rna1683, rna1683 (mRNA) Nannochloropsis gaditana

Overview
Namerna1683
Unique Namerna1683
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length303
Alignment locationCM002457.1:1252866..1253959 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100919g3.8313.mrna
Orig protein idgnl|cribi|Naga_100919g3.8313
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1252866..1253959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100919g3gene1620Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1683rna1683-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28993.1cds1679Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1683 ID=rna1683|Name=rna1683|organism=Nannochloropsis gaditana|type=mRNA|length=303bp
ATGACGGTGGGTAGCACCACCCTCACGGCTGTTGGTAACGATGACGTTTT
CATGATCAAGCTGGACTCCAGCGGCAGCCCTGTGTGGGCTACGAGCTTCG
GAGGCAGCGAATACAGCAGGGGAGTCGGTATTGCTGTGGATGCATCGGGC
AGCTCCTACACTACCGGGTATTTCGACGGAAACATGACGGACTTTAGTGT
ATCGCTAATCAAAGAGAATCATGTGTGTGGCGCGACGCCGTGCCTCTATC
GTGGCAGTGGAGGAAGCAAGTGCATCTGTTTTGGACAGAGCGCGCCCCCA
TAG
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protein sequence of rna1683

>rna1683-protein ID=rna1683-protein|Name=rna1683|organism=Nannochloropsis gaditana|type=polypeptide|length=103bp
MALFLLLHFSELRSAVSSTIKEQSKTRDLSDTSIREPEAQPKSRETLCEE
DEKQHIQAISLHSSPSSFRIEMSKRLPKCLESIKCSVSKAGDNNPFSRTT
IMY
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mRNA from alignment at CM002457.1:1252866..1253959+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1683 ID=rna1683|Name=rna1683|organism=Nannochloropsis gaditana|type=mRNA|length=1094bp|location=Sequence derived from alignment at CM002457.1:1252866..1253959+ (Nannochloropsis gaditana)
CTTGAGAAAATCGCTGTCCCTGACCCAAAAGCACAAATGGCTGCAGAGGA
TTGATTGTGGGAGCCGCAGTCGGCGCGCAAGTCGCGGCTCTTTTGACTTT
CGAGTACCGCACTTTTACAGTGGCGAAGTTGGCCAGCGGCGTGATGCAAA
AGGCGTCTGTAGCATTCACTTGATAAGCGAAAGCGTCCACCACTAACGTC
TCAGGGGCACACTCGTCCGCCTTTACCTTGACGCGAAAGcggcgcttccc
ccccttgctttTGGTGAAATCGATACCAAGCCAGTAAATGACAGTCGCTC
CATCCGTATTCTCAAGGACTTGCGCTGGCGCATAGAGCTTTGAGAACGCA
TGGTTCGCTATTTTCTCTACTGATAAGCCATTTGGCAGCTTCAACTGGAA
CTCCAGATTGTCGACGGGACCTTCACTACTCAGCGTGACGGTGATTTTGG
CAAGGCCCTTCCCAGCAAGGATCCCACGATTAGCACTAGGCCTTGCTTTG
GCCTTGAGAGAAAGCCGCGGACATTCTTGTGAGACAGTGATGAGCATGCT
TGCCAAgcccaggagggcgacaaggaggataCTCGAGGAAAATCTCATAC
TGAAATGCGCTGAATCTGTGCTTGAATGATAGCCTGTAGTGGGTttggga
gagaaagcggaaACAAAGATCTTGGGCTTTGAAGCAGTTTATGGTGTCAG
TCAAGAAGCACACGACCATCGAAACTCATGGCCCTGTTTTTACTTCTTCA
TTTTTCAGAGCTGCGGAGTGCTGTGTCAAGCACAATCAAGGAGCAAAGCA
AAACTCGAGACTTGTCAGACACAAGCATAAGGGAGCCTGAAGCGCAGCCC
AAATCGCGAGAGACTCTctgtgaagaggatgaaaaacAACACATACAAGC
AATCTCTTTACATAGCTCGCCTTCAAGCTTCCGTATAGAAATGTCCAAAA
GACTTCCAAAGTGTCTCGAAAGTATTAAGTGCTCGGTGTCGAAAGCAGGC
GATAATAACCCCTTCAGCCGGACTACAATCATGTATTGATAGCAGAAAAA
CTAAACGGATATGTACGAGAAAACAAAGATATGACTTTAAAAAA
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Coding sequence (CDS) from alignment at CM002457.1:1252866..1253959+

>rna1683 ID=rna1683|Name=rna1683|organism=Nannochloropsis gaditana|type=CDS|length=312bp|location=Sequence derived from alignment at CM002457.1:1252866..1253959+ (Nannochloropsis gaditana)
ATGGCCCTGTTTTTACTTCTTCATTTTTCAGAGCTGCGGAGTGCTGTGTC
AAGCACAATCAAGGAGCAAAGCAAAACTCGAGACTTGTCAGACACAAGCA
TAAGGGAGCCTGAAGCGCAGCCCAAATCGCGAGAGACTCTctgtgaagag
gatgaaaaacAACACATACAAGCAATCTCTTTACATAGCTCGCCTTCAAG
CTTCCGTATAGAAATGTCCAAAAGACTTCCAAAGTGTCTCGAAAGTATTA
AGTGCTCGGTGTCGAAAGCAGGCGATAATAACCCCTTCAGCCGGACTACA
ATCATGTATTGA
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Synonyms
Publications