rna1713, rna1713 (mRNA) Nannochloropsis gaditana

Overview
Namerna1713
Unique Namerna1713
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length718
Alignment locationCM002457.1:1306912..1307788 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102110g1.3799.mrna
Orig protein idgnl|cribi|Naga_102110g1.3799
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1306912..1307788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102110g1gene1647Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1713rna1713-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28964.1cds1709Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1713 ID=rna1713|Name=rna1713|organism=Nannochloropsis gaditana|type=mRNA|length=718bp
CAATGAACGCACCTTCACCTTCACCTTTCATACCCTCACTTCGCAGGCGT
GGAGGCGATTGGCGTTGCACTGGCCTGGGGAGGAATTGTTGTTGCGCCCT
CATCTGTGGTTTTGGCGTCTTTTGTGCGTCCTTGAATCTCGGGAAACTGG
GAGAGAGAGATCTTTCCAATCTGGTTTTCCTTTTTTTTTCCGCAGCCGCA
TGTCCCCCCGATGTTGTCCACCATAAAAACCGACACAATCATCAGCAAGA
CCAGCAGAATAAGTTCTAGAGGCACGGAATCTTCGTCCATTTTCATCGTG
TCGTCCGCTTCTTCCTCGCTTCCCACCATGGCGGCTCCTGCCATCCCGCT
CCCCCCCTCTCACGTGCCAAATCAATCACATCCTCGCATTGCCGAAGTGG
AAGCAGACATCGTTGACAGGCTACTGGGGGAGCTTCTGGCAGTGAAGGAC
GCCAGGCCTGGTACCGAGGTGAACCTGGCGGAGGACGACATCTTCTGGCT
CTGCCGAAAATGCCGCGAGGTACGTGTCGGGAGGGAATGAGAAAGGTCCT
CACGATTTCGATTTGTGGGTCAGGAAGGGATGTGCACTCCAGGCTTTCCG
AGAAAATCCTCTTTTTTGGCGTTCTGGGGGATTGTTGTCGAGGGAGCAAG
GGGGTTTTCGGGATGAGGAAGATGCAGTAAGGCGCGAGGGTATGTGGAAG
GGAGGAAGCGCAAAGAGA
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protein sequence of rna1713

>rna1713-protein ID=rna1713-protein|Name=rna1713|organism=Nannochloropsis gaditana|type=polypeptide|length=108bp
MMCVNEDLVCSFRVLRPARHLVGRGGKGGGGVGGGGGGGGGRRGGRDRRV
LVSGAGRGGGRREGSHRHVIFLKEGGRKGRREGRRRSGGGSGSRAKLLCG
VDLEREGR
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mRNA from alignment at CM002457.1:1306912..1307788+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1713 ID=rna1713|Name=rna1713|organism=Nannochloropsis gaditana|type=mRNA|length=877bp|location=Sequence derived from alignment at CM002457.1:1306912..1307788+ (Nannochloropsis gaditana)
ttccttctttcctgtccGCACTTGTTGCCAAGCGAAGAGGTCGCGTCCGA
GGACTCACGCTCTAgttgccctctttccctccctcccttccgccctccct
acctccctcggTGAGCGCAGGTGGTGGAAGACGGTTATGAATTTCAAGCC
TCAAGACAGCTGGTCACACTTTTCTCAGCGGTAGGATCCATCATCTGATG
ATTACCCTCGGTTCTCCTCGCTACGATttcgtcctcatccccttcctccc
tcgcttcctccctccctctctccctccctcgcagcCGAATTACTGCGGGG
AGTTCGACAACGCGGGGGCCATGATGTGTGTAAATGAGGACTTGGTGTGC
TCTTTCAGGGTCCTGCGCCCGGCCCGACACCTagtggggcggggagggaa
ggggggagggggggttgggggaggaggaggaggaggaggaggaaggagag
gaggacgagatcgGAGGGTCCTTGTTTCGGGTGCCGGACGcggcggagga
cggagagaagGAAGTCACCGGCACGTCATCTTTCtaaaggaaggtgggag
gaagggaaggagggagggaaggaggcgttCCGGGGGCGGATCGGGGTCAC
GTGCAAAGCTTTTGTGCGGTGTTGATttagaaagagaaggaagatgaagg
atCCTCGGATAGGCTGGcacgggcagggaggggaaatgtggaaggggaag
gggagagagggggggaggtcgtgagggaggcagggcgagaattctgaagg
gaaggagagggggggtcCAGTCTCTGGGAGAGAATTGTAAGAAAAGCGTG
AGTGTCCCTGTTGTGAAACTGCCATTGTCCTATCTTGATCATACATCACA
AAATGTGGCTTTGACGATCTAGGTTCC
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Coding sequence (CDS) from alignment at CM002457.1:1306912..1307788+

>rna1713 ID=rna1713|Name=rna1713|organism=Nannochloropsis gaditana|type=CDS|length=327bp|location=Sequence derived from alignment at CM002457.1:1306912..1307788+ (Nannochloropsis gaditana)
ATGATGTGTGTAAATGAGGACTTGGTGTGCTCTTTCAGGGTCCTGCGCCC
GGCCCGACACCTagtggggcggggagggaaggggggagggggggttgggg
gaggaggaggaggaggaggaggaaggagaggaggacgagatcgGAGGGTC
CTTGTTTCGGGTGCCGGACGcggcggaggacggagagaagGAAGTCACCG
GCACGTCATCTTTCtaaaggaaggtgggaggaagggaaggagggagggaa
ggaggcgttCCGGGGGCGGATCGGGGTCACGTGCAAAGCTTTTGTGCGGT
GTTGATttagaaagagaaggaagatga
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Synonyms
Publications