rna1672, rna1672 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1672
Unique Name	rna1672
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	378
Alignment location	CM002457.1:1226238..1230746 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100585g1.10748.mrna
Orig protein id	gnl\|cribi\|Naga_100585g1.10748
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:1226238..1230746 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100585g1	gene1610	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29004.1	cds1668	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1672	rna1672-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:1226238..1230746-
coding sequence from alignment at CM002457.1:1226238..1230746-

mRNA sequence

>rna1672 ID=rna1672|Name=rna1672|organism=Nannochloropsis gaditana|type=mRNA|length=378bp
ATGCGCCTCCTCAGCCACAATGTCCTCCGCAATACCGCTAAGGGCGTGGT
GGATGGCTACCCTTTGAAGATCGAAGCTGCACAAATTGACGTCCGTGACA
CAGAGCCTGACTTGACATTCATTCGGCATCTCTTACCGACGATATCCTTC
CCAGTGCTGCGGTCGGCTGCGGAAGACTTGGGGCTAGATGCGGCAGCTTT
CCCCGCCTCCTATTCCACGACATTGGGAGAGGACGAGGCTTTCTTGAGGG
CCTTGCACAAGGCATTGTTCGACGTGCACGTGTTGGAGGGCTCGTTGGTG
TGCCCAGAGAGCGGGAGGAGGTTTTCGATCCGAGGGGGCATACCAGACAT
GATGTTGACGGATGAGGAGTTGAGTTGA

protein sequence of rna1672

>rna1672-protein ID=rna1672-protein|Name=rna1672|organism=Nannochloropsis gaditana|type=polypeptide|length=556bp
MLSSLSWRRARSPPVLGSEEGNCHPGSANKGGTGSGLGSGVGILVVGNQD
ETTTAEEKEALLREAGSEEGGKGGGGESQEDGAWPLSAALPPTPTLERPS
PPTSSLPASSLTGTNASNLTVSLGSGGTGLSRRTTSAAALLSTGLGGSNG
ASTTSSTTASPSTGHTGTAGGGTAGGGGGGGGGLDGWGLRGASEVEDGYE
EGIVVEVDSTGGLLCSSSSTEGVPRPRSFRKGAKDDFEGLSAALTMAGTP
AGSGGHASGIPSSEEGGKEGGREVPASRVFWSPHHLYLRALALVGGNGFG
RRTGGTAKDESSSSSSSSSSSSSSSSSSSSSPSSTAASSLGSSLTPPGAA
LEKEMSRGERAELLGGEGGAHASTPTSRLGHSLLFPKHHGPRPLHSYALA
RAFEKKRLAVLAAWRHRSKLSLLIMCPLLVLLLLVVTLTLVSRSGAAAAG
KAEKELASAYPGAAAALLEGGGAPEALARQKFTVIVNTYKRHDMAKDAVR
HYAACGKVRAGQTGGEEGGKGGRRVVLFCWCHGLWWGNTLLFFPRLPCPI
PSPSFT

mRNA from alignment at CM002457.1:1226238..1230746-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1672 ID=rna1672|Name=rna1672|organism=Nannochloropsis gaditana|type=mRNA|length=4509bp|location=Sequence derived from alignment at CM002457.1:1226238..1230746- (Nannochloropsis gaditana)
AATCATCGATTTTTCAGGCTCGCCATGCGTAGTTATCGCTACATGAATAA
TTTGTAGGAATTGGACCATACTAGATGGTGTGAGCAGATGGTGAAGACTG
TAGCTCCACATCGTTGATCCATCCACGTATGTTGTCATTGTACCTGGCAT
GGGAGATGGAAGATCTTAATCTCCCGCCCATCTCTCTAGCTATCTATTAA
GTCTCCAAAAGTGAGTCAAGGACTCGCCTCTTCGCTCCCACTCCGACCTC
TGCTCGCGCATGACGTCGTTCCTGGATTTGTCTTGTGAATCTACCTTTGG
ATAAATCGTGCAGTTTCTTTTGGAGCTCACTTTTTCATTTCAGGAGTGGG
ACAGGGTGTAGACAGGGAGCTTTGGGTTCCTCACCAGATCGTTGTGCCCC
TCGTGTCCATGGTCTCGGACTTGATGTGCTGTCCTGCTTTCCATCACTCA
CTGTTCTGAAAATGTTGTCCGATCGATCATGCATCCCAACCCAAACGGGC
GTACCCACACAGGAGCCTACCCTTTAAGCTGTCTCGAACATTCATTGGCA
GGTGTGAAAAGGTGCGGCGCCAGATTTGGAGCTGAAGGGCACCTAGAAAA
CCAAAACCGATACAGTTTGGGGGAAGGGAGCCACGGCCCTTTGGGTTCTG
AAGCATGCTGTCTTCCTTGTCGTGGCGCAGAGCACGTTCTCCTCCTGTGC
TAGGCTCTGAGGAGGGTAATTGCCATCCTGGGAGCGCCAACAAAGGCGGC
ACAGGCAGCGGCCTAGGCAGCGGGGTGGGCATTTTGGTCGTAGGAAACCA
GGACGAGACCACGACGGCGGAGGAGAAGGAGGCCTTACTCCGGGAAGCAG
GGTCCGAGGAGGGAGGAAAGGGAGGAGGAGGGGAAAGCCAAGAGGATGGG
GCGTGGCCCCTCTCGGCCGCCCTCCCTCCCACCCCTACCCTGGAGAGGCC
CTCCCCCCCGACCTCCTCCTTGCCCGCCTCCAGCTTGACAGGCACGAACG
CGTCCAATTTAACCGTTTCTTTGGGCTCCGGAGGAACGGGCTTGTCCAGA
AGAACGACCTCCGCGGCCGCGCTGTTGAGTACCGGCCTGGGGGGTTCCAA
TGGCGCGAGCACCACTAGCTCGACGACTGCGTCCCCTTCGACGGGCCACA
CGGGTACCGCGGGGGGTGGGACCGCGGGGGGAGGAGGAGGGGGAGGTGGG
GGATTGGACGGATGGGGTCTGAGAGGGGCGAGCGAGGTGGAGGACGGGTA
CGAAGAGGGCATTGTGGTGGAGGTAGACAGCACGGGGGGCTTGTTGTGCA
GCAGCAGCAGCACGGAAGGCGTGCCTCGGCCCCGCTCGTTCCGGAAGGGT
GCCAAGGACGATTTTGAAGGGCTCTCGGCGGCCTTGACGATGGCGGGGAC
CCCGGCCGGGTCTGGGGGCCACGCGAGCGGGATTCCGTCGTCGGAGGAGG
GAGGGAAGGAGGGCGGGAGGGAGGTGCCGGCGTCCCGTGTGTTCTGGTCC
CCTCACCATTTGTACTTGCGCGCGCTTGCCTTGGTGGGGGGGAACGGGTT
CGGACGGCGAACAGGAGGCACCGCCAAGGACGAGAGCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCCCCG
TCCTCCACCGCTGCTTCCTCCCTCGGCTCGTCCTTGACCCCGCCGGGGGC
GGCGCTGGAGAAGGAAATGTCCCGGGGGGAGCGCGCGGAGCTACTAGGCG
GGGAAGGAGGGGCTCATGCGAGCACTCCCACGAGCCGACTCGGGCATTCC
CTCCTCTTCCCCAAGCACCACGGTCCCCGACCGTTACATTCGTACGCCCT
GGCCCGGGCTTTTGAAAAGAAACGGCTGGCGGTGTTGGCCGCGTGGCGGC
ATCGTTCGAAACTCTCCCTTTTGATCATGTGTCCCCTCCTCGTCCTCCTC
CTCCTGGTCGTCACCTTAACCTTGGTATCTAGGAGCGGTGCTGCCGCGGC
GGGAAAAGCGGAGAAAGAACTGGCCTCGGCCTACCCTGGGGCCGCCGCCG
CCTTGTTGGAAGGGGGAGGGGCGCCGGAGGCATTGGCGCGGCAAAAGTTC
ACGGTGATTGTCAATACTTACAAGCGCCACGACATGGCGAAGGACGCCGT
CCGGCATTACGCCGCCTGCGGGAAGGTGCGGGCCGGGCAGACTGGGGGGG
AGGAGGGAGGGAAGGGGGGGAGGCGGGTCGTGTTGTTTTGTTGGTGTCAT
GGCTTGTGGTGGGGCAATACCCTCCTTTTTTTCCCCCGTCTCCCGTGCCC
CATCCCCTCTCCCTCTTTCACCTGACTACACGCTGATCAGCCTTTGCTTC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCTTGCTCAGGTGGA
TGCGATCCGAGTCGTGTGGTCTGAGAACGAGACTGCGCCTCCCTCCCCGC
AGGAGGAGAAGGACAGGGCGTGGTTTAGTGACCATAAACCCGTCTACTAC
GATACGTATGCCACCACGAGTTTGAATAACCGTTTCGTGCCCCCGGCGGG
CAAAAAAGGCCGGGACAACGGTAGGTGAACCTTTGCGATGCAGAGTCTGG
GCGATGGGTGCCATGAATTTTGGAAGGAAGGTCTTGTGTGAGAGTTGTTA
TCGTGCATGATGGAGGATGTTTGGGATGGCTTCTCGGGCTGACGGCTTTC
GTTGCAGGGTGTCTTCTATCCATGCCCTCCTTCCCGTCTCTATGCTTTTG
TATCGTTACCTTCTGCGTAGCGCTTGACTTCTACTCGTTCGAGGTAAACT
TAATTTCCTTCCTAACACCACACTTATCTTTATTTTCCCTCCCCCCCCTC
CTGTCCCCTCCCTCCTAACCCATCCTCAGGCTTGGCCACCGACGCCGTCT
TCGCCGTGGACGACGACATCCGGGTACCCTGCTCGGACCTGGAGTTTGCC
TTTGGCGTCTGGAAGGCCGCCGATCAATCGTTGGTGGGCTTCATGCCACG
GGTCCACACCCTGAATCCCTTGGCGTTACGGGCGGTGGCGGAGAGGGAAG
GGCTCAGGGAAAAACGCCGGGTGGAGAGGCGACGACGGAACGGCCGGAAA
AAGAAAATAAGAGGGGGGGAGATGGAAGAGGCAGGGACGGGGGAGGAGGA
GGAGGGGATGGAGATGGACAGCGAAGACGTTGGGGCGATGCCCCCTCTCT
TTCGATACAATGGGTGGTGGAAAGTGTGGTGGGAAGGCGAATATTCCCTG
ATTCTGACCAAGGCAGCGTTTTTGCACCGGGACTTCCTCCGGGCGTACAC
GGAAGAAATGCCGGCGGCGATTCGGAATTACGTGGACGAGAACCGGAATT
GCGAGGACATTGCCATGCAATTCTTAGCTGCGAATATGACGGGAAAACCA
CCCATTTTTGTCCGAGGAAGACTGACGGATTTGGGCGTCTTCAATGGTAG
GGCATTGGAGAAGTCGGAGGTGCATGCAGGACTAGGGGCTCCCTGTCTCT
GGATGGTGTGTGGGTGGGCGTCTCCCTGAGAAGTGGACCGTATGCCCCCC
TTCATTATCTTGCTTCGCTCCAAAATGTGTTTGTCGGTCGTGGTGCCTAT
CATCCACTTGTCGTGTCCAGAAGCGTTGCGCTTGTTCACGCCCCCGGGAT
GCATCTAGAGAGGGCTGGCGGTTGCCCGGCGTCGATGTGTGGGCCGGTTG
CTCACCTGCGTCTCTCCCTCCCTTCCTCCTTCCCTTCCTCCTTCCCGCCC
TCCTTGCAGGCATCTCCACCAAGAGTTGGACGCAGCTCGGGCACATGAAG
AGCCGAGGGCAGTGTCTGAACGACTTTGTCGGTCTGTACGGCGGTCGCAT
GCCTTTGGTTATGGGAAGTGCGGTGGCTGGTCCGACGGGGAGCCTTCTCT
TTGGTCGGCCCTCCACCGTTTTCGATTATTTCTCGAGCGACGTCCTGCTC
GGTTCAGGGGGAGGGGGCGGGGGAGGCGGGGAGGGAGAGCGGAGGCGGCG
GGGACGGGCGTTACACCTGATACCCTTACTGGCGGTCTTCCTGTTGATCG
TGGTGAAGCTCACCTTTTGGTAGTCGAGAAGGACGGAGGGACAGGGAGGG
TGGAAAGGAAGAAGCGGGGACGCAACCTTCGAGAACCCACAGCGGGAGGC
GAGGCTAGGGCGTGAGAGGCTCTTGGAGAAGGAGGCAGGCCGTGGGACGG
CCGAGCGGAGCGTGCACTTTTTGAGACGATGGAACCAGGGAGGACGTGCC
CGGTCCCGGGAATACTTTCTAGAACTTTCTCTGACGCGTCAACGTCATGG
GACGCGTAAAGTAAAAATGGATGGCTAGGAGTCTCCCACACCTCCTGTGG
ACCGGTGGTCGCGGAAGACTGGGAAGACGTGTGAGGTTTAGCGGGCATAG
GTGGGAGGGACATTAGTGTTTACGTACAGAAAGCAGCAGCAAAAAGGTTT
TAAGGAGAAGGCAGAGCATCCAAATAAAGCGAAATCAAGATCATTTCATA
AGAAAAGGT

Coding sequence (CDS) from alignment at CM002457.1:1226238..1230746-

>rna1672 ID=rna1672|Name=rna1672|organism=Nannochloropsis gaditana|type=CDS|length=1671bp|location=Sequence derived from alignment at CM002457.1:1226238..1230746- (Nannochloropsis gaditana)
ATGCTGTCTTCCTTGTCGTGGCGCAGAGCACGTTCTCCTCCTGTGCTAGG
CTCTGAGGAGGGTAATTGCCATCCTGGGAGCGCCAACAAAGGCGGCACAG
GCAGCGGCCTAGGCAGCGGGGTGGGCATTTTGGTCGTAGGAAACCAGGAC
GAGACCACGACGGCGGAGGAGAAGGAGGCCTTACTCCGGGAAGCAGGGTC
CGAGGAGGGAGGAAAGGGAGGAGGAGGGGAAAGCCAAGAGGATGGGGCGT
GGCCCCTCTCGGCCGCCCTCCCTCCCACCCCTACCCTGGAGAGGCCCTCC
CCCCCGACCTCCTCCTTGCCCGCCTCCAGCTTGACAGGCACGAACGCGTC
CAATTTAACCGTTTCTTTGGGCTCCGGAGGAACGGGCTTGTCCAGAAGAA
CGACCTCCGCGGCCGCGCTGTTGAGTACCGGCCTGGGGGGTTCCAATGGC
GCGAGCACCACTAGCTCGACGACTGCGTCCCCTTCGACGGGCCACACGGG
TACCGCGGGGGGTGGGACCGCGGGGGGAGGAGGAGGGGGAGGTGGGGGAT
TGGACGGATGGGGTCTGAGAGGGGCGAGCGAGGTGGAGGACGGGTACGAA
GAGGGCATTGTGGTGGAGGTAGACAGCACGGGGGGCTTGTTGTGCAGCAG
CAGCAGCACGGAAGGCGTGCCTCGGCCCCGCTCGTTCCGGAAGGGTGCCA
AGGACGATTTTGAAGGGCTCTCGGCGGCCTTGACGATGGCGGGGACCCCG
GCCGGGTCTGGGGGCCACGCGAGCGGGATTCCGTCGTCGGAGGAGGGAGG
GAAGGAGGGCGGGAGGGAGGTGCCGGCGTCCCGTGTGTTCTGGTCCCCTC
ACCATTTGTACTTGCGCGCGCTTGCCTTGGTGGGGGGGAACGGGTTCGGA
CGGCGAACAGGAGGCACCGCCAAGGACGAGAGCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCCCCGTCCT
CCACCGCTGCTTCCTCCCTCGGCTCGTCCTTGACCCCGCCGGGGGCGGCG
CTGGAGAAGGAAATGTCCCGGGGGGAGCGCGCGGAGCTACTAGGCGGGGA
AGGAGGGGCTCATGCGAGCACTCCCACGAGCCGACTCGGGCATTCCCTCC
TCTTCCCCAAGCACCACGGTCCCCGACCGTTACATTCGTACGCCCTGGCC
CGGGCTTTTGAAAAGAAACGGCTGGCGGTGTTGGCCGCGTGGCGGCATCG
TTCGAAACTCTCCCTTTTGATCATGTGTCCCCTCCTCGTCCTCCTCCTCC
TGGTCGTCACCTTAACCTTGGTATCTAGGAGCGGTGCTGCCGCGGCGGGA
AAAGCGGAGAAAGAACTGGCCTCGGCCTACCCTGGGGCCGCCGCCGCCTT
GTTGGAAGGGGGAGGGGCGCCGGAGGCATTGGCGCGGCAAAAGTTCACGG
TGATTGTCAATACTTACAAGCGCCACGACATGGCGAAGGACGCCGTCCGG
CATTACGCCGCCTGCGGGAAGGTGCGGGCCGGGCAGACTGGGGGGGAGGA
GGGAGGGAAGGGGGGGAGGCGGGTCGTGTTGTTTTGTTGGTGTCATGGCT
TGTGGTGGGGCAATACCCTCCTTTTTTTCCCCCGTCTCCCGTGCCCCATC
CCCTCTCCCTCTTTCACCTGA

Synonyms

Publications