rna1688, rna1688 (mRNA) Nannochloropsis gaditana

Overview
Namerna1688
Unique Namerna1688
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length585
Alignment locationCM002457.1:1261493..1261783 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100817g3.7275.mrna
Orig protein idgnl|cribi|Naga_100817g3.7275
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1261493..1261783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100817g3gene1625Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1688rna1688-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28990.1cds1684Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1688 ID=rna1688|Name=rna1688|organism=Nannochloropsis gaditana|type=mRNA|length=585bp
ATGACAACATTCACAACCGATTTAAGCCCCAGGCCCCTCCCATCAAAGGC
CTCATCTTTGAGGCTTCAATGGTACGTCCACCCCACCAAGTTGGACTATC
GCGTGGTCTTGCCCCTCTTTTTAGAAGGGTTGCGCGAGGTGAAAGACCCG
TACAGGTACTTGGCTGTGCGGGGAAGCATGGACTTGATCGCCTCCTGCCC
CTCCAAGCTCATGGCTTGTGTGCCCTTCCTGCTTCCCCCTTTGAAACGAG
CCCTCGACACGCGCCATCCGCTAATCCTTGCAACCAGTCTAACCGTTCTG
CAGGAGTTTATTCTGGCGGATCCGAGCCGGATTGGCCCGGCATTAGTCCC
TCATTACCACCAACTATTAGGGGCCTCCGCCGTCATCAACAAGCAGACCT
ATGGGAACGAGGACAGAAAAGGGGAGATGGCAAGCTCCCAACGTCGGTTG
TGCGTGACAGATCTCATGAATGAGACACTGACGCTCTTGGAAATCACGGG
CGGAAGAGATGCCTTCCTGCACATTCGTTACATGGTGCCGACATACGACT
CGGTCTTGCAACAGGGGGTCAGGAGTATATGGTGA
back to top

protein sequence of rna1688

>rna1688-protein ID=rna1688-protein|Name=rna1688|organism=Nannochloropsis gaditana|type=polypeptide|length=81bp
MPVDRMMKKTSTPHQAWGGAKRAKAFYAAEKQDQKKDGTEESSIQTKLAH
LMSPKAGRDSRTGCEFERKTTRGARRGAQGG
back to top

mRNA from alignment at CM002457.1:1261493..1261783-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1688 ID=rna1688|Name=rna1688|organism=Nannochloropsis gaditana|type=mRNA|length=291bp|location=Sequence derived from alignment at CM002457.1:1261493..1261783- (Nannochloropsis gaditana)
ATGCCCGTGGACAGAATGATGAAAAAGACCTCAACACCTCATCAAGCATG
GGGAGGGGCCAAGCGTGCCAAGGCATTTTACGCGGCTGAGAAGCAGGATC
AGAAAAAAGACGGGTGGGCGGGCGGGAGGAAGAAAATGCGGGGGTGAGGG
AAGAAGAGGACTGAGGAATCAAGCATCCAAACAAAGCTCGCCCACCTCAT
GTCACCGAAGGCGGGAAGGGACAGTCGCACAGGATGTGAATTCGAAAGGA
AAACTACCAGAGGAGCGAGGCGAGGTGCCCAAGGTGGCTAG
back to top

Coding sequence (CDS) from alignment at CM002457.1:1261493..1261783-

>rna1688 ID=rna1688|Name=rna1688|organism=Nannochloropsis gaditana|type=CDS|length=492bp|location=Sequence derived from alignment at CM002457.1:1261493..1261783- (Nannochloropsis gaditana)
GACTGAGGAATCAAGCATCCAAACAAAGCTCGCCCACCTCATGTCACCGA
AGGCGGGAAGGGACAGTCGCACAGGATGTGAATTCGAAAGGAAAACTACC
AGAGGAGCGAGGCGAGGTGCCCAAGGTGGCTAGATGCCCGTGGACAGAAT
GATGAAAAAGACCTCAACACCTCATCAAGCATGGGGAGGGGCCAAGCGTG
CCAAGGCATTTTACGCGGCTGAGAAGCAGGATCAGAAAAAAGACGGGACT
GAGGAATCAAGCATCCAAACAAAGCTCGCCCACCTCATGTCACCGAAGGC
GGGAAGGGACAGTCGCACAGGATGTGAATTCGAAAGGAAAACTACCAGAG
GAGCGAGGCGAGGTGCCCAAGGTGGCTAGATGCCCGTGGACAGAATGATG
AAAAAGACCTCAACACCTCATCAAGCATGGGGAGGGGCCAAGCGTGCCAA
GGCATTTTACGCGGCTGAGAAGCAGGATCAGAAAAAAGACGG
back to top
Synonyms
Publications