rna1680, rna1680 (mRNA) Nannochloropsis gaditana

Overview
Namerna1680
Unique Namerna1680
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2623
Alignment locationCM002457.1:1245306..1245594 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100373g7.5925.mrna
Orig protein idgnl|cribi|Naga_100373g7.5925
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1245306..1245594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100373g7gene1617Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1680rna1680-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28999.1cds1676Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1680 ID=rna1680|Name=rna1680|organism=Nannochloropsis gaditana|type=mRNA|length=2623bp
CTCGTAGCAACTCTAGGGCAGGCCAGGAAATCTTGACTGGTCAAACAGAA
AAGCTTAAAAAAAAGAACAAGTGCAAGCTTCAACTGGCGAGAAGAGCGAC
GACCCCCAATGCTCTAGCTGTCTTTCCGTAACACTCCCGTTCACTATAGT
GGTTGACAGAAAACAATACACCCCACAAAAAGCTTCGACAAAAATGCCTC
AGACTAGTGATGAAGACCAAGTAGCTGATGATGCGGCTTTGCTGGGACCA
ACGCAACTTTCAGGAAAACATTTCACCAAAGAAGGACCTCAGAGCCCAAG
GCCACTGCCATGTGCTTGGACCTCTCAAAGACGACAGCGACGCTTTGCCT
GCGTCATTTATACAGCCTCAACACTAGTCGTCATGATCTTGCTAGCCCTG
ATTCCTGACCGAACTTTTTTCCACGAACGCCGGCAATTGTGGGGACGTCT
TTGTCTGAGTGTGGCAGCGGCCCTGGTGATGTTTGTTGGTGTGCAATGCA
GCAACCCGGGGTATGTAGAAAGAGGAGCACTCACAGAAGTACACGGGCAA
GGCCCGGACAAGCCAGCGAAGCTACTGGAAGAAGGAGCATGTCATACGAA
AAAAAGTGAAGTTGAAGGGAGCGGAGCACAGTATGAGGAGAAGCAACCCA
TGATGACGCTTCAAGACATGGGCCCAACAGGCAAGGTCATGGAGCGACCA
CCGGGCATAAAGGGCACCCACACTCAGACAGGAATGGGAAGGCAGTGTGG
TAACGGGAACAAGTCGGGACGGGAGGAAGGAAGCGAAGAGGATGAAATGG
ACCGCAGGGAAGGCGATGGCGACGGCCGCGATGGGATGGCAAGCCCAAGT
CGGACGAGCGGTAGCGATAGTGCGTGGCCAAGGGAGGATAAAGAAAGGAG
ACGAAGGCAACATTTTATCTCGAGAGGGTGGTGCCGATGGTGTGAGATGA
GAAAGGTGAGAAAGGCGGGGGAAAAACCAAAGGTACCATTCAGATAGGGG
TACCCCGTTTCACGCCTTCCCCTAACCTCGCCTGGGGCTCTGCACCACCC
TCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCC
CTTGGTTCCCCCCACTATCACGTCCCGCCAGCCCTTACGTGCTCATCACT
GTCGGCACTGCCGCCGCTGCGTTTATTCTCTGGATCACCATTGCCATTTT
CTGGCGACTTGTGTGGGAGAACGTAACCATTGTCGTTTCCTGCTGTACCT
CTTCGCCCAGACCCTGGCGTGCATTTCGGGGCTGCGAGTGTTGGACACGG
GATATATGCGGAGGTAGGCAGAGAAAGGGGAGGGGACCGTGCGGGAGGGA
GGAATGAGACGAGCGATTGTGGCTTGGGTCATGGAATCGAAAGGGATGGA
GGGCTTGTAAGGTGGGGAAGAAGGAAAGGACGCAGAGTTCTGAAGATAGG
GGAACCTCGCAGCATTCCATCATCCTTGTCATTGTGAGAGGACGCCCGAA
CATGGAAATAATTGACTCGTTTCATCGGCCATCGGTCTCCCTTGCCCTCC
TCCCTCCTTCTCCTTCCGATGCCTTATCAAAACAAGCGCCGACATGCTCG
ACTATTTTCGGGCGAACCTGCTTCCCCTTTCCCTTGCGGTGGTAGTATGG
ACCCTGACCGGGGTGGCCGGTCTCCTCCTCCTCTTCCACTGCTTCCTCGC
TCTCTCCTCCCTCACCTCCCACGAATGCCTCAAAGGCCCCGAGCGGATCC
CCTACCTCCGCAGGGAAGGAGCACAGGGGAGGGGGAGCCGTGGCCACGAC
GTATTGGATCTCCCTTTCTCCCGTGGGCTATGCGAGAATCTGGCTGCCTT
TTGCTGCCTCCGTGACGGTCTGTGGGCGTGTCTGCTGGGAAAGACCTGGG
AGCCGACGCGATGGACGAAGGTAAGGCCGGGGGAGGGAGGGGAGGATTCC
ACGGACGTCTGTGCATACCCCTACCGAAACGCGTATTGGTCATGTTGTTG
ATGAGAGTGAAGATGACGAGGTTAAGGAGAGGTGGATGTAACGGAGAGGG
GCACGGGCACAGGATGTAAAAGGACGGAGAGTGAGAAAGTTTGCGAAGCA
AAAAAAAGAGAGGGTAGACAAGGTATATTCAGTCCATATAGCTCTGTGTT
GGGCCTCTTCTCTTCCTCGCTCTGGTCGAAGGCTGATCGGAGGGCGATCC
TTTTGCTGCTCTCTGCACATACATTAGCTGGATTGAAACCCCTTCGAATT
GGTACTCAACATTTTTGGTTGCTATTTTTACCTGATTAACTTTTCATTTT
TGAATTCTTCACGCGACTATATGTTGAAAACTTGTACACACTGCTTTCTC
CCCCTCTCAAACCTCTTCAAATCACTCCTCCCACCCTCTCTCGAGCCCTA
CTCCTTCCCCTTTTTCACAATAGTGTCCATTGCCTTCGCCAACGTCACGT
CTTTCTGGGAGACCCCTCCCGCGTCGTGAGTGGTCAAGACGACGTGAACT
TTGTTGTACACATTGCTCCACTCCGGGTGGTGGTTGTGTTGCTCCGCCAG
TAGCGCGACACGCGACATGAAACCCCAGGCCTAGAGGGAGAGAGGAATAT
TTGTCGGGAACAAGAGATACGGG
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protein sequence of rna1680

>rna1680-protein ID=rna1680-protein|Name=rna1680|organism=Nannochloropsis gaditana|type=polypeptide|length=70bp
MMLPNVKISTIKNPTPADSLSFVGCHPYATNDPGRIRAIVRRGEHQFLAY
FSTMGEYSTEYNQDTCASSF
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mRNA from alignment at CM002457.1:1245306..1245594-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1680 ID=rna1680|Name=rna1680|organism=Nannochloropsis gaditana|type=mRNA|length=289bp|location=Sequence derived from alignment at CM002457.1:1245306..1245594- (Nannochloropsis gaditana)
ATGATGTTGCCAAACGTGAAAATCAGCACGATTAAAAACCCGACCCCTGC
TGATTGTGTGAAGCCGGGGGCGTGATAGAGGTGCCGCATATTTCTCTCGT
GAGATTTCATATGGTGGATAAACTTTGGAAGCCCTTTCCTTTGTTGGCTG
TCATCCTTACGCAACAAATGACCCTGGACGTATTCGTGCGATAGTCAGAC
GCGGCGAGCATCAATTTTTGGCGTATTTTTCGACCATGGGTGAATATTCG
ACTGAATATAACCAAGATACGTGTGCTTCCTCATTTTGA
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Coding sequence (CDS) from alignment at CM002457.1:1245306..1245594-

>rna1680 ID=rna1680|Name=rna1680|organism=Nannochloropsis gaditana|type=CDS|length=426bp|location=Sequence derived from alignment at CM002457.1:1245306..1245594- (Nannochloropsis gaditana)
CCCTTTCCTTTGTTGGCTGTCATCCTTACGCAACAAATGACCCTGGACGT
ATTCGTGCGATAGTCAGACGCGGCGAGCATCAATTTTTGGCGTATTTTTC
GACCATGGGTGAATATTCGACTGAATATAACCAAGATACGTGTGCTTCCT
CATTTTGAATGATGTTGCCAAACGTGAAAATCAGCACGATTAAAAACCCG
ACCCCTGCTGATTCCCTTTCCTTTGTTGGCTGTCATCCTTACGCAACAAA
TGACCCTGGACGTATTCGTGCGATAGTCAGACGCGGCGAGCATCAATTTT
TGGCGTATTTTTCGACCATGGGTGAATATTCGACTGAATATAACCAAGAT
ACGTGTGCTTCCTCATTTTGAATGATGTTGCCAAACGTGAAAATCAGCAC
GATTAAAAACCCGACCCCTGCTGATT
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Synonyms
Publications