rna1692, rna1692 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1692
Unique Name	rna1692
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	869
Alignment location	CM002457.1:1266963..1269458 +

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100501g3.4123.mrna
Orig protein id	gnl\|cribi\|Naga_100501g3.4123
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:1266963..1269458 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100501g3	gene1629	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1692	rna1692-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28986.1	cds1688	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:1266963..1269458+
coding sequence from alignment at CM002457.1:1266963..1269458+

mRNA sequence

>rna1692 ID=rna1692|Name=rna1692|organism=Nannochloropsis gaditana|type=mRNA|length=869bp
CGACGATAAGATTAATCATTTAATACATCAATAGAATTCCGCTAATTTAG
TTGACGGACACGATTTCCTTTTATTTATTTTTTCCCCCATGCTCATCACT
TCCACTTGAAGTTTGAGCATTACGTCAAGTTGTAGTTCTCGCTACCTTTT
CCTTCCCCCATCCGCTTGCCATGTCCTAAATTTTTCCAGTACCCGAACAC
GTATAGCTGTCCTCACCATCTTCCCTTTATCTGTTTGTGACATGCACAGC
CCCATGCAGAAAAGTTGGCTGAGCATCGCCTTGATCTTGGCGTGCATGAC
AACGCCGAGTGCCTTCCTACTGGCGCCTCCCACCACTCATCTAGTAAAAC
ACTATCAGGGCAGCACTCGCCTTTCTGCCTCCATTTATGAAGATGTCAAC
ACTGCCGTCAAACAAGCCATGAAAGACAAAGACAAGGAAAAGCTCAGCGC
CCTTCGAAACATCAAGTCGGCCCTCGGAAATGCTTTGAAAGAAGAAGGCG
CTGCGGAAACCTTGCCCGATGAAAAGGCCATTTTGATATTGACAAAACTA
CGCAAGCAACGTCAGGAATCGATCGAAATGTTTATTAAAGGAAATCGCGA
CGACATGGTCCAAGCAGAAAAAGCAGAACTGGCCATTTTGGAGACGTATT
TGCCCCAACTAGCAGACGAGGCTACTACGCGGGAATGGGTATCCGCTGCT
ATTCAGGAAACGGGCGCGAGCGCTAAAAGCGACATGGGAAAAGTCATGGG
CGTGATGATGAAAAGATATAAGGGAAAAACGGACAACAAACTCGTCTCCA
AGTTGGTGGGGGAGATGTTGGGTGCCTAATGCACCTGTAAAGGAAACGCA
TAGTGGAATTCGACCGGGT

protein sequence of rna1692

>rna1692-protein ID=rna1692-protein|Name=rna1692|organism=Nannochloropsis gaditana|type=polypeptide|length=810bp
MSPSTANRRQHTVIFLALGSLGDVLPVLAVAHRFGRRLDRRGPCPSRRKH
LPALVFITHTLYLPRLKTLLERALPRLSQAPVLHIEGIDSPPLPLRRAGP
VSVPDELEQCLAASRGHAPIALLACNLVARFGVHIGEILGAASSAVLAPS
LPPPTPSPSPTLLRNLLGPKFLRLLEDTGTDRLRYMEYGMLSLFLPAYHA
FRERHGLSPCLSSPSAPPAPRTASQAALYALRGNLPFLYGVSEGFFPKPG
YWPESSVFCGAWTWAQEEEVGREGGWEGGQEDGEGWVPDEELRRFVEGEG
WPPKKKSATEGNVRRVSGGDGKVKVSARTAGSSLPPLICLDMGSMIETEL
MGREEWEALVEEVLVALKKVFPSSTPAAALSVPASTPFAARRIAFRPPSP
SHPSPSTAPWAPLSTPCLLSSLAPPVWPPSPSLNVAREGKAGMSREGRFG
HGVKGPSPSGGERGKKRPRRAGRVQGGYAAEEKGEKKGKGCLKEEARGES
ERERLGEEGKEGEEGQEGKEAVEGLTKEGTKDEEEGRGNAGTTNTFLGEA
GFRLLLLHAPDQSCGAGKSRGGNPALPARRQRLEQERKEIPPWLSRRHGG
GAKRLVSPKNQDLRLPRQEPLPPHVQAEQSPTSPTSLPPFHHPGSFPSHP
YSSPYIFRLPPTTFVPHTWLFPRCRLVIHHGGLGTVMACLMGRRRGREGN
GVPQLIVPITKEQEMWAMRVEHLGVGRGLSREGGKGRRGGGRGGREGRGR
EGGREGGRGVYQALQEMERGRAMCLENVAQYREWFLAEDGVGRAVDLLVE
HMERNGNSKV

mRNA from alignment at CM002457.1:1266963..1269458+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1692 ID=rna1692|Name=rna1692|organism=Nannochloropsis gaditana|type=mRNA|length=2496bp|location=Sequence derived from alignment at CM002457.1:1266963..1269458+ (Nannochloropsis gaditana)
atgtccccctccacggcaAATCGCAGGCAACATACGGTCATATTTCTCGC
CTTGGGTAGTTTAGGGGATGTTTTACCCGTCCTGGCCGTCGCACATCGTT
TCGGGCGCAGGCTCGACCGCCGGggtccttgtccttctcgaAGGAAACAC
CTTCCGGCCCTTGTTTTCATCACACATACACTCTACCTCCCCCGTCTCAA
GACACTGCTCGAACGGGCCCTTCCTCGGCTTTCGCAGGCACCCGTGCTCC
ACATTGAAGGGATTGACagcccaccccttccccttcggaGGGCTGGACCC
GTCTCGGTCCCCGACGAGCTCGAGCAATGCCTGGCTGCTAGCCGCGGCCA
TGCACCCATCGCCCTCTTGGCGTGCAATCTCGTTGCTCGCTTCGGTGTCC
ACATTGGGGAAATCCTGGGCGCTGCCTCGTCTGCCgttctcgctccctcc
cttcccccgcccaccccctccccctcccctaccctccTCCGGAACCTGCT
AGGCCCCAAATTCCTGCGTCTCCTCGAGGACACAGGCACAGACCGGCTGA
GATACATGGAGTACGGGATGCtcagcctcttcctcccggcctaCCACGCC
TTCCGGGAGCGGCACGGGCTGAGCCcgtgcctttcctccccgtctgcccc
ccccgccccccggactgcctcccaggccgccCTCTACGCCCTTCGGGGga
accttcccttcctgtaCGGTGTCAGCGAAGGCTTTTTCCCAAAACCCGGA
TATTGGCCCGAGAGCTCGGTCTTTTGCGGGGCTTGGACCtgggcccagga
ggaggaggtggggagggagggcgggtgggagggagggcaagaggatgggg
agggatgggTTCCGGATGAAGAGCTCCGACGTtttgtggagggggaagga
tggcCGCCTAAGAAGAAATCGGCCACGGAGGGCAACGTGAGGCGTGTGTC
CGGGGGGGACGGCAAGGTTAAGGTGAGTGCAAGGACAGCAgggtcttccc
tccctccattgaTCTGCCTGGACATGGGCTCCATGATCGAAACGGAGCTg
atggggagagaagaaTGGGAGGCCcttgtggaggaggttctGGTCGCCTT
GAAGAAggtctttccctcttctacTCCGGCGGCGGCTCTTTCTGTGCCTG
CCTCTACCCCTTTCGCTGCCCGACGGATCGcgtttcgtcctccctctccc
tcccatccctccccctcgaccgcCCCTTGGGCCCCGCTTTCAACCCCttg
tcttctttcctctctggcACCGCCGGTgtggcctccttctccttcgttaA
ATGTggcacgggaggggaaggcagggatgagtagggaaggaaggttCGGT
CACGGGGTCaagggcccctccccctcgggcGGGGAGcgcgggaaaaaaag
accGAGACGCGCGGGTCGGGTCCAAGGGGGGTACGCGgccgaagagaagg
gggagaagaagggaaagggctgtcttaaggaggaggcgagaggggaaagc
gaaagggagaggttgggggaggaagggaaggagggggaggaagggcagga
ggggaaggaggccgtggagggactgacgaaggaagggacaaaggacgagg
aggagggcagagggaaTGCTGGCACGACAAACACCTTTCTTGGTGAAGCT
GGATTTCGTTTGTTGTTGCTGCACGCTCCCGACCAGTCCTGCGGCGCGGG
GAAatcaaggggggggaaccccgccctcccagcccgAAGGCAACGACTGG
AgcaagaaaggaaggaaatccCACCGTGGTTATCGCGCCGACACGGTGGA
GGGGCCAAGAGACTCGTATCGCCAAAAAACCAAGATTTACGGTTACCTCG
CCAGGAACCGTTACCTCCCCACGTACAAGCAGAGCagtcccctacctccc
ctacctccctacctcccttccaccaccccggaagcttcccttcccatcca
taCTCCTCCCCCTATATTTTCCGCCTGCCGCCCACGACTTTCGTGCCCCA
TACCTGGCTCTTCCCTCGCTGTCGGCTGGTCATCCACCATGGCGGGTTGG
GCACCGTGATGGCGTGCCTaatggggaggaggcgggggagggaggggaat
ggggTGCCACAGCTAATCGTCCCAATTACCAAGGAGCAAGAAATGTGGGC
CATGCGCGTGGAGCATTTGGGTGTGGGAAGGGGCttgagcagggaggggg
ggaaggggcggcgaggcggagggaggggtggaagggaggggcgtgggagg
gagggagggagggagggagggaggggcgtgtATCAGGCTCTTCAGGAGAT
GGAACGAGGTCGGGCAATGTGCCTGGAGAACGTTGCGCAGTACCGCGAGT
GGTTTCTTGCCGAAGACGGGGTAGGCCGAGCTGTTGACCTGCTCGTAGAG
CACATGGAGAGGAACGGAAATTCAAAAGTTTGAaccggaaggaaaggaac
cGAGGAATCGGCGGCCTTCACGATCGTATAGGATCTCCAGGAATGC

Coding sequence (CDS) from alignment at CM002457.1:1266963..1269458+

>rna1692 ID=rna1692|Name=rna1692|organism=Nannochloropsis gaditana|type=CDS|length=2433bp|location=Sequence derived from alignment at CM002457.1:1266963..1269458+ (Nannochloropsis gaditana)
atgtccccctccacggcaAATCGCAGGCAACATACGGTCATATTTCTCGC
CTTGGGTAGTTTAGGGGATGTTTTACCCGTCCTGGCCGTCGCACATCGTT
TCGGGCGCAGGCTCGACCGCCGGggtccttgtccttctcgaAGGAAACAC
CTTCCGGCCCTTGTTTTCATCACACATACACTCTACCTCCCCCGTCTCAA
GACACTGCTCGAACGGGCCCTTCCTCGGCTTTCGCAGGCACCCGTGCTCC
ACATTGAAGGGATTGACagcccaccccttccccttcggaGGGCTGGACCC
GTCTCGGTCCCCGACGAGCTCGAGCAATGCCTGGCTGCTAGCCGCGGCCA
TGCACCCATCGCCCTCTTGGCGTGCAATCTCGTTGCTCGCTTCGGTGTCC
ACATTGGGGAAATCCTGGGCGCTGCCTCGTCTGCCgttctcgctccctcc
cttcccccgcccaccccctccccctcccctaccctccTCCGGAACCTGCT
AGGCCCCAAATTCCTGCGTCTCCTCGAGGACACAGGCACAGACCGGCTGA
GATACATGGAGTACGGGATGCtcagcctcttcctcccggcctaCCACGCC
TTCCGGGAGCGGCACGGGCTGAGCCcgtgcctttcctccccgtctgcccc
ccccgccccccggactgcctcccaggccgccCTCTACGCCCTTCGGGGga
accttcccttcctgtaCGGTGTCAGCGAAGGCTTTTTCCCAAAACCCGGA
TATTGGCCCGAGAGCTCGGTCTTTTGCGGGGCTTGGACCtgggcccagga
ggaggaggtggggagggagggcgggtgggagggagggcaagaggatgggg
agggatgggTTCCGGATGAAGAGCTCCGACGTtttgtggagggggaagga
tggcCGCCTAAGAAGAAATCGGCCACGGAGGGCAACGTGAGGCGTGTGTC
CGGGGGGGACGGCAAGGTTAAGGTGAGTGCAAGGACAGCAgggtcttccc
tccctccattgaTCTGCCTGGACATGGGCTCCATGATCGAAACGGAGCTg
atggggagagaagaaTGGGAGGCCcttgtggaggaggttctGGTCGCCTT
GAAGAAggtctttccctcttctacTCCGGCGGCGGCTCTTTCTGTGCCTG
CCTCTACCCCTTTCGCTGCCCGACGGATCGcgtttcgtcctccctctccc
tcccatccctccccctcgaccgcCCCTTGGGCCCCGCTTTCAACCCCttg
tcttctttcctctctggcACCGCCGGTgtggcctccttctccttcgttaA
ATGTggcacgggaggggaaggcagggatgagtagggaaggaaggttCGGT
CACGGGGTCaagggcccctccccctcgggcGGGGAGcgcgggaaaaaaag
accGAGACGCGCGGGTCGGGTCCAAGGGGGGTACGCGgccgaagagaagg
gggagaagaagggaaagggctgtcttaaggaggaggcgagaggggaaagc
gaaagggagaggttgggggaggaagggaaggagggggaggaagggcagga
ggggaaggaggccgtggagggactgacgaaggaagggacaaaggacgagg
aggagggcagagggaaTGCTGGCACGACAAACACCTTTCTTGGTGAAGCT
GGATTTCGTTTGTTGTTGCTGCACGCTCCCGACCAGTCCTGCGGCGCGGG
GAAatcaaggggggggaaccccgccctcccagcccgAAGGCAACGACTGG
AgcaagaaaggaaggaaatccCACCGTGGTTATCGCGCCGACACGGTGGA
GGGGCCAAGAGACTCGTATCGCCAAAAAACCAAGATTTACGGTTACCTCG
CCAGGAACCGTTACCTCCCCACGTACAAGCAGAGCagtcccctacctccc
ctacctccctacctcccttccaccaccccggaagcttcccttcccatcca
taCTCCTCCCCCTATATTTTCCGCCTGCCGCCCACGACTTTCGTGCCCCA
TACCTGGCTCTTCCCTCGCTGTCGGCTGGTCATCCACCATGGCGGGTTGG
GCACCGTGATGGCGTGCCTaatggggaggaggcgggggagggaggggaat
ggggTGCCACAGCTAATCGTCCCAATTACCAAGGAGCAAGAAATGTGGGC
CATGCGCGTGGAGCATTTGGGTGTGGGAAGGGGCttgagcagggaggggg
ggaaggggcggcgaggcggagggaggggtggaagggaggggcgtgggagg
gagggagggagggagggagggaggggcgtgtATCAGGCTCTTCAGGAGAT
GGAACGAGGTCGGGCAATGTGCCTGGAGAACGTTGCGCAGTACCGCGAGT
GGTTTCTTGCCGAAGACGGGGTAGGCCGAGCTGTTGACCTGCTCGTAGAG
CACATGGAGAGGAACGGAAATTCAAAAGTTTGA

Synonyms

Publications