rna1711, rna1711 (mRNA) Nannochloropsis gaditana

Overview
Namerna1711
Unique Namerna1711
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1408
Alignment locationCM002457.1:1303512..1304398 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101446g2.1023.mrna
Orig protein idgnl|cribi|Naga_101446g2.1023
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1303512..1304398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101446g2gene1645Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1711rna1711-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28965.1cds1707Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1711 ID=rna1711|Name=rna1711|organism=Nannochloropsis gaditana|type=mRNA|length=1408bp
GCCAATAATATGTAGATGTGCGGGGGGGAAAACCATGCACAATCCAGACT
TTCAAGACATCATTGAATGAGATTTATTCTTTTTGGACGGAAGGCTTGTA
ACAATTGCTCAAGAGGCTCAAGCAGTGGATATCACAAGCCATGAGGACCA
GAGTGTTCTTTGACATTTCCCCTCCTTCCGCACGATTTTACTACAGAACT
TATGCGCTCATTGTCAAGGTAAGGGTCGCTAAGGTAATGAATGATCCTTC
TCTGTCTGCAGTGGACGCAGGCTTCGAGTTAAAGCAGCGAGTCGAGAGGG
CTGGCACAAGCGAGGAGGGAAGGGGATGGTCGGGCCTTGTGGAAAGCCAC
CGGGGGAGAAGCAGGGAAGAGGTTCAGACGCAAGGAATGGCCGGAGGGAT
GGAGGGAATGGAGGGGAGGGAGGAGGGAGAGGAGGATACGGTGGTCATTG
ACGACGACCAGCGTCCTCTTTCCATCCAGCGCTCGTCCTTGCTGCCAGGC
GAACCATCCTCATTAACGCAGAATCCCCTCTGGCCTGGGCCGGATGAAGG
CACCACGGACCATGAAGGGGTCCCATGGGGTGGAGAAGAGGAAATCAAGA
CAGAAGGGGAGGAGGAAGCGACGTGGGATATGCTGGATGACCTCCCTGAA
ATTCCTCATTTATGCTCCATCCATGCGTCCCAAAGCCATGCATTACCTGC
CACGGCACCGACCGAGCCCTTGTCTCCGCCCCACCAAGCCCCCTCTACTC
ACTCCTCTTCCTCCGGTGGATGGTACGATGTGGTCAAGGAGGTTCAGGAC
CTTCCGCCCCCTCCTTCCGGCCCCATCACCACCATGTTCTGCTGGATGTA
CCTGGACGAATGGGGCAACGAATTTGAATATGGGCCACAAGCCCAGCTTC
TTTTGGAACGGGAATGGCGGTGCGGGAAAGCCCATGCGCTTCTCCTCGTT
CCTCCGCCTGCTCCTCCTTGTCCTTCTCCTCCCGGAGAGTCTCCCCTCCA
CCGTCATACCCACCGCCCGCACGGCGCCCCCCCCACCGATGAAGGCCCTC
CGCGCTCCTACGTGGTGCATTTTGCCAGCCCGCAAGCCAACGGAGTGGAA
GAGCATGTGCAAAGCAACCGGTTCACAGGCACCCAACGAAGGGTCCGTCG
GATGACGCGGGGTCCTAAACCATCACATGGACTAGGGGCGGTGGTGCGTC
GATGGAAAGGCCGGTGGCGGCGAGGGCAGGAGACGCTGGCGACATTGGGT
GAGGCAAAGAGGGGAAAGCGCGCAAGGGAGGGTGGTGAGGCAGAGATGGG
AGAGCGAGCGAGGGAGGGCAGAGGGGAAGAGGGAGGGTTGGAGGGAGACA
GAGGACCCTGGTACAGCCTGCTTGCCTCCCAACTATGTCCCTCCCTCCCT
TCCTCCCT
back to top

protein sequence of rna1711

>rna1711-protein ID=rna1711-protein|Name=rna1711|organism=Nannochloropsis gaditana|type=polypeptide|length=117bp
MWWLWGKWLLARLRRGRGARSGESGKGVREEGREGRGMAGLLRGSQGKGG
RNARKGGRRERGREGGRTRGQGEKMPPCDVLVRLNAHFTTVCKQQGSAAA
LAKAATAARGRAGEEGG
back to top

mRNA from alignment at CM002457.1:1303512..1304398+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1711 ID=rna1711|Name=rna1711|organism=Nannochloropsis gaditana|type=mRNA|length=887bp|location=Sequence derived from alignment at CM002457.1:1303512..1304398+ (Nannochloropsis gaditana)
CCTCAGACGCGGACGCAGTGTCGAGCTGGGCGAAGCAGCAGGCCCTCAaa
atccgggtagctttctCTCAACAGAGGCCGACACGAGCGGATGTGGTGGC
TGTGGGGCAAGTGGTTGCTCGCACGACTGAGacgtgggcgaggggcgcgA
TCAGGAGAGTCAGGTAaaggcgtgagggaggaagggagggaggggcgggg
taTGGCAGGGCTGTTGCGGGGGTCGcaaggcaagggaggaagaaacgcga
ggaagggagggaggagagagagagggagggagggagggaggacaagagga
cAAGGTGAAAAAATGCCACCCTGTGATGTTCTTGTCCGGCTGAATGCACA
TTTTACAACCGTTTGCAAGCAGCAAGGAAGTGCAGCAGCACTGGCGAaag
cagcgacagcagcaaggggaagggcgggggaggagggagggtaaggaGGC
GCAGCTCCAGGCAAGCGAAGACTGTGCCGGCGGCAAGGTTCTGCCTGGTT
TCCTTCCACGTTGGACCTCGCGGTCGATTATAAATATCTTTATCCATGTG
ACACGCCTGGTAAGGTCcttggaagggagaagagatgAATGAGGTCCTGG
AAAAAGGGGTGGCGTCCGCATAGCAGGgtgaggagaagagagggaggatt
ggGCCTGGAGTGACGTGATCTTTAAAATGTAAAAATGTGGTGAGGTATTG
cacgaaaaagaagcaaCCATCAAATGGGCCGAAGAGATGCCCCCGAGTAA
ACGCCGAGCGAAAGATGGCTGAAGCGCAGTTTCAAACGCCCCATGATTTC
TTCCAGAAAAGGCAACCAAAAATTGTTGAACAGCTTGAAATTGTTGCCAG
GTTTGAAATCTTGAAAGGGACGGAAACGCGATGTTGG
back to top

Coding sequence (CDS) from alignment at CM002457.1:1303512..1304398+

>rna1711 ID=rna1711|Name=rna1711|organism=Nannochloropsis gaditana|type=CDS|length=354bp|location=Sequence derived from alignment at CM002457.1:1303512..1304398+ (Nannochloropsis gaditana)
ATGTGGTGGCTGTGGGGCAAGTGGTTGCTCGCACGACTGAGacgtgggcg
aggggcgcgATCAGGAGAGTCAGGTAaaggcgtgagggaggaagggaggg
aggggcggggtaTGGCAGGGCTGTTGCGGGGGTCGcaaggcaagggagga
agaaacgcgaggaagggagggaggagagagagagggagggagggagggag
gacaagaggacAAGGTGAAAAAATGCCACCCTGTGATGTTCTTGTCCGGC
TGAATGCACATTTTACAACCGTTTGCAAGCAGCAAGGAAGTGCAGCAGCA
CTGGCGAaagcagcgacagcagcaaggggaagggcgggggaggagggagg
gtaa
back to top
Synonyms
Publications