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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100013g53.9758.mrna |
| Orig protein id | gnl|cribi|Naga_100013g53.9758 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:434429..436338 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna166 ID=rna166|Name=rna166|organism=Nannochloropsis gaditana|type=mRNA|length=1376bp
ATGCACCTCATCTCGGTCTTCTCGTTTCCGTCACAGGCGCTTCCTTCTTG
CCGAAGTGTTGTCAAGATACTTCAGCCCAAAGAGCGACTAGCTCTTGCAC
GATTTACAAGAGCCCCATTTCGGGTGAAAATGTACTTGTCCTACGAGCGA
TCAAGAAGAAATGGTGGTAAGCTGCTCGCAGTCTACCGATCTTTCGTCCT
GCTTGTTATCTTCCTCTGCCATCTATCATCCGCCTTCCAGCCCTCTTCTC
CCGTGCAGTACTGGGGGAGGTCGAGGGGAGACATTCTGTGTAAAAAAGGA
TCGAGTAGCGGCAGTGGACCACCAGCATCAAAGGGATTTGGATTTGGTGC
TAAAAAGGAAGCAAAGGGAGACAAATTCAAGTACACCGGCCGTCTAAAGC
CTGGTGTATTGAGTCCTCCCCGAGATGTCCCAGCAGACATATTGCGGCCC
GACTATGCTCTTGATGGTATGCCGAAAGCTCGCGATCCGCCGTTGCCTTG
GATGATCGAAGTGAAATCTCCGGAGGATATCGCCGCTATGCGTGCCTCTG
GATTGGTCGCACGTGAAGTACTGGATGCTGTCGGTCGACAGATCAAGGTG
GGGATGACGACTGACGAGATCGATAGCATCGCGCACGGGGAAACGATAAA
GCGGGGCGCTTACCCCTCACCGCTAAACTATCAAGGATTTCCTAAGTCGT
GCTGCACAAGCTTGAACGAAGTCGTCTGTCACGGCATTCCCGACGTGTCG
ACCAAATTGCAGGATGGTGATATAGTTAACGTGGATGTGACCGTCTATTA
TAAGGGGTATCACGGGGATTGCTCGGAAACCTTTTGTGTTGGGAACGTCG
ATGAGGCAGGGAAAAGGCTTGTCAAAGTTACATACGACGCGTGGCAAAAA
GCAATTGAGTTCTGCAAGCCTGGGCGTCCTTACAAAGACATCGGTGCAAT
TATCGAAGAGTATGTAACCAAGGAGGGCTTCACCACCGTGCGAGAGTTTT
GCGGGCACGGTGTGGGAAAGGTTTTCCACACCACACCCAACATCCTTCAC
TTCAAGAATAGCCAACCTGCGGGGGTGATGCAGCCTGGACACACGTTTAC
CATCGAGCCGATGATATGTGAGGGAACCAATAAACACATATTGTGGCCAG
ACAAGTGGACAGCAACCACTGCTGATGGCCGTAGGTCGGCCCAATTTGAA
CATACGTTGCTCATCACTCCGAGTGGTGTGGAGGCGTTGACAGGTCGCCT
ACCAACCTCTCCGAAGTTTTTTTGGGAGGTCTGACGAAACAAATGTGGTG
CGGCGAGAATGGCCGCACGAGGAGAATAAATTGCAGATGCTTCCTTAAAA
ATGAAGAAATTAAATTTTGATTTTCA back to topprotein sequence of rna166 >rna166-protein ID=rna166-protein|Name=rna166|organism=Nannochloropsis gaditana|type=polypeptide|length=573bp
MTHHPHSSARQRNIVLKVLAFSSFGCLVLPYILGFHLDLYDDQLKAIWRK
RLAHQLSATEADTENGISVESKASSNAQIDYEVSFPEIDAEDRIIIQFST
DCTSFQHWQAMTMLESAERVGQRGAIVRVVCGCEKKASLTGGDQLTKEQI
QAEHAAFAEHPSSTPRFRFHLIFVDDMTHVANTSERYKFANKAQSLHFWL
DKMGGGTLREVAGPDASFDESDEDVVVISIDPDFLFMTPFGPRELGLLPS
ASWGTNSVSEAPKLRQTNLSDEILFRVPKSGREVIAQMRGRPTAQAYSLS
SVWRELPVCKEDTDGCSRVSFAEANQFYNVGPPYALHRADWLPFIDEWTA
VIPLAHAQYSTVSEDKTKHYAEMFAWAIAAAKLHLPHTLLDMAMVGCMRN
WPAERIHKAVSALQKNHAKDRTFRCGLDSPIVANNVGLAVSKDEKTSEAG
VSAPVSASDRLPAFLHYCEQCRMEEEGRVWWWYKRMLPADLIFDCGPHLV
ELPPSAMFGSSKEAFVSCTLIEIVNACKRRFRRSSLCQSAANATENESHD
VKIIPKGGHRRIREGEWHDVPAK back to topmRNA from alignment at CM002455.1:434429..436338+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna166 ID=rna166|Name=rna166|organism=Nannochloropsis gaditana|type=mRNA|length=1910bp|location=Sequence derived from alignment at CM002455.1:434429..436338+ (Nannochloropsis gaditana)
ACACCATTCCCAACCGCCCACGCATTTCACAACGAAAGGTGCACAATCAG
GTAAACAGGGCCAAAGGGCGGCTTCATTGCAAGAAGCTTGCCACCATTTG
GGACCCTATCACCATGACCCATCATCCCCATTCAAGTGCCAGACAGCGGA
ACATCGTTCTCAAAGTCTTGGCGTTTTCCTCTTTCGGTTGCCTTGTATTA
CCCTACATTCTTGGTTTTCATCTCGATCTGTACGATGACCAATTGAAAGC
CATTTGGAGAAAACGCTTGGCGCACCAACTATCGGCAACGGAGGCGGACA
CTGAAAATGGCATAAGTGTGGAGAGCAAGGCCAGCAGCAATGCCCAAATT
GATTATGAAGTATCATTCCCGGAAATCGACGCCGAGGATAGAATCATCAT
TCAATTTTCGACTGACTGCACAAGTTTTCAGCATTGGCAGGCGATGACAA
TGTTGGAGAGCGCGGAGCGTGTAGGCCAGCGTGGCGCAATCGTCAGGGTG
GTGTGTGGATGCGAAAAAAAAGCTTCATTGACAGGGGGCGACCAACTGAC
AAAAGAACAGATACAAGCGGAACATGCAGCGTTTGCCGAGCATCCAAGCT
CGACGCCTCGCTTTCGATTCCATTTGATATTCGTGGACGACATGACCCAT
GTGGCCAACACATCCGAAAGGTACAAATTTGCCAACAAAGCGCAAAGCTT
ACATTTTTGGCTGGATAAAATGGGCGGAGGAACACTTCGAGAAGTGGCTG
GACCTGATGCATCTTTCGATGAGAGCGATGAAGATGTGGTCGTCATTTCA
ATTGACCCCGATTTCCTCTTCATGACGCCATTTGGGCCGCGGGAGCTAGG
ACTGCTGCCGAGTGCTTCTTGGGGAACGAATTCTGTCAGTGAAGCCCCAA
AACTTCGTCAAACAAACTTAAGCGACGAAATTCTTTTTCGGGTTCCGAAA
AGTGGTCGCGAGGTGATTGCTCAAATGCGGGGGCGGCCGACCGCCCAAGC
CTACTCGTTGAGCTCCGTGTGGAGGGAGCTTCCGGTCTGTAAGGAGGACA
CGGACGGCTGCAGTCGAGTAAGTTTCGCTGAGGCAAACCAATTTTACAAT
GTGGGACCGCCGTATGCTTTGCATCGCGCGGACTGGCTCCCTTTCATTGA
CGAATGGACTGCTGTTATCCCTCTTGCGCACGCGCAGTACTCCACCGTTA
GCGAAGACAAGACTAAACATTACGCGGAGATGTTTGCCTGGGCGATTGCA
GCGGCAAAACTCCACCTACCTCACACATTACTGGATATGGCGATGGTAGG
ATGCATGCGAAATTGGCCAGCGGAGAGAATACATAAAGCAGTTTCTGCGC
TTCAAAAGAATCATGCGAAAGACCGAACATTTCGCTGTGGACTCGATTCA
CCAATCGTTGCTAACAACGTGGGACTCGCGGTCAGTAAGGACGAAAAGAC
TTCCGAGGCCGGAGTATCTGCCCCTGTTTCAGCTTCTGATCGActtcctg
ctttcctccattaCTGCGAACAATGTcgcatggaagaggaagggagggtg
tggtggtggtATAAAAGGATGCTGCCTGCCGACCTCATTTTTGATTGTGG
CCCGCACTTGGTGGAGTTGCCACCGTCGGCCATGTTCGGGAGCAGCAAAG
AAGCCTTTGTCTCATGTACGTTGATAGAAATCGTCAATGCGTGCAAGCGG
CGCTTCCGGCGCTCGTCGCTCTGTCAGTCAGCAGCCAACGCAACGGAAAA
TGAGAGCCATGATGTTAAGATTATTCCGAAGGGGGGTCATCGTCGTATcc
gagagggagagtggcACGATGTGCCTGCGAAGTGAAATCGACATCTCGTG
GTTGCGTAAAAATGTGCTTCATACcaaatgggaaaaaaggaaaatatTTC
ACTCGAGACG back to topCoding sequence (CDS) from alignment at CM002455.1:434429..436338+ >rna166 ID=rna166|Name=rna166|organism=Nannochloropsis gaditana|type=CDS|length=1722bp|location=Sequence derived from alignment at CM002455.1:434429..436338+ (Nannochloropsis gaditana)
ATGACCCATCATCCCCATTCAAGTGCCAGACAGCGGAACATCGTTCTCAA
AGTCTTGGCGTTTTCCTCTTTCGGTTGCCTTGTATTACCCTACATTCTTG
GTTTTCATCTCGATCTGTACGATGACCAATTGAAAGCCATTTGGAGAAAA
CGCTTGGCGCACCAACTATCGGCAACGGAGGCGGACACTGAAAATGGCAT
AAGTGTGGAGAGCAAGGCCAGCAGCAATGCCCAAATTGATTATGAAGTAT
CATTCCCGGAAATCGACGCCGAGGATAGAATCATCATTCAATTTTCGACT
GACTGCACAAGTTTTCAGCATTGGCAGGCGATGACAATGTTGGAGAGCGC
GGAGCGTGTAGGCCAGCGTGGCGCAATCGTCAGGGTGGTGTGTGGATGCG
AAAAAAAAGCTTCATTGACAGGGGGCGACCAACTGACAAAAGAACAGATA
CAAGCGGAACATGCAGCGTTTGCCGAGCATCCAAGCTCGACGCCTCGCTT
TCGATTCCATTTGATATTCGTGGACGACATGACCCATGTGGCCAACACAT
CCGAAAGGTACAAATTTGCCAACAAAGCGCAAAGCTTACATTTTTGGCTG
GATAAAATGGGCGGAGGAACACTTCGAGAAGTGGCTGGACCTGATGCATC
TTTCGATGAGAGCGATGAAGATGTGGTCGTCATTTCAATTGACCCCGATT
TCCTCTTCATGACGCCATTTGGGCCGCGGGAGCTAGGACTGCTGCCGAGT
GCTTCTTGGGGAACGAATTCTGTCAGTGAAGCCCCAAAACTTCGTCAAAC
AAACTTAAGCGACGAAATTCTTTTTCGGGTTCCGAAAAGTGGTCGCGAGG
TGATTGCTCAAATGCGGGGGCGGCCGACCGCCCAAGCCTACTCGTTGAGC
TCCGTGTGGAGGGAGCTTCCGGTCTGTAAGGAGGACACGGACGGCTGCAG
TCGAGTAAGTTTCGCTGAGGCAAACCAATTTTACAATGTGGGACCGCCGT
ATGCTTTGCATCGCGCGGACTGGCTCCCTTTCATTGACGAATGGACTGCT
GTTATCCCTCTTGCGCACGCGCAGTACTCCACCGTTAGCGAAGACAAGAC
TAAACATTACGCGGAGATGTTTGCCTGGGCGATTGCAGCGGCAAAACTCC
ACCTACCTCACACATTACTGGATATGGCGATGGTAGGATGCATGCGAAAT
TGGCCAGCGGAGAGAATACATAAAGCAGTTTCTGCGCTTCAAAAGAATCA
TGCGAAAGACCGAACATTTCGCTGTGGACTCGATTCACCAATCGTTGCTA
ACAACGTGGGACTCGCGGTCAGTAAGGACGAAAAGACTTCCGAGGCCGGA
GTATCTGCCCCTGTTTCAGCTTCTGATCGActtcctgctttcctccatta
CTGCGAACAATGTcgcatggaagaggaagggagggtgtggtggtggtATA
AAAGGATGCTGCCTGCCGACCTCATTTTTGATTGTGGCCCGCACTTGGTG
GAGTTGCCACCGTCGGCCATGTTCGGGAGCAGCAAAGAAGCCTTTGTCTC
ATGTACGTTGATAGAAATCGTCAATGCGTGCAAGCGGCGCTTCCGGCGCT
CGTCGCTCTGTCAGTCAGCAGCCAACGCAACGGAAAATGAGAGCCATGAT
GTTAAGATTATTCCGAAGGGGGGTCATCGTCGTATccgagagggagagtg
gcACGATGTGCCTGCGAAGTGA back to top
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