rna1705, rna1705 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1705
Unique Name	rna1705
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2352
Alignment location	CM002457.1:1292264..1294615 +

Link to JBrowse

Properties


Property Name	Value
Product	4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis
Orig transcript id	gnl\|cribi\|Naga_100773g3.7444.mrna
Orig protein id	gnl\|cribi\|Naga_100773g3.7444
Gene	thiJ
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:1292264..1294615 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
thiJ	gene1640	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1705	rna1705-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28974.1	cds1701	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:1292264..1294615+
coding sequence from alignment at CM002457.1:1292264..1294615+

mRNA sequence

>rna1705 ID=rna1705|Name=rna1705|organism=Nannochloropsis gaditana|type=mRNA|length=2352bp
GCTGCTGTCAGCAAGCGAGGCAAGTTTGCCATCCACGAGACGATGCTGGG
TGTCCCATGCGTCCTGGTACGGAGTGAGACGATCTGACCAGTCGTGAAGC
AGGACAGGGTCCCGTGCATGGGAGGGAAGGGGGCTGAATGAAAGGGCATC
GGAGAGACGAGTGGACGGAGGAGGAGGTATGGTTGGGAAGGCATTGATGA
AAAGAATCTGGGAAAACAGGATCAATAACCAACAGGAATGAGCAGGTAGA
CGTGATGATAACCATAAAATATTTTTCGAATGCGTGCCTGTCCGTTGGCG
TATCATGCCCTCCTGTTATCGTGAAAAAGAGGAATATGGTGTCAGGAGAT
TACATTAGCATGAGCAATAAAACTTGTGAAATAGATAATACTTGATTTGA
TTGGCCTGGAGAGTATCTGTGATATTCAAGCCCGGCAATAATGTTTGGAA
AATAGTGAAAAATAGGGCTGGGCGGAGCGTACTTTGACACCCACAGATAT
CATTTTGGCCTGCGCTGACAGGGGATAGGAATAAAAGTAGCATGACACAT
TAGCTTGACTTAATGGGAGGTTCGCGCTCGACACCTATATTTTTTCTATC
TAAATTTCGAGGACTTAATTGAGCGGGCGAGGTTGTACAGCAGGAGATAA
GCACAGGAGGCAAGAGGCGTGCTCAAGTGAAAGACTGTGGACGGGACATA
TTTCCTCTTGCTCCCTCACTTCCATCACCCCCGCCGGCAAATTCGGTCAT
ATAATTGCGCTCACACATATACCTCGAAACCCATCTATCACACGTCCGTC
GCAGCAGCCGCGTGAATAGCCCCTTTGCGGAGCGTGGTATGGAAAGCGGT
AAGCAGTCTCGTGCCTGAATCCTTGTGAACCTCCCCCCTCCCTTCCAGAA
GCACAATGCTGTGAGCAATTCTGACTTTGCGTTACCCTCCGCGCTTGCAT
GCACGTGATATGATACGGCGCTCTTGCACTGTCTTTCACACGGTGGAGCA
TGTGCCTGAGTCGCTCACTATTTCCCTGTTATTTCTTTCCTGCCCGCTCA
TCCAGCTTCCCTCTTCGTTTTTCCAAAACCCACATGATGACGCTGTCCCG
GCTCTATTTTTCCACCACGGCCATCGCCATACTTTGCATGTACTCCATTA
TCCTCCCCACCTCCTCCGCTTTCCTTCTCCGCGCCCGTCCTTTTCCTTCC
CCCGCCGCGACCTCCACCTGGTCCCGGTGCTTTTTGTCATCCTCCTCCAC
GCCGGCAGCGCCCAAGAAAGTGCTCGTGCCGGTGGCCGACGGCTCGGAAG
AAATTGAGTCGGTGACGATCATCGACGTCCTTGTCCGGGCCGGGGCCGCC
GTGACCGTGGCCTCTGTCATGCCCTCCGCCTCGACTGCCACTTTGCCCAG
CTCGTGGCAGGTGACGTGCTCTCGTGGCGTGAAGCTCGTGGCGGACAAGG
GCATCGACGACTGCCTGGGGGAGGAATGGGATTTGATCGCCTGCCCAGGC
GGACTGCCGGGGGCGGAACATTTGCGGGATTCCCCCGCCCTTTTGACGCT
GTTGCAACGTCAAGATAAAGCCCAACGCCTTGTGGCTGCCATCTGCGCCT
CGCCCGCGGTGGTTTTACACACCCATGGCTTCTTGACAGGGAAACGCGCC
ACGTGTTTCCCGGCGGAACGCTTCGTGTCGAGCCTGGCTCGCTACGAGGA
CGGGGAGGAGGGCGTGGTGGAGGACGGGCATGTGGTCACGAGCCGTGGCC
CGGGGACGACGCTTCGCTTCGCCTTGACCTTAGTCGATCGCTTGTGCGGA
CGGGCGAAGGCAGAGGAGGTGGCGAAAGGCTTGTTGGTAGACTATCCGGG
AAAGGGGAACTAGGGCAAGGGGGCGAATGGGGGAGATGGACGGGATGTTT
CGGGGCACAGGAGAGGGAGAGGGGTGAGGCGAAGAGAGAGAGGTAGTGGT
GCGGTTCAGGAGGTAGGAAGGGTGGGGCTTCCACACGCATTCAGAAGGGA
AACCGTGGGTGTCGGAAGGAAAAGGTTTAAGGGGGTGGACGGTGAGAGGC
TGGCATGCCCAGGTCGACAAGGAGGGGCAGGGGGGGAGGGGTGGGGGTAA
GGAGGAAAAGGCACCGTGAGGTCCGTCGAGGGAGTGCACCCAAGCCAGCC
GGAACGTCCCCTGTGAGAGCAAAAAGAGATCAAGGGGCAGAGGGAAAGGA
GCCGGACGTGGGACCAAGGAGGGGAAGCAGGAGGGTCAGGAATTCCACGT
GTATGGCCGTGCGTGCCTGCGAACAGCTGGTAGAAAATAGAGCCAACGTG
GAAAAGAAATTTTCACGCGCTTGGAAAACCCAGAGCCACAACGCGCATCT
CA

protein sequence of rna1705

>rna1705-protein ID=rna1705-protein|Name=rna1705|organism=Nannochloropsis gaditana|type=polypeptide|length=259bp
MMTLSRLYFSTTAIAILCMYSIILPTSSAFLLRARPFPSPAATSTWSRCF
LSSSSTPAAPKKVLVPVADGSEEIESVTIIDVLVRAGAAVTVASVMPSAS
TATLPSSWQVTCSRGVKLVADKGIDDCLGEEWDLIACPGGLPGAEHLRDS
PALLTLLQRQDKAQRLVAAICASPAVVLHTHGFLTGKRATCFPAERFVSS
LARYEDGEEGVVEDGHVVTSRGPGTTLRFALTLVDRLCGRAKAEEVAKGL
LVDYPGKGN

mRNA from alignment at CM002457.1:1292264..1294615+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1705 ID=rna1705|Name=rna1705|organism=Nannochloropsis gaditana|type=mRNA|length=2352bp|location=Sequence derived from alignment at CM002457.1:1292264..1294615+ (Nannochloropsis gaditana)
GCTGCTGTCAGCAAGCGAGGCAAGTTTGCCATCCACGAGACGATGCTGGG
TGTCCCATGCGTCCTGGTACGGAGTGAGACGATCTGACCAGTCGTGAAGC
AGGACAGGGTCCCGtgcatgggagggaagggggctgAATGAAAGGGCATC
GGAGAGACGAgtggacggaggaggaggtatgGTTGGGAAGGCATTGATGA
AAAGAATCTGGGAAAACAGGATCAATAACCAACAGGAATGAGCAGGTAGA
CGTGATGATAACCATAAAATATTTTTCGAATGCGTGCCTGTCCGTTGGCG
TATCATGCCCTCCTGTTATCGTGAAAAAGAGGAATATGGTGTCAGGAGAT
TACATTAGCATGAGCAATAAAACTTGTGAAATAGATAATACTTGATTTGA
TTGGCCTGGAGAGTATCTGTGATATTCAAGCCCGGCAATAATGTTTGGAA
AATAGTGAAAAATAGGGCTGGGCGGAGCGTACTTTGACACCCACAGATAT
CATTTTGGCCTGCGCTGACAGGGGATAGGAATAAAAGTAGCATGACACAT
TAGCTTGACTTAATGGGAGGTTCGCGCTCGACACCTATATTTTTTCTATC
TAAATTTCGAGGACTTAATTGAGCGGGCGAGGTTGTACAGCAGGAGATAA
GCACAGGAGGCAAGAGGCGTGCTCAAGTGAAAGACTGTGGACGGGACAta
tttcctcttgctccctcaCTTCCATCACCCCCGCCGGCAAATTCGGTCAT
ATAATTGCGCTCACACATATACCTCGAAACCCATCTATCACACGTCCGTC
GCAGCAGCCGCGTGAATAGCCCCTTTGCGGAGCGTGGTATGGAAAGCGGT
AAGCAGTCTCGTGCCTGAATCCTTgtgaacctcccccctcccttccagaa
GCACAATGCTGTGAGCAATTCTGACTTTGCGTTACCCTCCGCGCTTGCAT
GCACGTGATATGATACGGCGCTCTTGCACTGTCTTTCACACGGTGGAGCA
TGTGCCTGAGTCGCTCACTATTTCCCTGTTatttctttcctgcccgCTCA
TCCAGCTTCCCTCTTCGTTTTTCCAAAACCCACATGATGACGCTGTCCCG
GCTCTATTTTTCCACCACGGCCATCGCCATACTTTGCATGTACTCCATta
tcctccccacctcctccgctttccttctccgcgcccgtccttttccttcc
cccgccgcgaCCTCCACCTGGTCCCGGTGCTTtttgtcatcctcctccac
gccggcAGCGCCCAAGAAAGTGCTCGTGCCGGTGGCCGACGGCTCGGAAG
AAATTGAGTCGGTGACGATCATCGACGTCCTTGTCCGGGCCGGGGCCGCC
GTGACCGTGGCCTCTGTcatgccctccgcctcgactGCCACTTTGCCCAG
CTCGTGGCAGGTGACGTGCTCTCGTGGCGTGAAGCTCGTGGCGGACAAGG
GCATCGACGACTgcctgggggaggaatgggattTGATCGCCTGCCCAGGC
GGACTGCCGGGGGCGGAACATTTGCGGGATTCCCCCGCCCTTTTGACGCT
GTTGCAACGTCAAGATAAAGCCCAACGCCTTGTGGCTGCCATCTGCGCCT
CGCCCGCGGTGGTTTTACACACCCATGGCTTCTTGACAGGGAAACGCGCC
ACGTGTTTCCCGGCGGAACGCTTCGTGTCGAGCCTGGCTCGCtacgagga
cggggaggagggcgtggtggaggacgggcatgTGGTCACGAGCCGTGGCC
CGGGGACGACGCTTCGCTTCGCCTTGACCTTAGTCGATCGCTTGTGCGGA
CGGGcgaaggcagaggaggtggcgaaaGGCTTGTTGGTAGACTATCCGGG
AAAGGGGAACTAGGGCAAGGGGGCGAatgggggagatggacggGATGTTT
CGGGgcacaggagagggagaggggtgaggcgaagagagagaggtagTGGT
GCGGTTcaggaggtaggaagggtgGGGCTTCCACACGCATTCAGAAGGGA
AACCGTGGGTgtcggaaggaaaaggtTTAAGGGGGTGGACGGTGAGAGGC
TGGCATGCCCAggtcgacaaggaggggcagggggggaggggtgggggtaa
ggaggaaaaggcaccGTGAGGTCCGTCGAGGGAGTGCACCCAAGCCAGCC
GGAACGTCCCCTGTGAGAGCAAAAAGAGAtcaaggggcagagggaaagga
gccgGACGTGggaccaaggaggggaagcaggagggtCAGGAATTCCACGT
GTATGGCCGTGCGTGCCTGCGAACAGCTGGTAGAAAATAGAGCCAACGTG
GAAAAGAAATTTTCACGCGCTTGGAAAACCCAGAGCCACAACGCGCATCT
CA

Coding sequence (CDS) from alignment at CM002457.1:1292264..1294615+

>rna1705 ID=rna1705|Name=rna1705|organism=Nannochloropsis gaditana|type=CDS|length=780bp|location=Sequence derived from alignment at CM002457.1:1292264..1294615+ (Nannochloropsis gaditana)
ATGATGACGCTGTCCCGGCTCTATTTTTCCACCACGGCCATCGCCATACT
TTGCATGTACTCCATtatcctccccacctcctccgctttccttctccgcg
cccgtccttttccttcccccgccgcgaCCTCCACCTGGTCCCGGTGCTTt
ttgtcatcctcctccacgccggcAGCGCCCAAGAAAGTGCTCGTGCCGGT
GGCCGACGGCTCGGAAGAAATTGAGTCGGTGACGATCATCGACGTCCTTG
TCCGGGCCGGGGCCGCCGTGACCGTGGCCTCTGTcatgccctccgcctcg
actGCCACTTTGCCCAGCTCGTGGCAGGTGACGTGCTCTCGTGGCGTGAA
GCTCGTGGCGGACAAGGGCATCGACGACTgcctgggggaggaatgggatt
TGATCGCCTGCCCAGGCGGACTGCCGGGGGCGGAACATTTGCGGGATTCC
CCCGCCCTTTTGACGCTGTTGCAACGTCAAGATAAAGCCCAACGCCTTGT
GGCTGCCATCTGCGCCTCGCCCGCGGTGGTTTTACACACCCATGGCTTCT
TGACAGGGAAACGCGCCACGTGTTTCCCGGCGGAACGCTTCGTGTCGAGC
CTGGCTCGCtacgaggacggggaggagggcgtggtggaggacgggcatgT
GGTCACGAGCCGTGGCCCGGGGACGACGCTTCGCTTCGCCTTGACCTTAG
TCGATCGCTTGTGCGGACGGGcgaaggcagaggaggtggcgaaaGGCTTG
TTGGTAGACTATCCGGGAAAGGGGAACTAG

Synonyms

Publications