rna1712, rna1712 (mRNA) Nannochloropsis gaditana

Overview
Namerna1712
Unique Namerna1712
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length887
Alignment locationCM002457.1:1305226..1305943 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101446g1.1024.mrna
Orig protein idgnl|cribi|Naga_101446g1.1024
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1305226..1305943 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101446g1gene1646Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1712rna1712-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28966.1cds1708Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1712 ID=rna1712|Name=rna1712|organism=Nannochloropsis gaditana|type=mRNA|length=887bp
CCTCAGACGCGGACGCAGTGTCGAGCTGGGCGAAGCAGCAGGCCCTCAAA
ATCCGGGTAGCTTTCTCTCAACAGAGGCCGACACGAGCGGATGTGGTGGC
TGTGGGGCAAGTGGTTGCTCGCACGACTGAGACGTGGGCGAGGGGCGCGA
TCAGGAGAGTCAGGTAAAGGCGTGAGGGAGGAAGGGAGGGAGGGGCGGGG
TATGGCAGGGCTGTTGCGGGGGTCGCAAGGCAAGGGAGGAAGAAACGCGA
GGAAGGGAGGGAGGAGAGAGAGAGGGAGGGAGGGAGGGAGGACAAGAGGA
CAAGGTGAAAAAATGCCACCCTGTGATGTTCTTGTCCGGCTGAATGCACA
TTTTACAACCGTTTGCAAGCAGCAAGGAAGTGCAGCAGCACTGGCGAAAG
CAGCGACAGCAGCAAGGGGAAGGGCGGGGGAGGAGGGAGGGTAAGGAGGC
GCAGCTCCAGGCAAGCGAAGACTGTGCCGGCGGCAAGGTTCTGCCTGGTT
TCCTTCCACGTTGGACCTCGCGGTCGATTATAAATATCTTTATCCATGTG
ACACGCCTGGTAAGGTCCTTGGAAGGGAGAAGAGATGAATGAGGTCCTGG
AAAAAGGGGTGGCGTCCGCATAGCAGGGTGAGGAGAAGAGAGGGAGGATT
GGGCCTGGAGTGACGTGATCTTTAAAATGTAAAAATGTGGTGAGGTATTG
CACGAAAAAGAAGCAACCATCAAATGGGCCGAAGAGATGCCCCCGAGTAA
ACGCCGAGCGAAAGATGGCTGAAGCGCAGTTTCAAACGCCCCATGATTTC
TTCCAGAAAAGGCAACCAAAAATTGTTGAACAGCTTGAAATTGTTGCCAG
GTTTGAAATCTTGAAAGGGACGGAAACGCGATGTTGG
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protein sequence of rna1712

>rna1712-protein ID=rna1712-protein|Name=rna1712|organism=Nannochloropsis gaditana|type=polypeptide|length=109bp
MLSTIKTDTIISKTSRISSRGTESSSIFIVSSASSSLPTMAAPAIPLPPS
HVPNQSHPRIAEVEADIVDRLLGELLAVKDARPGTEVNLAEDDIFWLCRK
CREVRVGRE
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mRNA from alignment at CM002457.1:1305226..1305943+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1712 ID=rna1712|Name=rna1712|organism=Nannochloropsis gaditana|type=mRNA|length=718bp|location=Sequence derived from alignment at CM002457.1:1305226..1305943+ (Nannochloropsis gaditana)
CAATGAACGCACCTTCACCTTCACCTTTCATACCCTCACTTCgcaggcgt
ggaggcgaTTGGCGTTGCACTGGCCTGGGGAGGAATTGTTGTTGCGCCCT
CATCTGTGGTTTTGGCGTCTTTTGTGCGTCCTTGAATCTCGGGAAACTGG
GAGAGAGAGATCTTTCCAATCTggttttcctttttttttccgcAGCCGCA
TGTCCCCCCGATGTTGTCCACCATAAAAACCGACACAATCATCAGCAAGA
CCAGCAGAATAAGTTCTAGAGGCACGGAATCTTCGTCCATTTTCATCGTG
tcgtccgcttcttcctcgcttcccacCATGGCGGCTCCTGCCatcccgct
ccccccctctcacgTGCCAAATCAATCACATCCTCGCATTGCCGAAGTGG
AAGCAGACATCGTTGACAGGCTACTGGGGGAGCTTCTGGCAGTGAAGGAC
GCCAGGCCTGGTACCGAGGTGAacctggcggaggacgacatCTTCTGGCT
CTGCCGAAAATGCCGCGAGGTACGTGTcgggagggaatgagaaAGGTCCT
CACGATTTCGATTTGTGGGTCAGGAAGGGATGTGCACTCCAGGCTTTCCG
AGAAAATCCTCTTTTTTGGCGTTCTGGGGGATTGTTGTcgagggagcaag
ggggtTTTCGGGATGAGGAAGATGCAGTAAGGCGCGAGGGTatgtggaag
ggaggaagcgcaaAGAGA
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Coding sequence (CDS) from alignment at CM002457.1:1305226..1305943+

>rna1712 ID=rna1712|Name=rna1712|organism=Nannochloropsis gaditana|type=CDS|length=330bp|location=Sequence derived from alignment at CM002457.1:1305226..1305943+ (Nannochloropsis gaditana)
ATGTTGTCCACCATAAAAACCGACACAATCATCAGCAAGACCAGCAGAAT
AAGTTCTAGAGGCACGGAATCTTCGTCCATTTTCATCGTGtcgtccgctt
cttcctcgcttcccacCATGGCGGCTCCTGCCatcccgctccccccctct
cacgTGCCAAATCAATCACATCCTCGCATTGCCGAAGTGGAAGCAGACAT
CGTTGACAGGCTACTGGGGGAGCTTCTGGCAGTGAAGGACGCCAGGCCTG
GTACCGAGGTGAacctggcggaggacgacatCTTCTGGCTCTGCCGAAAA
TGCCGCGAGGTACGTGTcgggagggaatga
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Synonyms
Publications