rna1678, rna1678 (mRNA) Nannochloropsis gaditana

Overview
Namerna1678
Unique Namerna1678
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length844
Alignment locationCM002457.1:1241591..1244352 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100373g8.5922.mrna
Orig protein idgnl|cribi|Naga_100373g8.5922
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1241591..1244352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100373g8gene1616Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1678rna1678-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28996.1cds1674Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1678 ID=rna1678|Name=rna1678|organism=Nannochloropsis gaditana|type=mRNA|length=844bp
GTCCTTTTTGACCTCTCCCTCCAAATTTCTCCCCCTGTTTCTTTTCAGGT
GTCCACCAAGCACATCACAACCTACAGTCTTAACGCTCTATTTGAAATGC
CAGCGCGTAATAGCCTGAGTCTCTTTTCTCGCCTTGCCCCACGCTCCAAC
CTCCCCTCTTTGCTGCACGGTACCTCTGCATTCCACAACGTCCACTGCAA
CGTGACGCGTCCCTCTCAGCCATTTTCTACCGTTGGATCACAACGTATCC
CTCATCTTTCAAAACAAGCGCGGGCAGCAGCATTAAAGGAGGACTTGGCA
GGATGGGTTGACGTTAAAGGTGGCGAGAGGGATGCAGTGGAGAAAACCTT
TATCTTCCACGATTTCAACGAGGCCTGGGGTTTCATGTCGCGTGTCGCGC
TACTGGCGGAGCAACACAACCACCACCCGGAGTGGAGCAATGTGTACAAC
AAAGTTCACGTCGTCTTGACCACTCACGACGCGGGAGGGGTCTCCCAGAA
AGACGTGACGTTGGCGAAGGCAATGGACACTATTGTGAAAAAGGGGAAGG
AGTAGGGCTCGAGAGAGGGTGGGAGGAGTGATTTGAAGAGGTTTGAGAGG
GGGAGAAAGCAGTGTGTACAAGTTTTCAACATATAGTCGCGTGAAGAATT
CAAAAATGAAAAGTTAATCAGGTAAAAATAGCAACCAAAAATGTTGAGTA
CCAATTCGAAGGGGTTTCAATCCAGCTAATGTATGTGCAGAGAGCAGCAA
AAGGATCGCCCTCCGATCAGCCTTCGACCAGAGCGAGGAAGAGAAGAGGC
CCAACACAGAGCTATATGGACTGAATATACCTTGTCTACCCTCT
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protein sequence of rna1678

>rna1678-protein ID=rna1678-protein|Name=rna1678|organism=Nannochloropsis gaditana|type=polypeptide|length=267bp
MPQTSDEDQVADDAALLGPTQLSGKHFTKEGPQSPRPLPCAWTSQRRQRR
FACVIYTASTLVVMILLALIPDRTFFHERRQLWGRLCLSVAAALVMFVGV
QCSNPGYVERGALTEVHGQGPDKPAKLLEEGACHTKKSEVEGSGAQYEEK
QPMMTLQDMGPTGKVMERPPGIKGTHTQTGMGRQCGNGNKSGREEGSEED
EMDRREGDGDGRDGMASPSRTSGSDSAWPREDKERRRRQHFISRGWCRWC
EMRKVRKAGEKPKVPFR
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mRNA from alignment at CM002457.1:1241591..1244352-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1678 ID=rna1678|Name=rna1678|organism=Nannochloropsis gaditana|type=mRNA|length=2762bp|location=Sequence derived from alignment at CM002457.1:1241591..1244352- (Nannochloropsis gaditana)
CTCGTAGCAACTCTAGGGCAGGCCAGGAAATCTTGACTGGTCAAACAGAA
AAGCTTAAAAAAAAGAACAAGTGCAAGCTTCAACTGGCGAGAAGAGCGAC
GACCCCCAATGCTCTAGCTGTCTTTCCGTAACACTCCCGTTCACTATAGT
GGTTGACAGAAAACAATACACCCCACAAAAAGCTTCGACAAAAATGCCTC
AGACTAGTGATGAAGACCAAGTAGCTGATGATGCGGCTTTGCTGGGACCA
ACGCAACTTTCAGGAAAACATTTCACCAAAGAAGGACCTCAGAGCCCAAG
GCCACTGCCATGTGCTTGGACCTCTCAAAGACGACAGGTAAGCGAGTATG
ACTTGGTCATGGTAATAGATTTGATTCTCTTTTCCCCAAATCAAGCAATC
AAACTTTAAAGGCGGATTATTTCATGTTGGGGCGTAAAAGATGAGGTATT
AACTCCTTCCGTTAATTTCACACAAGCGACGCTTTGCCTGCGTCATTTAT
ACAGCCTCAACACTAGTCGTCATGATCTTGCTAGCCCTGATTCCTGACCG
AACTTTTTTCCACGAACGCCGGCAATTGTGGGGACGTCTTTGTCTGAGTG
TGGCAGCGGCCCTGGTGATGTTTGTTGGTGTGCAATGCAGCAACCCGGGG
TATGTAGAAAGAGGAGCACTCACAGAAGTACACGGGCAAGGCCCGGACAA
GCCAGCGAAGCTACTGGAAGAAGGAGCATGTCATACGAAAAAAAGTGAAG
TTGAAGGGAGCGGAGCACAGTATGAGGAGAAGCAACCCATGATGACGCTT
CAAGACATGGGCCCAACAGGCAAGGTCATGGAGCGACCACCGGGCATAAA
GGGCACCCACACTCAGACAGGAATGGGAAGGCAGTGTGGTAACGGGAACA
AGTCGGGACGGGAGGAAGGAAGCGAAGAGGATGAAATGGACCGCAGGGAA
GGCGATGGCGACGGCCGCGATGGGATGGCAAGCCCAAGTCGGACGAGCGG
TAGCGATAGTGCGTGGCCAAGGGAGGATAAAGAAAGGAGACGAAGGCAAC
ATTTTATCTCGAGAGGGTGGTGCCGATGGTGTGAGATGAGAAAGGTGAGA
AAGGCGGGGGAAAAACCAAAGGTACCATTCAGATAGGGGTACCCCGTTTC
ACGCCTTCCCCTAACCTCGCCTGGGGCTCTGCACCACCCTCCTTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCTTGGTTCCCC
CCACTATCACGTCCCGCCAGCCCTTACGTGCTCATCACTGTCGGCACTGC
CGCCGCTGCGTTTATTCTCTGGATCACCATTGCCATTTTCTGGCGACTTG
TGTGGGAGAACGTAACCATTGTCGTTTCCTGCTGTACCTCTTCGCCCAGA
CCCTGGCGTGCATTTCGGGGCTGCGAGTGTTGGACACGGGATATATGCGG
AGGTAGGCAGAGAAAGGGGAGGGGACCGTGCGGGAGGGAGGAATGAGACG
AGCGATTGTGGCTTGGGTCATGGAATCGAAAGGGATGGAGGGCTTGTAAG
GTGGGGAAGAAGGAAAGGACGCAGAGTTCTGAAGATAGGGGAACCTCGCA
GCATTCCATCATCCTTGTCATTGTGAGAGGACGCCCGAACATGGAAATAA
TTGACTCGTTTCATCGGCCATCGGTCTCCCTTGCCCTCCTCCCTCCTTCT
CCTTCCGATGCCTTATCAAAACAAGCGCCGACATGCTCGACTATTTTCGG
GCGAACCTGCTTCCCCTTTCCCTTGCGGTGGTAGTATGGACCCTGACCGG
GGTGGCCGGTCTCCTCCTCCTCTTCCACTGCTTCCTCGCTCTCTCCTCCC
TCACCTCCCACGAATGCCTCAAAGGCCCCGAGCGGATCCCCTACCTCCGC
AGGGAAGGAGCACAGGGGAGGGGGAGCCGTGGCCACGACGTATTGGATCT
CCCTTTCTCCCGTGGGCTATGCGAGAATCTGGCTGCCTTTTGCTGCCTCC
GTGACGGTCTGTGGGCGTGTCTGCTGGGAAAGACCTGGGAGCCGACGCGA
TGGACGAAGGTAAGGCCGGGGGAGGGAGGGGAGGATTCCACGGACGTCTG
TGCATACCCCTACCGAAACGCGTATTGGTCATGTTGTTGATGAGAGTGAA
GATGACGAGGTTAAGGAGAGGTGGATGTAACGGAGAGGGGCACGGGCACA
GGATGTAAAAGGACGGAGAGTGAGAAAGTTTGCGAAGCAAAAAAAAGAGA
GGGTAGACAAGGTATATTCAGTCCATATAGCTCTGTGTTGGGCCTCTTCT
CTTCCTCGCTCTGGTCGAAGGCTGATCGGAGGGCGATCCTTTTGCTGCTC
TCTGCACATACATTAGCTGGATTGAAACCCCTTCGAATTGGTACTCAACA
TTTTTGGTTGCTATTTTTACCTGATTAACTTTTCATTTTTGAATTCTTCA
CGCGACTATATGTTGAAAACTTGTACACACTGCTTTCTCCCCCTCTCAAA
CCTCTTCAAATCACTCCTCCCACCCTCTCTCGAGCCCTACTCCTTCCCCT
TTTTCACAATAGTGTCCATTGCCTTCGCCAACGTCACGTCTTTCTGGGAG
ACCCCTCCCGCGTCGTGAGTGGTCAAGACGACGTGAACTTTGTTGTACAC
ATTGCTCCACTCCGGGTGGTGGTTGTGTTGCTCCGCCAGTAGCGCGACAC
GCGACATGAAACCCCAGGCCTAGAGGGAGAGAGGAATATTTGTCGGGAAC
AAGAGATACGGG
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Coding sequence (CDS) from alignment at CM002457.1:1241591..1244352-

>rna1678 ID=rna1678|Name=rna1678|organism=Nannochloropsis gaditana|type=CDS|length=1608bp|location=Sequence derived from alignment at CM002457.1:1241591..1244352- (Nannochloropsis gaditana)
CGACGCTTTGCCTGCGTCATTTATACAGCCTCAACACTAGTCGTCATGAT
CTTGCTAGCCCTGATTCCTGACCGAACTTTTTTCCACGAACGCCGGCAAT
TGTGGGGACGTCTTTGTCTGAGTGTGGCAGCGGCCCTGGTGATGTTTGTT
GGTGTGCAATGCAGCAACCCGGGGTATGTAGAAAGAGGAGCACTCACAGA
AGTACACGGGCAAGGCCCGGACAAGCCAGCGAAGCTACTGGAAGAAGGAG
CATGTCATACGAAAAAAAGTGAAGTTGAAGGGAGCGGAGCACAGTATGAG
GAGAAGCAACCCATGATGACGCTTCAAGACATGGGCCCAACAGGCAAGGT
CATGGAGCGACCACCGGGCATAAAGGGCACCCACACTCAGACAGGAATGG
GAAGGCAGTGTGGTAACGGGAACAAGTCGGGACGGGAGGAAGGAAGCGAA
GAGGATGAAATGGACCGCAGGGAAGGCGATGGCGACGGCCGCGATGGGAT
GGCAAGCCCAAGTCGGACGAGCGGTAGCGATAGTGCGTGGCCAAGGGAGG
ATAAAGAAAGGAGACGAAGGCAACATTTTATCTCGAGAGGGTGGTGCCGA
TGGTGTGAGATGAGAAAGGTGAGAAAGGCGGGGGAAAAACCAAAGGTACC
ATTCAGATAGATGCCTCAGACTAGTGATGAAGACCAAGTAGCTGATGATG
CGGCTTTGCTGGGACCAACGCAACTTTCAGGAAAACATTTCACCAAAGAA
GGACCTCAGAGCCCAAGGCCACTGCCATGTGCTTGGACCTCTCAAAGACG
ACAGCGACGCTTTGCCTGCGTCATTTATACAGCCTCAACACTAGTCGTCA
TGATCTTGCTAGCCCTGATTCCTGACCGAACTTTTTTCCACGAACGCCGG
CAATTGTGGGGACGTCTTTGTCTGAGTGTGGCAGCGGCCCTGGTGATGTT
TGTTGGTGTGCAATGCAGCAACCCGGGGTATGTAGAAAGAGGAGCACTCA
CAGAAGTACACGGGCAAGGCCCGGACAAGCCAGCGAAGCTACTGGAAGAA
GGAGCATGTCATACGAAAAAAAGTGAAGTTGAAGGGAGCGGAGCACAGTA
TGAGGAGAAGCAACCCATGATGACGCTTCAAGACATGGGCCCAACAGGCA
AGGTCATGGAGCGACCACCGGGCATAAAGGGCACCCACACTCAGACAGGA
ATGGGAAGGCAGTGTGGTAACGGGAACAAGTCGGGACGGGAGGAAGGAAG
CGAAGAGGATGAAATGGACCGCAGGGAAGGCGATGGCGACGGCCGCGATG
GGATGGCAAGCCCAAGTCGGACGAGCGGTAGCGATAGTGCGTGGCCAAGG
GAGGATAAAGAAAGGAGACGAAGGCAACATTTTATCTCGAGAGGGTGGTG
CCGATGGTGTGAGATGAGAAAGGTGAGAAAGGCGGGGGAAAAACCAAAGG
TACCATTCAGATAGATGCCTCAGACTAGTGATGAAGACCAAGTAGCTGAT
GATGCGGCTTTGCTGGGACCAACGCAACTTTCAGGAAAACATTTCACCAA
AGAAGGACCTCAGAGCCCAAGGCCACTGCCATGTGCTTGGACCTCTCAAA
GACGACAG
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Synonyms
Publications