCAAGGACGGGAAAATCTAT
CGCCCTCCTGTGGTGGGGTACAAGAAAACGCCTCTGAAAGAGGGAGTCAC
CGCCTTGGCGAAAAGCTGAATGCACAGAAACGGAGGATGAAGGCAAAAGG
AGTCAGGTCGGGGGGTATCTGATGGGATTATTTTGAGGTACAGGATATCT
TGCTGCTGCGTTAAAAACTGAGCTGGTTTGGTTTTATTTCCAGCAGAAGC
GTGAGATGGAAAGAAATAGTGGAAAAAAATGGAAGCTACCGTGCAGGAGT
GAAAACGTGCATTTTCCATGCCCTTGTCCGTTTTTGCTTCTAGAAGATGA
GCCTTCCCACAAACCAATCCATTTTTCCTCTTTGCGGCGTATAAGCTTGC
ACAGCAGCATTCGAGACGTAGCGTTCTGGCAGTGCAAGTCATTTTTCCTC
CAATGACGGAAGATTCGTGCCGTTGTAGAGGAATTTTAAGGGTTTACACA
GATGACAATATGTAGCGGTAAAATAGACCCGCAATCTGAGGATGACATCG
AGGGAGATGCTGAATACGAGTTGACTACCTAAAAAGGGCTCTAGATCCGT
ATAGAGGCGTTTCCGAGAGATTCAAAGGCTTTGGTACCCTTTAATGAGGA
CCTGCAAGAACGTCAAGTTGAGTGGTATTAAAATATTGC
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protein sequence of rna1747

>rna1747-protein ID=rna1747-protein|Name=rna1747|organism=Nannochloropsis gaditana|type=polypeptide|length=376bp
MASSPQVPLAGGITSSSFPVIDLTQPSLSNLREACKTYGFFYIKGHGVKP
SLLQAALRQCRAFFALPLPQKQALAGRDHSQGYQALGTEKLNHKEQTQPC
TQEGFRLLLTPPSSDQPWPAPSLLHDFRPVLEEYHAAMESVAHRVLRLIV
SSIGLPPDYLHDKIHAFHPQAAATTRLLHYAPIPSSVEDGVFGCGAHTDW
GCLTLLLTEDEGLEVVCRPEGGEGGTWVRVPPCQSPGGERGKVKRDIRPG
SREKAWSDGSQAGAEACGQGVESEWLLICNLGDLLQRWTNDFLRSTPHRV
VNREGKDRFSIPFFFSASPTAVVECLPPFRGIGLKNGVQEEDDGKSRDGG
KYPPILVSEYVAERLRTATVGRRLEK
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mRNA from alignment at CM002458.1:21299..22995+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1747 ID=rna1747|Name=rna1747|organism=Nannochloropsis gaditana|type=mRNA|length=1697bp|location=Sequence derived from alignment at CM002458.1:21299..22995+ (Nannochloropsis gaditana)
aaaaagaaattgtgctgggagggggacagcTCAGCTTGCCCTCTAGCAGG
CGCAAATCAGAATCAAGCCATGTCCCACGAGTATTCTTGAATTCGTCTGT
GGAGCTTGACATTTCTGGGTAGTGAGGCATAAAAATTGCGCTGAACGCCA
TCGATCCAAGGCCCGTCCTACTACTAGTACGTGTCCAAGCCGTCTGTAAC
TCGCCACCCTCGTCAAAATTCCCACTCACTAGGTTCACAAGGGCCTTATT
ATCGACTGAGAAGAGCTTACAAGTCTGCGAGGCTGAGGTGTCAGAGTGGT
CATGGCATCATCACCCCAGGTTCCTCTTGCCGGCGgcataacctcctcct
ccttcccggtcATCGATCTcacccagccctccctctcgaatTTGCGGGAA
GCCTGTAAGACGTATGGATTTTTTTATATAAAGGGCCATGGTGTGAAGCC
CTCCCTTTTACAGGCGGCGCTTCGACAATGCAGGGCCTTCTttgcccttc
ctttgccaCAAAAGCAGGCCTTGGCAGGCCGTGATCACAGCCAAGGCTAC
CAGGCTTTGGGGACAGAAAAACTCAACCATAAGGAGCAAACTCAACCATG
TACTCAAGAGGGCTTTCGGTTGCTCCtgactcctccttcttcggaTCAGC
CGtggcccgctccctcgctgcTTCATGACTTCCGCCCTGTCCTGGAAGAG
TACCATGCCGCCATGGAGAGCGTCGCGCATCGCGTCCTACGACTCATAGT
GTCCTCAATAGGCTTGCCTCCAGATTATTTGCATGACAAGATACACGCCT
TCCATCCCCAGGCGGCAGCGACGACCCGCCTGTTGCACTACGCCCCGATA
CCCTCCTCTGTGGAAGATGGAGTGTTCGGATGCGGGGCCCATACGGACTG
GGGTTGTCTCACCTTGCTGCTGACCGAAGACGAGGGGCTGGAAGTTGTTT
GCCgccccgagggaggggagggggggacgtgggTGCGCGTGCCGCCCTGT
CAATCGCCaggcggggagcgggggaaggtCAAGAGAGATATTCGACCGGG
ctcgagggagaaggcatgGAGCGACGGAAGTCAGGCAGGAGCAGAGGCGT
GCGGTCAGGGGGTGGAATCGGAGTGGCTTTTGATATGTAACCTGGGCGAC
CTCCTTCAACGATGGACAAACGACTTTTTACGCTCCACCCCCCATCGGGT
CGTGaacagggaaggaaaagatcgtttctccatccccttcttcttctccg
ccagcCCCACCGCGGTGGTCGAGTGCCTGCCCCCTTTTCGTGGAATCGGA
TTGAAGAACGGggtccaggaggaggacgatgggaagtcgagggatggggg
gaaatATCCGCCCATCCTGGTGTCGGAGTACGTGGCTGAGAGGCTTCGGA
CCGCCACAGTGGGTCGACGACTCGAGAAATAGCGGGAGGGTTGGCTGGGT
GCTGCAGGAATCAGAGTGTTCCCTGCCCTCGGCGTCcgcgaggcaggagg
tttgTTAccgtggaagggcggggcaggcgaAGAGATGAGATAGAGCGCCA
GCACCCTCTGTCACGGGCCTTCGCATCGACTTCTATCTTGCATGTGTATT
ATAGCATAATGGAAGTATGAAAGTCTGTATGAAAGGTGAATGGGAACTCG
TTTGGCGCGTTTATAAAATACAAATGTAAGTAATAGTACCAGCTGCA
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Coding sequence (CDS) from alignment at CM002458.1:21299..22995+

>rna1747 ID=rna1747|Name=rna1747|organism=Nannochloropsis gaditana|type=CDS|length=1131bp|location=Sequence derived from alignment at CM002458.1:21299..22995+ (Nannochloropsis gaditana)
ATGGCATCATCACCCCAGGTTCCTCTTGCCGGCGgcataacctcctcctc
cttcccggtcATCGATCTcacccagccctccctctcgaatTTGCGGGAAG
CCTGTAAGACGTATGGATTTTTTTATATAAAGGGCCATGGTGTGAAGCCC
TCCCTTTTACAGGCGGCGCTTCGACAATGCAGGGCCTTCTttgcccttcc
tttgccaCAAAAGCAGGCCTTGGCAGGCCGTGATCACAGCCAAGGCTACC
AGGCTTTGGGGACAGAAAAACTCAACCATAAGGAGCAAACTCAACCATGT
ACTCAAGAGGGCTTTCGGTTGCTCCtgactcctccttcttcggaTCAGCC
GtggcccgctccctcgctgcTTCATGACTTCCGCCCTGTCCTGGAAGAGT
ACCATGCCGCCATGGAGAGCGTCGCGCATCGCGTCCTACGACTCATAGTG
TCCTCAATAGGCTTGCCTCCAGATTATTTGCATGACAAGATACACGCCTT
CCATCCCCAGGCGGCAGCGACGACCCGCCTGTTGCACTACGCCCCGATAC
CCTCCTCTGTGGAAGATGGAGTGTTCGGATGCGGGGCCCATACGGACTGG
GGTTGTCTCACCTTGCTGCTGACCGAAGACGAGGGGCTGGAAGTTGTTTG
CCgccccgagggaggggagggggggacgtgggTGCGCGTGCCGCCCTGTC
AATCGCCaggcggggagcgggggaaggtCAAGAGAGATATTCGACCGGGc
tcgagggagaaggcatgGAGCGACGGAAGTCAGGCAGGAGCAGAGGCGTG
CGGTCAGGGGGTGGAATCGGAGTGGCTTTTGATATGTAACCTGGGCGACC
TCCTTCAACGATGGACAAACGACTTTTTACGCTCCACCCCCCATCGGGTC
GTGaacagggaaggaaaagatcgtttctccatccccttcttcttctccgc
cagcCCCACCGCGGTGGTCGAGTGCCTGCCCCCTTTTCGTGGAATCGGAT
TGAAGAACGGggtccaggaggaggacgatgggaagtcgagggatgggggg
aaatATCCGCCCATCCTGGTGTCGGAGTACGTGGCTGAGAGGCTTCGGAC
CGCCACAGTGGGTCGACGACTCGAGAAATAG
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Synonyms
Publications