rna1665, rna1665 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1665
Unique Name	rna1665
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2148
Alignment location	CM002457.1:1208373..1209045 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100780g1.7470.mrna
Orig protein id	gnl\|cribi\|Naga_100780g1.7470
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:1208373..1209045 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100780g1	gene1603	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29013.1	cds1661	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1665	rna1665-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:1208373..1209045-
coding sequence from alignment at CM002457.1:1208373..1209045-

mRNA sequence

>rna1665 ID=rna1665|Name=rna1665|organism=Nannochloropsis gaditana|type=mRNA|length=2148bp
AAAGAAAAATCCTGCATACAGGACCCGTCTTTATTCCTAACAAGGCGACG
CAATGCCACGACGCGTCCCTCTTCCATGGCCCTGGCACCCATTGTTGCGT
TATGTCAGTGCAGGGGCTGCCTCAACTTTTTTAGCCGCTTCCTCCAGCAG
ACGGATTGGTATGGCTACCACCACCACCACCACCACCGTACTCAGCATAT
TCTACTTGATCCTTAGCCACTCTCATTCTTCTACGGCTACACTCGTCGAT
AAACGTGCCGGACGGGGAAGCACAAGCGGGAGTCGTTGCAGCAGTAGCAA
GAGGGCTTTCATCCAACCCTCCACGCCAGGCCGCCACCTCCCCAAGGACC
ATACCGGGCTCTACGTTGGTCACGAATACATGTCACACCTATCGTGGCCC
CTTGGAACAAAAACGCGTCCCTGTGGCGGGGTCAGACGATGCACCAGCAT
GGGCACCCCGTCTCAAGGGGAGGACCTGACGGCCAATACCGGCACCTTTG
GAGAGAACATCCCTTTCGCCGCACTCGGCCTCTCCCCATGGCTCACTGCG
GCCCTGTCCGGGGCCGGGAAAGCTACGTCCACGCACATCCAAGCATTGGC
CCTTCCCACCATCCTGGCTGGTGAGAACGTGGTAATAGGGAGCGAGACCG
GGGCCGGCAAGACCTTGGCCTACTTACTCCCAGTCATGGAACTCGCCCAC
CGCGCGCACGCTGCACGGACAGCCATGAAAGAGAAAGCCCTCGCGTACTA
CCAAGAGCGGAGGGGGGCCCTCAAGGAGGGAGCGGGTGGGAGGGAAAGGG
TGGGGGAGTACTCCTCCCTTGCCGAAGACTACCCTTGGGAGGCTCCCTTC
GCAATTGTGCTGGTGCCCAACGGGCAATTGAGCGAGCAAGTTCTCAGGAT
GGCGGGGGAGGTGCTGGGACAGGGCGAAGGGGAAGAGAACGTGAGGGTGG
AGGCCCTGAAAGGCAGCGTGGACGTGTGGCCGTACCGTGTCGGGAGCCGA
GCTGCCCCCGACGTCCTGGTATGCACGCCCGCCACCCTCTCTTCGTTCGA
CCGGGAGGTCAATCTCTTTGGGGAGGTGAATATTCTGGTGGTGGACGAGG
CGGACATGCTCCTGGAGGGGGACTACGGGCGCCATTTGGAGAGGATCTTG
GTCGCATTCAAGAGAGCCGACAAACTCCACACTGCCCGTTCCGAGCCGCT
CACTCAATACGTGCTGGCGGCGGCCACGCTTCCCTCCTACGGCCTGAAAT
CGGTGGAAGAACTTGTGAAGAAACGCTTTCCTTCTGCCGTCCGGGTCCAC
ACGGACTTGATGCACAAGCACCATCCCCAGCTGACACAAGTCTTCGTGGA
GGCGCCCGAGGATTTAGAGGGGAAGATCGCCATGTTGCTCCAAGTGCTGG
AAAAGCTCCGGACCAAGGGGGAGGAGGCGAGACGGGCGGAGGGAGGGAAG
GAGGGAGGGAAGGAGGGGGAGGGGGAGGCACAGGCAACCATCTTGCCCAA
GACGATGGTGTTTCTCAACACAGCCACCGCCGCAGCACGGACGCAAATCG
CGGTGCAGGCGGCAGGCTTCCCCAGCGTGGCCTTCCACAAGGAGGTCCGG
CGGGAGGAAAGGGAGGCAAATTTGCAGCGTTTTCGATCGAACCAGGTGCC
CTTGTTGGTCTGCACGGATCTGGCCGCGCGGGGCCTAGACATTCCGGACG
TCCGTCAGGTGGTTCAGGTGGAGTTCGCCCCCAACGTGGTGCAGCACTTG
CACCGGATCGGGCGGGCGGTGCGGGCGGGGCGGGAAGGGCGAGCCGTGAA
TTTCTACGATCTGGGTGCTCATGACCTGGTGGAAAGCCTGCAACTGGCCC
AAGCTGACACTCTGGAACGTTCATTTTCACGGCAGCGGGGCTTTCGCAAG
AAGATCAAGAAATACGGGCGGGATTATTATCGGCTCCCCGGCGGGGCCTA
TCGGGGGCCAGGGTGGGAGGAGGAGGCGAAGGGGAGGGGACGCAAAGGGG
AGGGCGGGGGGGAGGAGGGTCGAGGAGGGAAAGAGGCTGTGGAAAGGTGA
GGCATGGGGAGCCTTTTTCCTCTCTTTCCTCCTTTCAGAAAACTTCAGCA
AAAAGCACGCTTTATCCTGCCTTAATCGCGAATATCCAGTCTCAGTCC

protein sequence of rna1665

>rna1665-protein ID=rna1665-protein|Name=rna1665|organism=Nannochloropsis gaditana|type=polypeptide|length=106bp
MWSLQIGSTVADPKLRLYHYFPRGKKAGPGSSSLLSDTFTLADLMECLSV
SGKGLLRLLQRTDWAELARRANMEAPWEEEGEEEEGEEEGCGEEEEEGVW
DGEFHR

mRNA from alignment at CM002457.1:1208373..1209045-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1665 ID=rna1665|Name=rna1665|organism=Nannochloropsis gaditana|type=mRNA|length=673bp|location=Sequence derived from alignment at CM002457.1:1208373..1209045- (Nannochloropsis gaditana)
CCCCTTCCCTCCGTCTATGTCCTTAGATTCTGTACGACACCGGTCGGTGC
TTGGAGACTGCATTTGTGTCCCCAAAGGCCCTGAGTCAGGCCGTCAATTC
CCTCGCGGAGGCCGCCCCACCCTCCGCCCCTCCCTCCGCCGGCACCTCCC
TCCTCCAGACCGACGCCAACGCCGCGCGTTTTCGGGACCTGGCCGCCAAG
TGCTTCATGTGGAGCCTTCAAATTGGGTCGACCGTGGCTGACCCGAAATT
GCGGCTGTATCACTACTTCCCAAGAGGAAAAAAGGCGGGCCCGGGGAGCA
GCTCTTTGTTGTCCGACACTTTTACGTTGGCGGATTTGATGGAGTGTTTG
AGTGTTTCCGGGAAGGGGCTGCTTCGGCTTTTGCAACGGACAGATTGGGC
AGAGCTGGCGCGACGGGCGAACATGGAGGCACCCTGGGAGGAGGAGGGGG
AAGAAGAGGAGGGGGAGGAGGAGGGGTGTGGGGAGGAGGAGGAGGAGGGA
GTGTGGGATGGGGAGTTCCATCGATGATAGAAAGAAAGAGGGGGACGCAA
GGGAAGGAGCTGGAAGGAGTAGGGGAAGGGGATGGAACGCCAGTGCGATG
ACCCAAATAGCCTTCATCGCAACGCTTCAAAGGAAAGGAAAGCAAATTAA
GCCACCCGCGTAATTTTCCTTAT

Coding sequence (CDS) from alignment at CM002457.1:1208373..1209045-

>rna1665 ID=rna1665|Name=rna1665|organism=Nannochloropsis gaditana|type=CDS|length=321bp|location=Sequence derived from alignment at CM002457.1:1208373..1209045- (Nannochloropsis gaditana)
ATGTGGAGCCTTCAAATTGGGTCGACCGTGGCTGACCCGAAATTGCGGCT
GTATCACTACTTCCCAAGAGGAAAAAAGGCGGGCCCGGGGAGCAGCTCTT
TGTTGTCCGACACTTTTACGTTGGCGGATTTGATGGAGTGTTTGAGTGTT
TCCGGGAAGGGGCTGCTTCGGCTTTTGCAACGGACAGATTGGGCAGAGCT
GGCGCGACGGGCGAACATGGAGGCACCCTGGGAGGAGGAGGGGGAAGAAG
AGGAGGGGGAGGAGGAGGGGTGTGGGGAGGAGGAGGAGGAGGGAGTGTGG
GATGGGGAGTTCCATCGATGA

Synonyms

Publications