rna1655, rna1655 (mRNA) Nannochloropsis gaditana

Overview
Namerna1655
Unique Namerna1655
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length507
Alignment locationCM002457.1:1176536..1176868 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102042g1.1320.mrna
Orig protein idgnl|cribi|Naga_102042g1.1320
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1176536..1176868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102042g1gene1592Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1655rna1655-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29022.1cds1651Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1655 ID=rna1655|Name=rna1655|organism=Nannochloropsis gaditana|type=mRNA|length=507bp
ATGGGCGAGGTGGTGCTGTACACAGACTCCCAAGGCCGCCGGGCCAAGAC
CGTGATTAAACACGTCCACACCGACGACCATCCCCCCTACTACACCATCA
CCCTCCCCAACGGATCGGAACGACAGACCGACTTCCACCACATCGCCAAG
CTGCCTGGAACGCAGGCGCCGTCCTTCCCGCCCTCCCTCCCGCCCTCCCT
CCCTCCCTCCCAGCCACCCGTGGGGGGGGCCTTGGGACAAAGAGATCTCG
TCCACTTCCATGCCGGTTCCCGCCTTCGGATTGCAGCAGCAGCAGCAGCC
ATCGACGCGTCCCCCCCCCTCGTCCCCGCAAGGGCACATGAATCCCTTCC
TATCTCCTCCTGCCCCTCCTCCCTCCCCCCCTCCCGCCCGCCCGGCAACC
TCGAGTGGAAATCCGTTCGACTTGTTCTGAGGCGGCCGGGGAGTGGGAGA
GGGAGACCTGGCATGAATAGTAGAGGAGGAAGGAAAACCATAAAGAAAAG
GAATTGA
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protein sequence of rna1655

>rna1655-protein ID=rna1655-protein|Name=rna1655|organism=Nannochloropsis gaditana|type=polypeptide|length=110bp
MPCDTHRKGAHADMRPVCHTERHEIALRLSSSVPALPPFLFRCLASRRLH
PGEQAHYHRTSPPVGFLLLLPYPPPLFPPQVFPAQWPFYSSLWFPCRRHK
HISGATRSHA
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mRNA from alignment at CM002457.1:1176536..1176868+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1655 ID=rna1655|Name=rna1655|organism=Nannochloropsis gaditana|type=mRNA|length=333bp|location=Sequence derived from alignment at CM002457.1:1176536..1176868+ (Nannochloropsis gaditana)
ATGCCGTGCGACACCCACCGGAAGGGAGCACATGCGGACATGCGTCCTGT
CTGCCATACCGAGAGGCATGAGATTGCTTTAAGgctgtcttcctccgtgc
ccgccctccctcccttcctcttccgctgccTCGCGAGCCGGAGGCTCCAC
CCGGGCGAACAAGCCCATTATCACcgtacctccccccccgtcggattcct
tcttctcctgccctacccccctcccctcttccctccacaaGTTTTTCCTG
CCCAATGGCCTTTCTATTCTTCACTATGGTTCCCGTGCCGTCGCCACAAA
CACATTTCGGGAGCAACCCGCAGCCACGCCTGA
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Coding sequence (CDS) from alignment at CM002457.1:1176536..1176868+

>rna1655 ID=rna1655|Name=rna1655|organism=Nannochloropsis gaditana|type=CDS|length=333bp|location=Sequence derived from alignment at CM002457.1:1176536..1176868+ (Nannochloropsis gaditana)
ATGCCGTGCGACACCCACCGGAAGGGAGCACATGCGGACATGCGTCCTGT
CTGCCATACCGAGAGGCATGAGATTGCTTTAAGgctgtcttcctccgtgc
ccgccctccctcccttcctcttccgctgccTCGCGAGCCGGAGGCTCCAC
CCGGGCGAACAAGCCCATTATCACcgtacctccccccccgtcggattcct
tcttctcctgccctacccccctcccctcttccctccacaaGTTTTTCCTG
CCCAATGGCCTTTCTATTCTTCACTATGGTTCCCGTGCCGTCGCCACAAA
CACATTTCGGGAGCAACCCGCAGCCACGCCTGA
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Synonyms
Publications