rna1668, rna1668 (mRNA) Nannochloropsis gaditana

Overview
Namerna1668
Unique Namerna1668
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length411
Alignment locationCM002457.1:1212648..1213988 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100575g2.377.mrna
Orig protein idgnl|cribi|Naga_100575g2.377
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1212648..1213988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100575g2gene1606Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29009.1cds1664Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1668rna1668-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1668 ID=rna1668|Name=rna1668|organism=Nannochloropsis gaditana|type=mRNA|length=411bp
ATGCCTGCTCTCGCGCTTGGGCGTGGGAGCGTGCAGGCGGAAGAGATCAG
TCTCCAAGCCGATTTTCACGCCATTCTTGCTGAATATGTGCGTGAGCATC
GACTGTACGCCTTCCATCCTGATTTCGAGCTCCTGCAACTCCGCCGGGAG
GACTTGGATTATCCCAGTATGGGGCCCTTTCGGTCATCGCCTCAGGCATT
GATACCCGGAGAAGTGAAGGAAATGGAAGACGGGGAGCTCGAGAGCGAGG
GCTTGGTCGAGAAGAGCATGCTTAAGGTGCTGGAAGACTTTCTCAACCAT
CGCAAGGAGTTCCGGCGCCTGGTGTTGCTGGTGACCTGGCTCGAGCTGCT
GCGGGAGAGGGACCTGTGGATGCTGCGTGACGAGATCGATGGGCTGGTAG
GAAGGGAGTGA
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protein sequence of rna1668

>rna1668-protein ID=rna1668-protein|Name=rna1668|organism=Nannochloropsis gaditana|type=polypeptide|length=231bp
MPALWSVLAGISLPGRVSFLGRGEVFSRPRCFSSRSERGPRQASASTKAG
EVAERTTSLRISDGVILHNALPAACIGASVGGAAAVTPEEATAEEGGEVE
DEEDEEEEEKQGSHDSLSIPSFSGAALDPGAFPSVATGAGRDDGASGTVP
PPPLPSASPCLRRFLVTQAVDDADERWSSEAVRLRAEISYKRLKSGSSLS
SSHCSPAVPPDRAAPAALAGPVACIFVHPRT
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mRNA from alignment at CM002457.1:1212648..1213988-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1668 ID=rna1668|Name=rna1668|organism=Nannochloropsis gaditana|type=mRNA|length=1341bp|location=Sequence derived from alignment at CM002457.1:1212648..1213988- (Nannochloropsis gaditana)
GGTGGTGCGGGTGGGCCGGAAGTGGAAGGGATGGAGGGAGGGGGGGCCGG
GCGCCGGGCGGGGCGAGTGGCAATGAGGGAGAGGAGCTCGTCAAAATCAA
AGATACGGATGACGCCATGCGTGCTCCCCACGGCCAGAAGGGCGCCCATG
GGGTCGAATTCCATCACAGAGGGGGGGTCCGCGACACTTGATGCGGTCCA
TCCCCCTTCCAAGCCAACCGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGTGGAGGAGAAAGGTCGGAGCCGCCGGGTCAAGAGATGGGCG
GCAGCGCGTCGTGTTTGTGCTCCACAGGTGCCAGTCTGGTAGTGCGTGAA
AAAATGGCGCCAATGACGCAAAGCGCCTGGAGGTTTGTGCGGCGCAGGGC
CCGGGAGGGGGGGGCAGCGGAAGGGAGGGCGGGCGGGGCAGAGATATGAG
AGAATGCCAGCTTTGTGGTCCGTGTTGGCCGGTATTTCCCTTCCCGGCCG
CGTCTCGTTCCTGGGAAGAGGAGAAGTATTCTCTCGCCCCCGGTGTTTCT
CGTCCCGGTCGGAAAGAGGGCCCCGCCAGGCGTCGGCATCCACAAAGGCG
GGAGAGGTGGCGGAGAGAACAACGTCATTGCGAATATCGGACGGTGTTAT
ACTACATAATGCGCTCCCTGCTGCCTGTATCGGTGCTTCCGTTGGCGGTG
CGGCGGCCGTGACGCCGGAAGAAGCCACGGCAGAGGAGGGAGGAGAGGTG
GAGGACGAGGAGGACGAGGAGGAGGAAGAAAAACAAGGGTCCCATGATAG
TCTTTCAATTCCCTCATTTTCTGGTGCTGCTCTTGATCCTGGTGCTTTTC
CCAGCGTGGCAACAGGGGCAGGCCGTGACGACGGTGCCTCCGGGACTGTT
CCCCCCCCCCCCCTGCCCTCGGCTTCTCCCTGTCTGCGCCGCTTTTTGGT
GACGCAAGCAGTGGATGACGCTGATGAGAGGTGGAGCTCCGAGGCTGTAA
GGTTGCGGGCGGAAATCTCGTACAAACGGCTCAAGAGTGGATCCTCCCTA
TCGTCCTCCCATTGCTCCCCCGCGGTTCCTCCTGATAGAGCTGCTCCCGC
TGCGCTGGCCGGACCGGTGGCTTGCATTTTTGTGCATCCACGCACTTGAT
TTGTACGAAGGATGCCCTTGTGACTTTCTTGGCCGGCAAATTGGCACAGG
GGAGGAGAAATTGGCTGAAGCTGAACAGGGGACGAGGCAGGGGAAGGTGA
AGGAGAGACCGTGTCTACGACATTGTGAAAACGCACGCTTCCATTCCCTT
TGCCCAGCTGCGAAAGTTTCTTTTTTGAGCGTAAACTGGAA
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Coding sequence (CDS) from alignment at CM002457.1:1212648..1213988-

>rna1668 ID=rna1668|Name=rna1668|organism=Nannochloropsis gaditana|type=CDS|length=696bp|location=Sequence derived from alignment at CM002457.1:1212648..1213988- (Nannochloropsis gaditana)
ATGCCAGCTTTGTGGTCCGTGTTGGCCGGTATTTCCCTTCCCGGCCGCGT
CTCGTTCCTGGGAAGAGGAGAAGTATTCTCTCGCCCCCGGTGTTTCTCGT
CCCGGTCGGAAAGAGGGCCCCGCCAGGCGTCGGCATCCACAAAGGCGGGA
GAGGTGGCGGAGAGAACAACGTCATTGCGAATATCGGACGGTGTTATACT
ACATAATGCGCTCCCTGCTGCCTGTATCGGTGCTTCCGTTGGCGGTGCGG
CGGCCGTGACGCCGGAAGAAGCCACGGCAGAGGAGGGAGGAGAGGTGGAG
GACGAGGAGGACGAGGAGGAGGAAGAAAAACAAGGGTCCCATGATAGTCT
TTCAATTCCCTCATTTTCTGGTGCTGCTCTTGATCCTGGTGCTTTTCCCA
GCGTGGCAACAGGGGCAGGCCGTGACGACGGTGCCTCCGGGACTGTTCCC
CCCCCCCCCCTGCCCTCGGCTTCTCCCTGTCTGCGCCGCTTTTTGGTGAC
GCAAGCAGTGGATGACGCTGATGAGAGGTGGAGCTCCGAGGCTGTAAGGT
TGCGGGCGGAAATCTCGTACAAACGGCTCAAGAGTGGATCCTCCCTATCG
TCCTCCCATTGCTCCCCCGCGGTTCCTCCTGATAGAGCTGCTCCCGCTGC
GCTGGCCGGACCGGTGGCTTGCATTTTTGTGCATCCACGCACTTGA
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Synonyms
Publications