rna1656, rna1656 (mRNA) Nannochloropsis gaditana

Overview
Namerna1656
Unique Namerna1656
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length333
Alignment locationCM002457.1:1177634..1178733 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100477g6.539.mrna
Orig protein idgnl|cribi|Naga_100477g6.539
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1177634..1178733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100477g6gene1593Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29019.1cds1652Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1656rna1656-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1656 ID=rna1656|Name=rna1656|organism=Nannochloropsis gaditana|type=mRNA|length=333bp
ATGCCGTGCGACACCCACCGGAAGGGAGCACATGCGGACATGCGTCCTGT
CTGCCATACCGAGAGGCATGAGATTGCTTTAAGGCTGTCTTCCTCCGTGC
CCGCCCTCCCTCCCTTCCTCTTCCGCTGCCTCGCGAGCCGGAGGCTCCAC
CCGGGCGAACAAGCCCATTATCACCGTACCTCCCCCCCCGTCGGATTCCT
TCTTCTCCTGCCCTACCCCCCTCCCCTCTTCCCTCCACAAGTTTTTCCTG
CCCAATGGCCTTTCTATTCTTCACTATGGTTCCCGTGCCGTCGCCACAAA
CACATTTCGGGAGCAACCCGCAGCCACGCCTGA
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protein sequence of rna1656

>rna1656-protein ID=rna1656-protein|Name=rna1656|organism=Nannochloropsis gaditana|type=polypeptide|length=102bp
MDHCGSEVYISWTMNSCPEFWKSAFFPDVHGDGTTSLAPLSFQRWNVPHE
TPLASHPATLVTSPNFYRHAHTTGRQPGSTGLGGRLLQPVRCSALVPGGS
RV
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mRNA from alignment at CM002457.1:1177634..1178733-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1656 ID=rna1656|Name=rna1656|organism=Nannochloropsis gaditana|type=mRNA|length=1100bp|location=Sequence derived from alignment at CM002457.1:1177634..1178733- (Nannochloropsis gaditana)
ATAGAAAGCTTGGCGTCAAACTGGCTGGCTTGGAGCAAACACGATGGACC
ATTGTGGAAGTGAAGTGTATATCTCGTGGACTATGAATTCTTGCCCTGAA
TTTTGGAAGTCTGCCTTTTTCCCCGATGTCCATGGCGATGGCACGACGTC
ACTCGCTCCCCTTTCCTTCCAGAGGTGGAACGTCCCGCATGAGACCCCTC
TTGCCTCTCACCCCGCAACCCTTGTTACTTCGCCCAACTTCTACAGGCAC
GCGCACACCACAGGAAGACAGCCAGGAAGCACTGGGCTCGGCGGGAGGCT
TCTCCAGCCCGTGAGGTGTTCCGCATTGGTGCCAGGAGGGAGTCGAGTAT
AGAGGATTAAATTACCAGACACTTCTACAGCAACACGTCAAGGCGTCCGC
GAGGCTAAAAAGTCGTAGTCGTTCGCGGCAAGCATGGCAGACTATGCGAC
AGAACTTTTGAAAAGACAGCTACACGGTGCGTGCTTAAATATGAATATAG
GGCACCCACGGAGCTCGCTCTGCCCCCTCTACCTGTTGAGCCTTTTTGGC
CTCTGGCACTGCTTTCCCCCACCAGTCCCTTCCTCAACACCCTATAATCG
CCTGTTGACTTCGCTAGATGGATGGAATGCAACCTCAGATAAAGGCTGAG
CGGCCAACGAATGAGCTTTGGCTGTTTGCCTGTGGCATCTCATCGTTCTC
TCGCCGCGGACCGACCCACCCCCGCGCTTTCTTTTTTGCTTCTCGCACAT
TGTACCTCTTTACACCACAGAGCTCAACAAAAATCCTCCGGAAGGCGTCT
CAGTAGGCTTGGTCGATGACAGCGTCTTCGAGTGGGAGCTCCTCCTTGTG
GGCCCTGCCGATACGTTATATGAAGGTAGGCTTGAGGCTTTCAAGACTTT
TCCTCCCAGCCTCCCTCCCCCTTCCCTTTTGTCGTTGTCGTCTTTTCGTT
GTGCCTGCCATCTAAGTCTCCACTCTGACTTCATCCGTCCACTCCCTGGG
CAGGCGGCTTCTTCAAGGCCCGCTTGACCTTTCCCAGCGACTTCCCCAAC
ATGCCTCCTACCATGACTTTCCAGACGGAGATGTGGCATCCGAACGTAGG
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Coding sequence (CDS) from alignment at CM002457.1:1177634..1178733-

>rna1656 ID=rna1656|Name=rna1656|organism=Nannochloropsis gaditana|type=CDS|length=309bp|location=Sequence derived from alignment at CM002457.1:1177634..1178733- (Nannochloropsis gaditana)
ATGGACCATTGTGGAAGTGAAGTGTATATCTCGTGGACTATGAATTCTTG
CCCTGAATTTTGGAAGTCTGCCTTTTTCCCCGATGTCCATGGCGATGGCA
CGACGTCACTCGCTCCCCTTTCCTTCCAGAGGTGGAACGTCCCGCATGAG
ACCCCTCTTGCCTCTCACCCCGCAACCCTTGTTACTTCGCCCAACTTCTA
CAGGCACGCGCACACCACAGGAAGACAGCCAGGAAGCACTGGGCTCGGCG
GGAGGCTTCTCCAGCCCGTGAGGTGTTCCGCATTGGTGCCAGGAGGGAGT
CGAGTATAG
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Synonyms
Publications