rna1726, rna1726 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1726
Unique Name	rna1726
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1177
Alignment location	CM002457.1:1347779..1348796 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100389g4.6883.mrna
Orig protein id	gnl\|cribi\|Naga_100389g4.6883
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:1347779..1348796 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100389g4	gene1660	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28949.1	cds1722	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1726	rna1726-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:1347779..1348796-
coding sequence from alignment at CM002457.1:1347779..1348796-

mRNA sequence

>rna1726 ID=rna1726|Name=rna1726|organism=Nannochloropsis gaditana|type=mRNA|length=1177bp
AACAGCAACTCACGAACGTACGAACTCGGTTTAACTGGTGCAGGCACTTC
TACATGTCATTGGAAGGCAAAAATTAAATCATTTGAGCCATGTTCAGCGG
CAGAGGCCGGAACGGGAGTCGAATACCGCCGCAGCGACCTCCTCAACATT
CCTCGGATGATATCGAGGCAAACGACTCAGGAAAAGAATATGAAGAAGAT
CCGGTGAACATCATTCCCTTTTCCTCTGCATACAATCGGAGCGAGGACGA
CGAATGCCGGAATCGCCCCCAAGCTGCGCCCTCCTCCAACACCCGCGGGG
CGCCCCCAACAGCCTCTGCGCCCGCGCATCAGGGCAACTTGGTCGACGCC
TCTCATGCGGCAACTGCGGCAGGACCCCCACCAAGAAGCCGGCATGACGC
AGTACAGGACGATGAGCGCCCTGCCTCGGCCTTCAGTCCCCAAGCGCGGC
TCGAAGAAGAGGAAGGCAAAGCTGGGCCTACCGCGTGGCCCGATCCCCTC
CCTCCCCCCGCCCCTCCCCCGCCGGTCCCTCGCGCTCTCTTTCCTCTGCC
TCCTCCTTGTCAAACCACCGACCTACGACGATAGGCTCCCATCGGGACGC
GACCCGGGAATGGCACCACCCTCTCCCCTACCACCATCCCGGCCACCTAC
CCCCACCTCATCCGTCCCGCCCTCCGCATCTCCGAATCGGGGAAACGTCT
GCCGTTCCTCACGCTTCTCACTCCCGCGCACACGCACACTCATCCCCAAC
CATGGTGGCGCCCGTCCCGTCGCGCGCCTGCCCTGCCGCTGACGCGCACT
TGCATCCCTACAGCCATTCCGCCTCGACCCATCATCACCGACCCAGCCCT
GGTCGTTCCCTCTCCTCCTCCTCCTCCTCCTCCTCCCTCCACGCCGGCCA
CCGCCCTCCGTCCTCCTCGCACGCCAGCACGCCTACCTACCCCCACCGCC
ACTTCACCCCCTCCCCGACCCCGGACACGATCGGCGGCAGCTGCACCGCC
CACCTCCATCCTCCTCACTCTTCTCATTCGGCCTACCACTCCCATCCTAC
CGCCCCTCCCTCCGTCCTCAACCCCGGCTCCTACCGTCTTTCCACCCCCT
CCTCGCCCATCCCTCCTTCCATCACGCCCTCGCACTTTTCTCCTCCTCAG
CCGCCCTCCCGAAGGCAAGGGGAGGCA

protein sequence of rna1726

>rna1726-protein ID=rna1726-protein|Name=rna1726|organism=Nannochloropsis gaditana|type=polypeptide|length=241bp
MSSSASPQPGSSVLQMSFRNYESCAEGSGGMDVGGGGLSQQKLEEQELDR
CTPLLDAVESALDPDSTNEEERHAGKFNLPLGSTARPANASRLHLDASTA
SLAQPVPTPTGRRSRLLPSAHSSSSSLCSSNPASRQGSRLVVRHARRRGQ
AKGSRWNVVRVGKGEKLPESVGSLLTDSFNTLLMAPTAYTLAFLASAYLF
LVVLFAGIYLLLALEEECNMDIDSFLKGYLFSLETMVGREG

mRNA from alignment at CM002457.1:1347779..1348796-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1726 ID=rna1726|Name=rna1726|organism=Nannochloropsis gaditana|type=mRNA|length=1018bp|location=Sequence derived from alignment at CM002457.1:1347779..1348796- (Nannochloropsis gaditana)
AATAGAACCGTCTTGGTGGCTTTTTGTGGGACTGGGATGAGTTTGACGTA
CCATCCTTTCAGCGAGGTGAAGGAGGAGAGTGTTTGTCTCCGTATCGCGG
GAGATCTTGGGCGCGGGATTTGGAGCCCAAGGAAGTAATCTACGGCTCCG
GGGCCAATATCATCACCGGCAACGTGGCATTTCAATACAATCATATCACT
GGCACCGTACAGACCAATTCCTCCTCCAGCGGCGGCAGTGAAGGCGAGCG
AGATCGAGCCCCTGTGTCCAACCAAAACCCCGAAGAGGACCCTCCCATGT
CGTCGTCCGCCTCCCCTCAGCCCGGCAGCAGCGTGCTGCAAATGTCCTTC
CGTAACTACGAGAGCTGTGCTGAAGGTAGCGGTGGCATGGACGTGGGGGG
AGGAGGATTGTCTCAGCAGAAGCTGGAAGAGCAGGAGCTAGACCGCTGCA
CCCCGCTGTTAGATGCAGTTGAAAGTGCCCTCGACCCGGATAGCACCAAC
GAAGAGGAGAGGCATGCGGGCAAGTTCAACCTTCCCCTCGGCTCCACAGC
CCGTCCTGCGAACGCTTCTCGCCTTCACCTGGATGCGTCCACCGCATCTC
TTGCCCAGCCCGTCCCGACCCCCACTGGGCGTCGCTCCCGTTTACTTCCC
TCGGCACACTCCTCCTCTTCCTCCCTGTGCTCCTCCAACCCCGCCTCCAG
ACAAGGCAGCCGGCTGGTGGTCCGGCACGCAAGGAGACGGGGCCAAGCGA
AAGGGAGTCGTTGGAACGTGGTCCGCGTGGGAAAGGGAGAGAAGCTGCCG
GAGAGCGTCGGGAGCCTGCTCACGGATTCATTCAACACCTTGCTCATGGC
GCCCACCGCCTACACCTTGGCCTTCCTCGCGAGCGCCTACCTCTTCCTTG
TCGTCCTCTTCGCGGGGATCTACCTGCTCCTGGCGCTGGAGGAGGAATGC
AACATGGACATCGACTCCTTCTTGAAGGGGTACTTGTTCAGTCTGGAGAC
CATGGTGGGGAGGGAGGG

Coding sequence (CDS) from alignment at CM002457.1:1347779..1348796-

>rna1726 ID=rna1726|Name=rna1726|organism=Nannochloropsis gaditana|type=CDS|length=722bp|location=Sequence derived from alignment at CM002457.1:1347779..1348796- (Nannochloropsis gaditana)
ATGTCGTCGTCCGCCTCCCCTCAGCCCGGCAGCAGCGTGCTGCAAATGTC
CTTCCGTAACTACGAGAGCTGTGCTGAAGGTAGCGGTGGCATGGACGTGG
GGGGAGGAGGATTGTCTCAGCAGAAGCTGGAAGAGCAGGAGCTAGACCGC
TGCACCCCGCTGTTAGATGCAGTTGAAAGTGCCCTCGACCCGGATAGCAC
CAACGAAGAGGAGAGGCATGCGGGCAAGTTCAACCTTCCCCTCGGCTCCA
CAGCCCGTCCTGCGAACGCTTCTCGCCTTCACCTGGATGCGTCCACCGCA
TCTCTTGCCCAGCCCGTCCCGACCCCCACTGGGCGTCGCTCCCGTTTACT
TCCCTCGGCACACTCCTCCTCTTCCTCCCTGTGCTCCTCCAACCCCGCCT
CCAGACAAGGCAGCCGGCTGGTGGTCCGGCACGCAAGGAGACGGGGCCAA
GCGAAAGGGAGTCGTTGGAACGTGGTCCGCGTGGGAAAGGGAGAGAAGCT
GCCGGAGAGCGTCGGGAGCCTGCTCACGGATTCATTCAACACCTTGCTCA
TGGCGCCCACCGCCTACACCTTGGCCTTCCTCGCGAGCGCCTACCTCTTC
CTTGTCGTCCTCTTCGCGGGGATCTACCTGCTCCTGGCGCTGGAGGAGGA
ATGCAACATGGACATCGACTCCTTCTTGAAGGGGTACTTGTTCAGTCTGG
AGACCATGGTGGGGAGGGAGGG

Synonyms

Publications