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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100373g8.5923.mrna |
| Orig protein id | gnl|cribi|Naga_100373g8.5923 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:1241591..1244352 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1679 ID=rna1679|Name=rna1679|organism=Nannochloropsis gaditana|type=mRNA|length=2350bp
CTCGTAGCAACTCTAGGGCAGGCCAGGAAATCTTGACTGGTCAAACAGAA
AAGCTTAAAAAAAAGAACAAGTGCAAGCTTCAACTGGCGAGAAGAGCGAC
GACCCCCAATGCTCTAGCTGTCTTTCCGTAACACTCCCGTTCACTATAGT
GGTTGACAGAAAACAATACACCCCACAAAAAGCTTCGACAAAAATGCCTC
AGACTAGTGATGAAGACCAAGTAGCTGATGATGCGGCTTTGCTGGGACCA
ACGCAACTTTCAGGAAAACATTTCACCAAAGAAGGACCTCAGAGCCCAAG
GCCACTGCCATGTGCTTGGACCTCTCAAAGACGACAGCGACGCTTTGCCT
GCGTCATTTATACAGCCTCAACACTAGTCGTCATGATCTTGCTAGCCCTG
ATTCCTGACCGAACTTTTTTCCACGAACGCCGGCAATTGTGGGGACGTCT
TTGTCTGAGTGTGGCAGCGGCCCTGGTGATGTTTGTTGGTGTGCAATGCA
GCAACCCGGGGTATGTAGAAAGAGGAGCACTCACAGAAGTACACGGGCAA
GGCCCGGACAAGCCAGCGAAGCTACTGGAAGAAGGAGCATGTCATACGAA
AAAAAGTGAAGTTGAAGGGAGCGGAGCACAGTATGAGGAGAAGCAACCCA
TGATGACGCTTCAAGACATGGGCCCAACAGGCAAGGTCATGGAGCGACCA
CCGGGCATAAAGGGCACCCACACTCAGACAGGAATGGGAAGGCAGTGTGG
TAACGGGAACAAGTCGGGACGGGAGGAAGGAAGCGAAGAGGATGAAATGG
ACCGCAGGGAAGGCGATGGCGACGGCCGCGATGGGATGGCAAGCCCAAGT
CGGACGAGCGGTAGCGATAGTGCGTGGCCAAGGGAGGATAAAGAAAGGAG
ACGAAGGCAACATTTTATCTCGAGAGGGTGGTGCCGATGGTGTGAGATGA
GAAAGGTGAGAAAGGCGGGGGAAAAACCAAAGGTACCATTCAGATAGGGG
TACCCCGTTTCACGCCTTCCCCTAACCTCGCCTGGGGCTCTGCACCACCC
TCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCC
CTTGGTTCCCCCCACTATCACGTCCCGCCAGCCCTTACGTGCTCATCACT
GTCGGCACTGCCGCCGCTGCGTTTATTCTCTGGATCACCATTGCCATTTT
CTGGCGACTTGTGTGGGAGAACGTAACCATTGTCGTTTCCTGCTGTACCT
CTTCGCCCAGACCCTGGCGTGCATTTCGGGGCTGCGAGTGTTGGACACGG
GATATATGCGGAGCGCCGACATGCTCGACTATTTTCGGGCGAACCTGCTT
CCCCTTTCCCTTGCGGTGGTAGTATGGACCCTGACCGGGGTGGCCGGTCT
CCTCCTCCTCTTCCACTGCTTCCTCGCTCTCTCCTCCCTCACCTCCCACG
AATGCCTCAAAGGCCCCGAGCGGATCCCCTACCTCCGCAGGGAAGGAGCA
CAGGGGAGGGGGAGCCGTGGCCACGACGTATTGGATCTCCCTTTCTCCCG
TGGGCTATGCGAGAATCTGGCTGCCTTTTGCTGCCTCCGTGACGGTCTGT
GGGCGTGTCTGCTGGGAAAGACCTGGGAGCCGACGCGATGGACGAAGGTA
AGGCCGGGGGAGGGAGGGGAGGATTCCACGGACGTCTGTGCATACCCCTA
CCGAAACGCGTATTGGTCATGTTGTTGATGAGAGTGAAGATGACGAGGTT
AAGGAGAGGTGGATGTAACGGAGAGGGGCACGGGCACAGGATGTAAAAGG
ACGGAGAGTGAGAAAGTTTGCGAAGCAAAAAAAAGAGAGGGTAGACAAGG
TATATTCAGTCCATATAGCTCTGTGTTGGGCCTCTTCTCTTCCTCGCTCT
GGTCGAAGGCTGATCGGAGGGCGATCCTTTTGCTGCTCTCTGCACATACA
TTAGCTGGATTGAAACCCCTTCGAATTGGTACTCAACATTTTTGGTTGCT
ATTTTTACCTGATTAACTTTTCATTTTTGAATTCTTCACGCGACTATATG
TTGAAAACTTGTACACACTGCTTTCTCCCCCTCTCAAACCTCTTCAAATC
ACTCCTCCCACCCTCTCTCGAGCCCTACTCCTTCCCCTTTTTCACAATAG
TGTCCATTGCCTTCGCCAACGTCACGTCTTTCTGGGAGACCCCTCCCGCG
TCGTGAGTGGTCAAGACGACGTGAACTTTGTTGTACACATTGCTCCACTC
CGGGTGGTGGTTGTGTTGCTCCGCCAGTAGCGCGACACGCGACATGAAAC
CCCAGGCCTAGAGGGAGAGAGGAATATTTGTCGGGAACAAGAGATACGGG back to topprotein sequence of rna1679 >rna1679-protein ID=rna1679-protein|Name=rna1679|organism=Nannochloropsis gaditana|type=polypeptide|length=267bp
MPQTSDEDQVADDAALLGPTQLSGKHFTKEGPQSPRPLPCAWTSQRRQRR
FACVIYTASTLVVMILLALIPDRTFFHERRQLWGRLCLSVAAALVMFVGV
QCSNPGYVERGALTEVHGQGPDKPAKLLEEGACHTKKSEVEGSGAQYEEK
QPMMTLQDMGPTGKVMERPPGIKGTHTQTGMGRQCGNGNKSGREEGSEED
EMDRREGDGDGRDGMASPSRTSGSDSAWPREDKERRRRQHFISRGWCRWC
EMRKVRKAGEKPKVPFR back to topmRNA from alignment at CM002457.1:1241591..1244352- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1679 ID=rna1679|Name=rna1679|organism=Nannochloropsis gaditana|type=mRNA|length=2762bp|location=Sequence derived from alignment at CM002457.1:1241591..1244352- (Nannochloropsis gaditana)
CTCGTAGCAACTCTAGGGCAGGCCAGGAAATCTTGACTGGTCAAACAGAA
AAGCTTAAAAAAAAGAACAAGTGCAAGCTTCAACTGGCGAGAAGAGCGAC
GACCCCCAATGCTCTAGCTGTCTTTCCGTAACACTCCCGTTCACTATAGT
GGTTGACAGAAAACAATACACCCCACAAAAAGCTTCGACAAAAATGCCTC
AGACTAGTGATGAAGACCAAGTAGCTGATGATGCGGCTTTGCTGGGACCA
ACGCAACTTTCAGGAAAACATTTCACCAAAGAAGGACCTCAGAGCCCAAG
GCCACTGCCATGTGCTTGGACCTCTCAAAGACGACAGGTAAGCGAGTATG
ACTTGGTCATGGTAATAGATTTGATTCTCTTTTCCCCAAATCAAGCAATC
AAACTTTAAAGGCGGATTATTTCATGTTGGGGCGTAAAAGATGAGGTATT
AACTCCTTCCGTTAATTTCACACAAGCGACGCTTTGCCTGCGTCATTTAT
ACAGCCTCAACACTAGTCGTCATGATCTTGCTAGCCCTGATTCCTGACCG
AACTTTTTTCCACGAACGCCGGCAATTGTGGGGACGTCTTTGTCTGAGTG
TGGCAGCGGCCCTGGTGATGTTTGTTGGTGTGCAATGCAGCAACCCGGGG
TATGTAGAAAGAGGAGCACTCACAGAAGTACACGGGCAAGGCCCGGACAA
GCCAGCGAAGCTACTGGAAGAAGGAGCATGTCATACGAAAAAAAGTGAAG
TTGAAGGGAGCGGAGCACAGTATGAGGAGAAGCAACCCATGATGACGCTT
CAAGACATGGGCCCAACAGGCAAGGTCATGGAGCGACCACCGGGCATAAA
GGGCACCCACACTCAGACAGGAATGGGAAGGCAGTGTGGTAACGGGAACA
AGTCGGGACGGGAGGAAGGAAGCGAAGAGGATGAAATGGACCGCAGGGAA
GGCGATGGCGACGGCCGCGATGGGATGGCAAGCCCAAGTCGGACGAGCGG
TAGCGATAGTGCGTGGCCAAGGGAGGATAAAGAAAGGAGACGAAGGCAAC
ATTTTATCTCGAGAGGGTGGTGCCGATGGTGTGAGATGAGAAAGGTGAGA
AAGGCGGGGGAAAAACCAAAGGTACCATTCAGATAGGGGTACCCCGTTTC
ACGCCTTCCCCTAACCTCGCCTGGGGCTCTGCACCACCCTCCTTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCTTGGTTCCCC
CCACTATCACGTCCCGCCAGCCCTTACGTGCTCATCACTGTCGGCACTGC
CGCCGCTGCGTTTATTCTCTGGATCACCATTGCCATTTTCTGGCGACTTG
TGTGGGAGAACGTAACCATTGTCGTTTCCTGCTGTACCTCTTCGCCCAGA
CCCTGGCGTGCATTTCGGGGCTGCGAGTGTTGGACACGGGATATATGCGG
AGGTAGGCAGAGAAAGGGGAGGGGACCGTGCGGGAGGGAGGAATGAGACG
AGCGATTGTGGCTTGGGTCATGGAATCGAAAGGGATGGAGGGCTTGTAAG
GTGGGGAAGAAGGAAAGGACGCAGAGTTCTGAAGATAGGGGAACCTCGCA
GCATTCCATCATCCTTGTCATTGTGAGAGGACGCCCGAACATGGAAATAA
TTGACTCGTTTCATCGGCCATCGGTCTCCCTTGCCCTCCTCCCTCCTTCT
CCTTCCGATGCCTTATCAAAACAAGCGCCGACATGCTCGACTATTTTCGG
GCGAACCTGCTTCCCCTTTCCCTTGCGGTGGTAGTATGGACCCTGACCGG
GGTGGCCGGTCTCCTCCTCCTCTTCCACTGCTTCCTCGCTCTCTCCTCCC
TCACCTCCCACGAATGCCTCAAAGGCCCCGAGCGGATCCCCTACCTCCGC
AGGGAAGGAGCACAGGGGAGGGGGAGCCGTGGCCACGACGTATTGGATCT
CCCTTTCTCCCGTGGGCTATGCGAGAATCTGGCTGCCTTTTGCTGCCTCC
GTGACGGTCTGTGGGCGTGTCTGCTGGGAAAGACCTGGGAGCCGACGCGA
TGGACGAAGGTAAGGCCGGGGGAGGGAGGGGAGGATTCCACGGACGTCTG
TGCATACCCCTACCGAAACGCGTATTGGTCATGTTGTTGATGAGAGTGAA
GATGACGAGGTTAAGGAGAGGTGGATGTAACGGAGAGGGGCACGGGCACA
GGATGTAAAAGGACGGAGAGTGAGAAAGTTTGCGAAGCAAAAAAAAGAGA
GGGTAGACAAGGTATATTCAGTCCATATAGCTCTGTGTTGGGCCTCTTCT
CTTCCTCGCTCTGGTCGAAGGCTGATCGGAGGGCGATCCTTTTGCTGCTC
TCTGCACATACATTAGCTGGATTGAAACCCCTTCGAATTGGTACTCAACA
TTTTTGGTTGCTATTTTTACCTGATTAACTTTTCATTTTTGAATTCTTCA
CGCGACTATATGTTGAAAACTTGTACACACTGCTTTCTCCCCCTCTCAAA
CCTCTTCAAATCACTCCTCCCACCCTCTCTCGAGCCCTACTCCTTCCCCT
TTTTCACAATAGTGTCCATTGCCTTCGCCAACGTCACGTCTTTCTGGGAG
ACCCCTCCCGCGTCGTGAGTGGTCAAGACGACGTGAACTTTGTTGTACAC
ATTGCTCCACTCCGGGTGGTGGTTGTGTTGCTCCGCCAGTAGCGCGACAC
GCGACATGAAACCCCAGGCCTAGAGGGAGAGAGGAATATTTGTCGGGAAC
AAGAGATACGGG back to topCoding sequence (CDS) from alignment at CM002457.1:1241591..1244352- >rna1679 ID=rna1679|Name=rna1679|organism=Nannochloropsis gaditana|type=CDS|length=1608bp|location=Sequence derived from alignment at CM002457.1:1241591..1244352- (Nannochloropsis gaditana)
CGACGCTTTGCCTGCGTCATTTATACAGCCTCAACACTAGTCGTCATGAT
CTTGCTAGCCCTGATTCCTGACCGAACTTTTTTCCACGAACGCCGGCAAT
TGTGGGGACGTCTTTGTCTGAGTGTGGCAGCGGCCCTGGTGATGTTTGTT
GGTGTGCAATGCAGCAACCCGGGGTATGTAGAAAGAGGAGCACTCACAGA
AGTACACGGGCAAGGCCCGGACAAGCCAGCGAAGCTACTGGAAGAAGGAG
CATGTCATACGAAAAAAAGTGAAGTTGAAGGGAGCGGAGCACAGTATGAG
GAGAAGCAACCCATGATGACGCTTCAAGACATGGGCCCAACAGGCAAGGT
CATGGAGCGACCACCGGGCATAAAGGGCACCCACACTCAGACAGGAATGG
GAAGGCAGTGTGGTAACGGGAACAAGTCGGGACGGGAGGAAGGAAGCGAA
GAGGATGAAATGGACCGCAGGGAAGGCGATGGCGACGGCCGCGATGGGAT
GGCAAGCCCAAGTCGGACGAGCGGTAGCGATAGTGCGTGGCCAAGGGAGG
ATAAAGAAAGGAGACGAAGGCAACATTTTATCTCGAGAGGGTGGTGCCGA
TGGTGTGAGATGAGAAAGGTGAGAAAGGCGGGGGAAAAACCAAAGGTACC
ATTCAGATAGATGCCTCAGACTAGTGATGAAGACCAAGTAGCTGATGATG
CGGCTTTGCTGGGACCAACGCAACTTTCAGGAAAACATTTCACCAAAGAA
GGACCTCAGAGCCCAAGGCCACTGCCATGTGCTTGGACCTCTCAAAGACG
ACAGCGACGCTTTGCCTGCGTCATTTATACAGCCTCAACACTAGTCGTCA
TGATCTTGCTAGCCCTGATTCCTGACCGAACTTTTTTCCACGAACGCCGG
CAATTGTGGGGACGTCTTTGTCTGAGTGTGGCAGCGGCCCTGGTGATGTT
TGTTGGTGTGCAATGCAGCAACCCGGGGTATGTAGAAAGAGGAGCACTCA
CAGAAGTACACGGGCAAGGCCCGGACAAGCCAGCGAAGCTACTGGAAGAA
GGAGCATGTCATACGAAAAAAAGTGAAGTTGAAGGGAGCGGAGCACAGTA
TGAGGAGAAGCAACCCATGATGACGCTTCAAGACATGGGCCCAACAGGCA
AGGTCATGGAGCGACCACCGGGCATAAAGGGCACCCACACTCAGACAGGA
ATGGGAAGGCAGTGTGGTAACGGGAACAAGTCGGGACGGGAGGAAGGAAG
CGAAGAGGATGAAATGGACCGCAGGGAAGGCGATGGCGACGGCCGCGATG
GGATGGCAAGCCCAAGTCGGACGAGCGGTAGCGATAGTGCGTGGCCAAGG
GAGGATAAAGAAAGGAGACGAAGGCAACATTTTATCTCGAGAGGGTGGTG
CCGATGGTGTGAGATGAGAAAGGTGAGAAAGGCGGGGGAAAAACCAAAGG
TACCATTCAGATAGATGCCTCAGACTAGTGATGAAGACCAAGTAGCTGAT
GATGCGGCTTTGCTGGGACCAACGCAACTTTCAGGAAAACATTTCACCAA
AGAAGGACCTCAGAGCCCAAGGCCACTGCCATGTGCTTGGACCTCTCAAA
GACGACAG back to top
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