rna172, rna172 (mRNA) Nannochloropsis gaditana

Overview
Namerna172
Unique Namerna172
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1139
Alignment locationCM002455.1:452451..454497 -

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Properties
Property NameValue
Productamp-binding enzyme
Orig transcript idgnl|cribi|Naga_100013g47.9818.mrna
Orig protein idgnl|cribi|Naga_100013g47.9818
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:452451..454497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100013g47gene164Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30530.1cds172Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna172rna172-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna172 ID=rna172|Name=rna172|organism=Nannochloropsis gaditana|type=mRNA|length=1139bp
ATCAATTCTTCACGCCCAACAAACCTCCGCGACCGAATGAGGACGAGTCT
ATAAATGAGAAAAATGTCACATTATTCGCTTGTGTCTCGTGCGATACCCG
TTTCGATCAGCTCACGTATTTGCGCATCACCCCTCTCCTACACCTCAAGC
CCAGGCTTCTCGTTGCAGCATCAAAGGACGCAGCGGCCTCAATATCTTCC
AATGCTTCATTCAACGACGACATCGCTCTTTCTCGTACTAGGGGCAATGT
TGTGTGCAGTTACCAAAAGTTTCATCCCTGTGCCGGCACGCGCGTCCCGC
TCTGTAACTTACTTCCCTGCAAAGCCCACCGCCATCTCCCTCGTGGGCTC
TACAATGAGACTGACGCCCTACATGTTCATGAGCACGAGCAATTTCGACG
AGCCTCTCATTCTTACTGAGGAGAATGCAGCTTTGGTTCTGGAGGCCGCT
CGGCAAGAGCTTGGTACCATGTTTGGGTACACCAAGGAGAACCAAGCTGT
GGGCATTACTGGGGAGGTTGACCTGGTGGCCGTTGAGGGCATCAGCATCA
TCGTCCGTCTCAAGAACAGGTTTTGGCACGATCGAAAGATGGTGCTAACC
CGTATCTCTAAGTTTATAACGGACCGTATTCCCGAAGCTATGGTGGAAAT
CGAGGATGTGGAACAATTGAAGGGGGATGACGCGAAGAGCGTCTCGGATT
TTTACGCGCATTAAGGCACCAGAACGGAATTAGAGAGCAATTTTGACGAT
AACTTGCAAGCTTGTGCTTGTGTTGGTAGCTTTTTTCATCTATTTACCAG
AATCCTTATCCTGTGCGAGCGTGGCTTTCCAATCCGCCTCCAGAACTCGC
CAATTTACGTCGCCCTTGAAATTGCGCGGTACCGCACCCCACCGCATCCG
AGACGGTTGTGCACCTTTGGACACGCATCCCTTAGCATCCCTCACAAAAT
TCTTCTCGACCTCCAGCCTCTTATCCTTGCTTACACCCCTCCCGTCATTG
CCTTCCCCATGATCCTCCGCGGACTGTATCTCAATCGTCACCAGGCAGTC
ATCCTCATGCTCGCTCCCCACCCGCAACCCGACGGCCGCCAGCGCAAAAC
TACCCGGAAGCAAACCGTACCTCTCCTCCGTAAAGAGCG
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protein sequence of rna172

>rna172-protein ID=rna172-protein|Name=rna172|organism=Nannochloropsis gaditana|type=polypeptide|length=649bp
MPLSSALLDYLPAFGPPHEDELFLTFYPVSSSSSASCHTPAFKTTWSRRE
LWELSRRFAYVLTKQAKLKKGDCQVHLFAGNSAEDVALRLASVMTGTVPV
TVNWDSDPLDRVVFKVQSSRAKVVLIHAKTPLEQVAEVRSKIPGVAVMAV
EDMLEHGRGEEGQQAADVASDEDLFESDLGKDDTRIIIYTSGSSGEPKGV
RLSYGNYVRNRETFEAFLLLQDPASRFTPFLANPLHHTNSTAFTDWALRR
PGTHLHLFERYTTSYWPALARLALGLPRSAPLPSTPSVAQPLVTAQQASK
LHLVCPTVSRHFDFLESLIEEKKLADVPNPDVLKWVSPVVTFLLGSAPVG
PATVQRLLKYVGHLPVVRFGSTETCLQVMGTPTDVSEEERLHAFQRGWAV
GEQPGEEPGFYVGRPHPPYTEVMVVEGIDPAAPASYLQECREGQKGFIVT
RGNLMTGYVQGEAATKQAIHTEAGGWYTNLGDVGFWLWDGERREGGSGAG
GGRKKDFYWVTRTSNLLIRGGTNYSYEQITRELTLFTEERYGLLPGSFAL
AAVGLRVGSEHEDDCLVTIEIQSAEDHGEGNDGRGVSKDKRLEVEKNFVR
DAKGCVSKGAQPSRMRWGAVPRNFKGDVNWRVLEADWKATLAQDKDSGK
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mRNA from alignment at CM002455.1:452451..454497-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna172 ID=rna172|Name=rna172|organism=Nannochloropsis gaditana|type=mRNA|length=2047bp|location=Sequence derived from alignment at CM002455.1:452451..454497- (Nannochloropsis gaditana)
AAATGCGACGCCGTTGATTGAAGAATACTTACCCCTGCCCCCTATACCAC
AGGTCAAATTATGCCGCTTTCGTCAGCCTTGCTTGACTACCTACCGGCGT
TCGGGCCACCGCACGAAGACGAGCTTTTTTTGACGTTTTATCCCGTCTCA
TCTTCCTCCTCCGCCTCCTGCCACACCCCCGCCTTCAAAACGACCTGGTC
CCGGCGGGAGCTATGGGAACTGAGTCGCCGCTTTGCCTACGTCCTGACTA
AGCAGGCAAAGCTTAAGAAAGGGGACTGCCAAGTGCACTTATTTGCTGGA
AACAGCGCGGAAGATGTTGCTTTACGTCTGGCGTCCGTGATGACGGGGAC
TGTTCCCGTAACAGTGAACTGGGACTCTGACCCTCTCGACCGCGTCGTCT
TCAAAGTGCAGAGCAGTCGCGCGAAAGTTGTGTTGATACATGCCAAAACA
CCTCTAGAGCAGGTAGCGGAAGTGCGGTCGAAGATACCGGGGGTAGCCGT
GATGGCTGTGGAAGACATGCTTGAGCACGGCAGAGGCGAAGAGGGGCAGC
AGGCAGCAGACGTTGCGTCCGACGAGGATTTGTTTGAGTCAGACCTTGGC
AAGGATGACACCCGTATTATTATTTATACTTCGGGGAGCTCGGGTGAGCC
CAAGGGCGTCCGCCTTTCCTATGGGAACTACGTGAGGAACCGGGAGACGT
TCGAGGCCTTCCTCCTCCTTCAAGACCCCGCATCTCGCTTCACGCCCTTT
TTGGCCAACCCCTTGCATCACACCAACTCAACCGCTTTCACGGACTGGGC
CTTGCGTCGCCCCGGCACCCATCTGCACCTCTTCGAACGCTACACGACGT
CCTACTGGCCCGCCCTCGCACGTCTCGCCCTAGGTCTCCCACGCTCCGCG
CCCCTCCCTTCCACGCCCTCCGTGGCTCAGCCCCTGGTCACAGCCCAACA
AGCCAGCAAGCTTCACCTTGTGTGTCCCACGGTCAGCCGGCATTTCGATT
TCTTGGAGAGCCTGATCGAGGAGAAGAAGCTTGCCGACGTCCCCAACCCG
GACGTCCTCAAGTGGGTTTCCCCGGTCGTCACCTTCCTGCTGGGCTCGGC
ACCGGTGGGGCCCGCAACGGTGCAGCGTCTCCTCAAATACGTGGGCCACT
TGCCTGTCGTGCGCTTCGGGTCGACCGAGACGTGCCTGCAGGTGATGGGT
ACGCCCACGGACGTGAGCGAAGAGGAGCGGTTGCACGCCTTCCAAAGGGG
CTGGGCGGTGGGGGAGCAGCCGGGCGAGGAACCTGGTTTCTACGTGGGCC
GACCGCACCCACCTTACACAGAAGTAATGGTGGTGGAAGGCATCGACCCC
GCGGCGCCAGCGTCCTACTTGCAGGAGTGCAGAGAAGGCCAAAAGGGGTT
TATTGTGACTCGGGGAAATTTGATGACGGGCTACGTACAAGGGGAGGCGG
CGACGAAGCAGGCGATCCACACGGAGGCGGGCGGCTGGTACACAAACCTT
GGAGACGTGGGCTTCTGGTTGTGGGACGGAGAGAGGAGGGAAGGAGGGAG
CGGGGCAGGAGGCGGGAGGAAGAAGGACTTCTACTGGGTGACACGCACGT
CCAACCTCTTGATCCGAGGTGGCACCAACTACTCGTACGAGCAGATCACG
CGGGAGCTTACGCTCTTTACGGAGGAGAGGTACGGTTTGCTTCCGGGTAG
TTTTGCGCTGGCGGCCGTCGGGTTGCGGGTGGGGAGCGAGCATGAGGATG
ACTGCCTGGTGACGATTGAGATACAGTCCGCGGAGGATCATGGGGAAGGC
AATGACGGGAGGGGTGTAAGCAAGGATAAGAGGCTGGAGGTCGAGAAGAA
TTTTGTGAGGGATGCTAAGGGATGCGTGTCCAAAGGTGCACAACCGTCTC
GGATGCGGTGGGGTGCGGTACCGCGCAATTTCAAGGGCGACGTAAATTGG
CGAGTTCTGGAGGCGGATTGGAAAGCCACGCTCGCACAGGATAAGGATTC
TGGTAAATAGATGAAAAAAGCTACCAACACAAGCACAAGCTTGCAAG
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Coding sequence (CDS) from alignment at CM002455.1:452451..454497-

>rna172 ID=rna172|Name=rna172|organism=Nannochloropsis gaditana|type=CDS|length=1950bp|location=Sequence derived from alignment at CM002455.1:452451..454497- (Nannochloropsis gaditana)
ATGCCGCTTTCGTCAGCCTTGCTTGACTACCTACCGGCGTTCGGGCCACC
GCACGAAGACGAGCTTTTTTTGACGTTTTATCCCGTCTCATCTTCCTCCT
CCGCCTCCTGCCACACCCCCGCCTTCAAAACGACCTGGTCCCGGCGGGAG
CTATGGGAACTGAGTCGCCGCTTTGCCTACGTCCTGACTAAGCAGGCAAA
GCTTAAGAAAGGGGACTGCCAAGTGCACTTATTTGCTGGAAACAGCGCGG
AAGATGTTGCTTTACGTCTGGCGTCCGTGATGACGGGGACTGTTCCCGTA
ACAGTGAACTGGGACTCTGACCCTCTCGACCGCGTCGTCTTCAAAGTGCA
GAGCAGTCGCGCGAAAGTTGTGTTGATACATGCCAAAACACCTCTAGAGC
AGGTAGCGGAAGTGCGGTCGAAGATACCGGGGGTAGCCGTGATGGCTGTG
GAAGACATGCTTGAGCACGGCAGAGGCGAAGAGGGGCAGCAGGCAGCAGA
CGTTGCGTCCGACGAGGATTTGTTTGAGTCAGACCTTGGCAAGGATGACA
CCCGTATTATTATTTATACTTCGGGGAGCTCGGGTGAGCCCAAGGGCGTC
CGCCTTTCCTATGGGAACTACGTGAGGAACCGGGAGACGTTCGAGGCCTT
CCTCCTCCTTCAAGACCCCGCATCTCGCTTCACGCCCTTTTTGGCCAACC
CCTTGCATCACACCAACTCAACCGCTTTCACGGACTGGGCCTTGCGTCGC
CCCGGCACCCATCTGCACCTCTTCGAACGCTACACGACGTCCTACTGGCC
CGCCCTCGCACGTCTCGCCCTAGGTCTCCCACGCTCCGCGCCCCTCCCTT
CCACGCCCTCCGTGGCTCAGCCCCTGGTCACAGCCCAACAAGCCAGCAAG
CTTCACCTTGTGTGTCCCACGGTCAGCCGGCATTTCGATTTCTTGGAGAG
CCTGATCGAGGAGAAGAAGCTTGCCGACGTCCCCAACCCGGACGTCCTCA
AGTGGGTTTCCCCGGTCGTCACCTTCCTGCTGGGCTCGGCACCGGTGGGG
CCCGCAACGGTGCAGCGTCTCCTCAAATACGTGGGCCACTTGCCTGTCGT
GCGCTTCGGGTCGACCGAGACGTGCCTGCAGGTGATGGGTACGCCCACGG
ACGTGAGCGAAGAGGAGCGGTTGCACGCCTTCCAAAGGGGCTGGGCGGTG
GGGGAGCAGCCGGGCGAGGAACCTGGTTTCTACGTGGGCCGACCGCACCC
ACCTTACACAGAAGTAATGGTGGTGGAAGGCATCGACCCCGCGGCGCCAG
CGTCCTACTTGCAGGAGTGCAGAGAAGGCCAAAAGGGGTTTATTGTGACT
CGGGGAAATTTGATGACGGGCTACGTACAAGGGGAGGCGGCGACGAAGCA
GGCGATCCACACGGAGGCGGGCGGCTGGTACACAAACCTTGGAGACGTGG
GCTTCTGGTTGTGGGACGGAGAGAGGAGGGAAGGAGGGAGCGGGGCAGGA
GGCGGGAGGAAGAAGGACTTCTACTGGGTGACACGCACGTCCAACCTCTT
GATCCGAGGTGGCACCAACTACTCGTACGAGCAGATCACGCGGGAGCTTA
CGCTCTTTACGGAGGAGAGGTACGGTTTGCTTCCGGGTAGTTTTGCGCTG
GCGGCCGTCGGGTTGCGGGTGGGGAGCGAGCATGAGGATGACTGCCTGGT
GACGATTGAGATACAGTCCGCGGAGGATCATGGGGAAGGCAATGACGGGA
GGGGTGTAAGCAAGGATAAGAGGCTGGAGGTCGAGAAGAATTTTGTGAGG
GATGCTAAGGGATGCGTGTCCAAAGGTGCACAACCGTCTCGGATGCGGTG
GGGTGCGGTACCGCGCAATTTCAAGGGCGACGTAAATTGGCGAGTTCTGG
AGGCGGATTGGAAAGCCACGCTCGCACAGGATAAGGATTCTGGTAAATAG
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Synonyms
Publications