rna173, rna173 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna173
Unique Name	rna173
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2047
Alignment location	CM002455.1:455015..457988 -

Link to JBrowse

Properties


Property Name	Value
Product	short-chain dehydrogenase reductase family protein
Orig transcript id	gnl\|cribi\|Naga_100013g45.9776.mrna
Orig protein id	gnl\|cribi\|Naga_100013g45.9776
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:455015..457988 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100013g45	gene165	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30488.1	cds173	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna173	rna173-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:455015..457988-
coding sequence from alignment at CM002455.1:455015..457988-

mRNA sequence

>rna173 ID=rna173|Name=rna173|organism=Nannochloropsis gaditana|type=mRNA|length=2047bp
AAATGCGACGCCGTTGATTGAAGAATACTTACCCCTGCCCCCTATACCAC
AGGTCAAATTATGCCGCTTTCGTCAGCCTTGCTTGACTACCTACCGGCGT
TCGGGCCACCGCACGAAGACGAGCTTTTTTTGACGTTTTATCCCGTCTCA
TCTTCCTCCTCCGCCTCCTGCCACACCCCCGCCTTCAAAACGACCTGGTC
CCGGCGGGAGCTATGGGAACTGAGTCGCCGCTTTGCCTACGTCCTGACTA
AGCAGGCAAAGCTTAAGAAAGGGGACTGCCAAGTGCACTTATTTGCTGGA
AACAGCGCGGAAGATGTTGCTTTACGTCTGGCGTCCGTGATGACGGGGAC
TGTTCCCGTAACAGTGAACTGGGACTCTGACCCTCTCGACCGCGTCGTCT
TCAAAGTGCAGAGCAGTCGCGCGAAAGTTGTGTTGATACATGCCAAAACA
CCTCTAGAGCAGGTAGCGGAAGTGCGGTCGAAGATACCGGGGGTAGCCGT
GATGGCTGTGGAAGACATGCTTGAGCACGGCAGAGGCGAAGAGGGGCAGC
AGGCAGCAGACGTTGCGTCCGACGAGGATTTGTTTGAGTCAGACCTTGGC
AAGGATGACACCCGTATTATTATTTATACTTCGGGGAGCTCGGGTGAGCC
CAAGGGCGTCCGCCTTTCCTATGGGAACTACGTGAGGAACCGGGAGACGT
TCGAGGCCTTCCTCCTCCTTCAAGACCCCGCATCTCGCTTCACGCCCTTT
TTGGCCAACCCCTTGCATCACACCAACTCAACCGCTTTCACGGACTGGGC
CTTGCGTCGCCCCGGCACCCATCTGCACCTCTTCGAACGCTACACGACGT
CCTACTGGCCCGCCCTCGCACGTCTCGCCCTAGGTCTCCCACGCTCCGCG
CCCCTCCCTTCCACGCCCTCCGTGGCTCAGCCCCTGGTCACAGCCCAACA
AGCCAGCAAGCTTCACCTTGTGTGTCCCACGGTCAGCCGGCATTTCGATT
TCTTGGAGAGCCTGATCGAGGAGAAGAAGCTTGCCGACGTCCCCAACCCG
GACGTCCTCAAGTGGGTTTCCCCGGTCGTCACCTTCCTGCTGGGCTCGGC
ACCGGTGGGGCCCGCAACGGTGCAGCGTCTCCTCAAATACGTGGGCCACT
TGCCTGTCGTGCGCTTCGGGTCGACCGAGACGTGCCTGCAGGTGATGGGT
ACGCCCACGGACGTGAGCGAAGAGGAGCGGTTGCACGCCTTCCAAAGGGG
CTGGGCGGTGGGGGAGCAGCCGGGCGAGGAACCTGGTTTCTACGTGGGCC
GACCGCACCCACCTTACACAGAAGTAATGGTGGTGGAAGGCATCGACCCC
GCGGCGCCAGCGTCCTACTTGCAGGAGTGCAGAGAAGGCCAAAAGGGGTT
TATTGTGACTCGGGGAAATTTGATGACGGGCTACGTACAAGGGGAGGCGG
CGACGAAGCAGGCGATCCACACGGAGGCGGGCGGCTGGTACACAAACCTT
GGAGACGTGGGCTTCTGGTTGTGGGACGGAGAGAGGAGGGAAGGAGGGAG
CGGGGCAGGAGGCGGGAGGAAGAAGGACTTCTACTGGGTGACACGCACGT
CCAACCTCTTGATCCGAGGTGGCACCAACTACTCGTACGAGCAGATCACG
CGGGAGCTTACGCTCTTTACGGAGGAGAGGTACGGTTTGCTTCCGGGTAG
TTTTGCGCTGGCGGCCGTCGGGTTGCGGGTGGGGAGCGAGCATGAGGATG
ACTGCCTGGTGACGATTGAGATACAGTCCGCGGAGGATCATGGGGAAGGC
AATGACGGGAGGGGTGTAAGCAAGGATAAGAGGCTGGAGGTCGAGAAGAA
TTTTGTGAGGGATGCTAAGGGATGCGTGTCCAAAGGTGCACAACCGTCTC
GGATGCGGTGGGGTGCGGTACCGCGCAATTTCAAGGGCGACGTAAATTGG
CGAGTTCTGGAGGCGGATTGGAAAGCCACGCTCGCACAGGATAAGGATTC
TGGTAAATAGATGAAAAAAGCTACCAACACAAGCACAAGCTTGCAAG

protein sequence of rna173

>rna173-protein ID=rna173-protein|Name=rna173|organism=Nannochloropsis gaditana|type=polypeptide|length=315bp
MAFPVLLFVLLFPLVHGFTPRITAVVTGGNRGLGLAISDLLAEVGYHVIL
TARNAEEGQARVADIQRRHGQNRCEFMALDVSEPKSIKAFVDQMKRNEEM
RGGVPHVLINNAGICVRDEDAAAAVEGSGGREGVYRSVFDINTWAPVALM
EACLPGMCKHGFGCIVNISSGDGELAYLHSEVAKRLKRVRSLAELKQFSD
WVAQMQQEGPWPRGEGLAPVSWPAYSFSKAVLNAATRLLQSRVDALVSKD
MKVRAHQPRIVAICPGDVNTAMCDEHAAHDALSPEQAALDVVWAVLHSKE
CHGGYFYRARRAIPW

mRNA from alignment at CM002455.1:455015..457988-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna173 ID=rna173|Name=rna173|organism=Nannochloropsis gaditana|type=mRNA|length=2974bp|location=Sequence derived from alignment at CM002455.1:455015..457988- (Nannochloropsis gaditana)
AAGCATTACATATCCGGCTTTTATGAAATTTGAGACTCGGTGTCTGACCA
TTTTACTCAATCATGAATGAAATCTTACGGGTCCGGGGATCCGGAGAATT
ATTGGTGTCACACAAGAGCGCAAGCTGCAACCTCACTGGCAACAGCCAGA
GGCGATGGAATGTCCTCGGTCCCAGCGATGTGTGGAGCCTATTTCCAACG
ATTACATTGGTTGTTGTTTCACTTTGAGACTCACTAACGCCGATGTCTAC
GCATGTGATCTATCGCACAGGCTCTCAATGACGTAAAAGTGGACCACCGC
TTTTGTGGCGGTGATTCGTCCCCCGGGTGGAGACCTCAAAAAAGGGGAGG
TAATGGCGTTTCCTGTCTTGCTCTTTGTTCTTCTCTTTCCACTAGTTCAT
GGATTCACACCGCGCATTACCGCCGTCGTTACGGGTGGCAATCGCGGTCT
GGGTCTGGCCATTTCCGATCTGTTGGCTGAAGTGGGGTACCATGTCATTT
TAACTGCGCGGAATGCAGAGGAGGGCCAAGCTCGTGTGGCAGACATACAA
CGCCGACATGGTCAAAATCGTTGTGAGTTCATGGCTTTAGACGTCAGTGA
GCCTAAAAGCATCAAGGCTTTTGTCGATCAAATGAAGCGGAACGAGGAGA
TGCGGGGAGGGGTGCCTCACGTTTTGATTAACAATGCCGGCATATGTGTG
AGAGATGAAGACGCAGCTGCCGCCGTAGAGGGCAGTGGAGGAAGAGAGGG
AGTCTATCGCTCCGTTTTCGACATAAATACATGGGCACCGGTGGCGTTGA
TGGAGGCCTGCTTGCCCGGAATGTGTAAACACGGGTTTGGTTGCATTGTA
AATATATCAAGTGGCGACGGAGAGCTCGCATACCTGCACAGTGAGGTTGC
CAAGAGGTTAAAGAGAGTGCGAAGCCTAGCTGAATTGAAACAATTCTCGG
ACTGGGTCGCGCAGATGCAACAGGAAGGTCCGTGGCCACGCGGTGAGGGT
TTGGCGCCCGTTTCTTGGCCGGCTTACAGCTTTTCGAAAGCAGTTTTGAA
TGCAGCGACTCGGCTGCTGCAAAGCAGGGTTGATGCACTAGTTTCTAAAG
ACATGAAAGTGCGGGCGCATCAACCCCGAATAGTTGCCATCTGTCCGGGA
GACGTCAACACCGCCATGTGTGATGAGCATGCCGCACACGACGCGCTTTC
TCCCGAGCAAGCAGCATTAGATGTCGTATGGGCGGTGCTTCATTCTAAGG
AATGTCATGGAGGATATTTCTATCGAGCAAGAAGAGCCATCCCGTGGTAA
AAAAATCCTGGCCAAGCGCAGGATGTATTTAATTATGTCGCAAGAGCGCT
ACTGACACGAACTTTCCATGCAACGTCGAGGAGGGCGTCAATTCGTCAAG
GAAAACGAATAATTGGCATCATGATTGTTTATAAAAAAGTTCAAGACCTC
GTCTCAGAACGAAAAGTTTAGAACAATTTGTTTTACTGTTTTAGCTGTGT
CGCCGCATTAAGCTACCCGGGAGTTTCGCGCAAAAAGCCAATAAAGCAGC
AAGGCGGGCAGGCAAAGCCAAACGCCTCGTATCACAGGTGCGCACATGCT
TTGAATGCACCAGGCCGCTCCATTTCACGTCCGTGTCACTATCAGGCTCT
AAACACTTCTTGCGATCAATTTCATAAAATCATGACTCGGAGGATCGCGG
GAGAAGTGAAGAAAGCGCAAGGCCAAGGAATGCACAGCGTAACATTCAGC
GGCCATGCACGTCGTTTCCTTCGCAAAATCAGTATGAAAACGGTGCTGCA
CCCCTAGAACGCTTACGCTTGCATTTTTACAGACAGATGAATGGTCATAA
TGGCAAGGTTAGAGCCAGTTCGTTTGCTTGCTCCGTTGTCGCACAACGTG
ACGCTTCGAAAACCGGTATATAACCAGGCCTTGCTAGGCAATTGTTTGCT
GGGGCAAACGTTAATCGGTGTACAACTTTATGTATAAAACATTGGTTACC
CTTAATTGTTTTAAAATGAATGTCAGCCGAAACGCATTTATTTAATTCCA
CTCCTTCTATGCCCTATTCCCAGGCCCAACCTTGCTCAAGGCCAGACGAG
CTCAAGATGATTCCTGTCAACACGGCGATGGCTCAGAAGTACGCATCTCA
AATGATGAAGAAAGTAACCGGGGAGGCCATGCGCTTGGCACCTTGGGGTG
CTCCAGCTGGTAAGGATTCTATTGGGCGGGAAAAGGTTGGTATGAAGAGT
GCTCATCGAAAATCGGTAGGACGGTGTCGCTTTCAGCCATCTTACATGCC
GAGAATTTGTGCAGTATAGAGCTGTCAGCGTGTGCCCGGTGTTCACCTTG
GAGAATTCTCGAGACACTTGGATGAACTCCGTGGGATAGTCTAAAAGTAG
CGAGAATCTAGTCCCACCTTTGCTTTTTCCACTTTCACAAGATCTGGCCT
CCTTTTGTGCTGTTAGACGTGTTGGAATGTCGTCAAGTCAGCCCGCTCAT
TTCCTGTCGTTGGTACACTACATCCCAGGTATCATGGTCTGCTGGATGGT
GTATCCGGCTCTCACAGCAGATTTCAAGAAAAGTGTTGGGCTCCCCTACG
ACCCTAAGGATCTGTCTGCTTAGAGTATCGCATGCGCCGGGTACACTGTG
GGATAGAATTGGATATGCAGTGAAGGGTTGAATGATGCGTGTATAACCTG
AAAGTTGGTGCGCTGGAAGACGCTCTGGATGAAGGGTTTAGACGGATCCA
AAGAAGGAATTTTAAAGGGGCCTGCGTGGCGAGAAGCGATTTTCCTGGCT
GTTAGGGTTTGCTTTTTTGTTGTGCGAGAGTCGTTCATGCATATCTGGGA
AGACTCGAATACTTGATACGGATTTTAATCTGAATAAGGCAGCACATTTG
TGCACTGTCCTGAGCGTGTGCTTTGCACGACGACAACTCATCGTACGTCG
ACACAGCCACAATACGGCAACAAC

Coding sequence (CDS) from alignment at CM002455.1:455015..457988-

>rna173 ID=rna173|Name=rna173|organism=Nannochloropsis gaditana|type=CDS|length=948bp|location=Sequence derived from alignment at CM002455.1:455015..457988- (Nannochloropsis gaditana)
ATGGCGTTTCCTGTCTTGCTCTTTGTTCTTCTCTTTCCACTAGTTCATGG
ATTCACACCGCGCATTACCGCCGTCGTTACGGGTGGCAATCGCGGTCTGG
GTCTGGCCATTTCCGATCTGTTGGCTGAAGTGGGGTACCATGTCATTTTA
ACTGCGCGGAATGCAGAGGAGGGCCAAGCTCGTGTGGCAGACATACAACG
CCGACATGGTCAAAATCGTTGTGAGTTCATGGCTTTAGACGTCAGTGAGC
CTAAAAGCATCAAGGCTTTTGTCGATCAAATGAAGCGGAACGAGGAGATG
CGGGGAGGGGTGCCTCACGTTTTGATTAACAATGCCGGCATATGTGTGAG
AGATGAAGACGCAGCTGCCGCCGTAGAGGGCAGTGGAGGAAGAGAGGGAG
TCTATCGCTCCGTTTTCGACATAAATACATGGGCACCGGTGGCGTTGATG
GAGGCCTGCTTGCCCGGAATGTGTAAACACGGGTTTGGTTGCATTGTAAA
TATATCAAGTGGCGACGGAGAGCTCGCATACCTGCACAGTGAGGTTGCCA
AGAGGTTAAAGAGAGTGCGAAGCCTAGCTGAATTGAAACAATTCTCGGAC
TGGGTCGCGCAGATGCAACAGGAAGGTCCGTGGCCACGCGGTGAGGGTTT
GGCGCCCGTTTCTTGGCCGGCTTACAGCTTTTCGAAAGCAGTTTTGAATG
CAGCGACTCGGCTGCTGCAAAGCAGGGTTGATGCACTAGTTTCTAAAGAC
ATGAAAGTGCGGGCGCATCAACCCCGAATAGTTGCCATCTGTCCGGGAGA
CGTCAACACCGCCATGTGTGATGAGCATGCCGCACACGACGCGCTTTCTC
CCGAGCAAGCAGCATTAGATGTCGTATGGGCGGTGCTTCATTCTAAGGAA
TGTCATGGAGGATATTTCTATCGAGCAAGAAGAGCCATCCCGTGGTAA

Synonyms

Publications