rna1667, rna1667 (mRNA) Nannochloropsis gaditana

Overview
Namerna1667
Unique Namerna1667
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length278
Alignment locationCM002457.1:1211243..1212087 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100575g1.376.mrna
Orig protein idgnl|cribi|Naga_100575g1.376
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1211243..1212087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100575g1gene1605Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1667rna1667-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29008.1cds1663Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1667 ID=rna1667|Name=rna1667|organism=Nannochloropsis gaditana|type=mRNA|length=278bp
GCGGCTACGACATGTGGCCCTCCACGTGCCAGAGGGAAGGAAGGGCGTGT
CTGGACCCAGACTACCCTCAGCACAGTCGCCGCCCTCTGATGCCCGTGGA
CGAACGTCAAGATTTCCTCCTTCTGGAACGGATTTGGCGCTTTCTCCGTG
CGGGTCGATTGGATGACGCCATCGACCTCTGCCTCCGTTGCGGCCAGTAT
TGGCGAGCCGCCTCCATCAGTGGGGGCGACCCCTGGGAGGTGTTTGTGCC
TGAAGAAGAAAAAAGGACAAAAGCCTAA
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protein sequence of rna1667

>rna1667-protein ID=rna1667-protein|Name=rna1667|organism=Nannochloropsis gaditana|type=polypeptide|length=136bp
MPALALGRGSVQAEEISLQADFHAILAEYVREHRLYAFHPDFELLQLRRE
DLDYPSMGPFRSSPQALIPGEVKEMEDGELESEGLVEKSMLKVLEDFLNH
RKEFRRLVLLVTWLELLRERDLWMLRDEIDGLVGRE
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mRNA from alignment at CM002457.1:1211243..1212087-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1667 ID=rna1667|Name=rna1667|organism=Nannochloropsis gaditana|type=mRNA|length=845bp|location=Sequence derived from alignment at CM002457.1:1211243..1212087- (Nannochloropsis gaditana)
ATGCCTGCTCTCGCGCTTGGGCGTGGGAGCGTGCAGGCGGAAGAGATCAG
TCTCCAAGCCGATTTTCACGCCATTCTTGCTGAATATGTGCGTGAGCATC
GACTGTACGCCTTCCATCCTGATTTCGAGGTGCGCTTCGCGCCCGAAGAG
AAATTTCTAAAGGCAGCTGAGGACCGCTTGCGGGAAGCAGCACAAAGCGG
GAGGGAAAATGTGGGGAAAAAGGGCGTACGCGGGGAGTCAGGAAAGGAGC
GGCACGAGGAGCTAGCTACGGCCAGAAAGTGGGAGGTGGAGGCGGACTCA
TGGATGGTAAGGAAAGGTTGGCGAAGTGCCTGGGAGGTAAACCGACGTCA
CAAATTCACGTACTCACGTCGCATTATCTGAATCGTCTGTGCTTCTACTT
TCCTGTCTCAGCTCCTGCAACTCCGCCGGGAGGACTTGGATTATCCCAGT
ATGGGGCCCTTTCGGTCATCGCCTCAGGCATTGATACCCGGAGAAGTGAA
GGAAATGGAAGACGGGGAGCTCGAGAGCGAGGGCTTGGTCGAGAAGAGCA
TGCTTAAGGTGGGTGAGAAGGGGGGGCGGGAGGAAGAGCGCGAGATGCAG
GGATAGGGTATCCTCCTCCCGCGGTCAATCCTGACCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCTCCCCCCTTTTTTCTTTTCCAACCCCCAC
ACTCTTCCAGGTGCTGGAAGACTTTCTCAACCATCGCAAGGAGTTCCGGC
GCCTGGTGTTGCTGGTGACCTGGCTCGAGCTGCTGCGGGAGAGGGACCTG
TGGATGCTGCGTGACGAGATCGATGGGCTGGTAGGAAGGGAGTGA
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Coding sequence (CDS) from alignment at CM002457.1:1211243..1212087-

>rna1667 ID=rna1667|Name=rna1667|organism=Nannochloropsis gaditana|type=CDS|length=1233bp|location=Sequence derived from alignment at CM002457.1:1211243..1212087- (Nannochloropsis gaditana)
GTGCTGGAAGACTTTCTCAACCATCGCAAGGAGTTCCGGCGCCTGGTGTT
GCTGGTGACCTGGCTCGAGCTGCTGCGGGAGAGGGACCTGTGGATGCTGC
GTGACGAGATCGATGGGCTGGTAGGAAGGGAGTGACTCCTGCAACTCCGC
CGGGAGGACTTGGATTATCCCAGTATGGGGCCCTTTCGGTCATCGCCTCA
GGCATTGATACCCGGAGAAGTGAAGGAAATGGAAGACGGGGAGCTCGAGA
GCGAGGGCTTGGTCGAGAAGAGCATGCTTAAGATGCCTGCTCTCGCGCTT
GGGCGTGGGAGCGTGCAGGCGGAAGAGATCAGTCTCCAAGCCGATTTTCA
CGCCATTCTTGCTGAATATGTGCGTGAGCATCGACTGTACGCCTTCCATC
CTGATTTCGAGGTGCTGGAAGACTTTCTCAACCATCGCAAGGAGTTCCGG
CGCCTGGTGTTGCTGGTGACCTGGCTCGAGCTGCTGCGGGAGAGGGACCT
GTGGATGCTGCGTGACGAGATCGATGGGCTGGTAGGAAGGGAGTGACTCC
TGCAACTCCGCCGGGAGGACTTGGATTATCCCAGTATGGGGCCCTTTCGG
TCATCGCCTCAGGCATTGATACCCGGAGAAGTGAAGGAAATGGAAGACGG
GGAGCTCGAGAGCGAGGGCTTGGTCGAGAAGAGCATGCTTAAGATGCCTG
CTCTCGCGCTTGGGCGTGGGAGCGTGCAGGCGGAAGAGATCAGTCTCCAA
GCCGATTTTCACGCCATTCTTGCTGAATATGTGCGTGAGCATCGACTGTA
CGCCTTCCATCCTGATTTCGAGGTGCTGGAAGACTTTCTCAACCATCGCA
AGGAGTTCCGGCGCCTGGTGTTGCTGGTGACCTGGCTCGAGCTGCTGCGG
GAGAGGGACCTGTGGATGCTGCGTGACGAGATCGATGGGCTGGTAGGAAG
GGAGTGACTCCTGCAACTCCGCCGGGAGGACTTGGATTATCCCAGTATGG
GGCCCTTTCGGTCATCGCCTCAGGCATTGATACCCGGAGAAGTGAAGGAA
ATGGAAGACGGGGAGCTCGAGAGCGAGGGCTTGGTCGAGAAGAGCATGCT
TAAGATGCCTGCTCTCGCGCTTGGGCGTGGGAGCGTGCAGGCGGAAGAGA
TCAGTCTCCAAGCCGATTTTCACGCCATTCTTGCTGAATATGTGCGTGAG
CATCGACTGTACGCCTTCCATCCTGATTTCGAG
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Synonyms
Publications