rna1654, rna1654 (mRNA) Nannochloropsis gaditana

Overview
Namerna1654
Unique Namerna1654
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length189
Alignment locationCM002457.1:1175857..1176524 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102042g2.1321.mrna
Orig protein idgnl|cribi|Naga_102042g2.1321
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1175857..1176524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102042g2gene1591Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1654rna1654-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29023.1cds1650Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1654 ID=rna1654|Name=rna1654|organism=Nannochloropsis gaditana|type=mRNA|length=189bp
ATGACCGGGCTGGACAAACGAAAGGAGGAGCGCTTGCTTAGAGCAGTCAA
AGACTTGAGCAAACTTCCCGGAAACAAGCGGTGCGCTGATTGCACCGAAA
AGCTGCCTCAATATGTCAATCTTACATTTAATACCTTCATTTGCACCGCA
TGCTCAGGCATCCACCGCGAATTCTCGCACCGGCTTTGA
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protein sequence of rna1654

>rna1654-protein ID=rna1654-protein|Name=rna1654|organism=Nannochloropsis gaditana|type=polypeptide|length=168bp
MGEVVLYTDSQGRRAKTVIKHVHTDDHPPYYTITLPNGSERQTDFHHIAK
LPGTQAPSFPPSLPPSLPPSQPPVGGALGQRDLVHFHAGSRLRIAAAAAA
IDASPPLVPARAHESLPISSCPSSLPPSRPPGNLEWKSVRLVLRRPGSGR
GRPGMNSRGGRKTIKKRN
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mRNA from alignment at CM002457.1:1175857..1176524+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1654 ID=rna1654|Name=rna1654|organism=Nannochloropsis gaditana|type=mRNA|length=668bp|location=Sequence derived from alignment at CM002457.1:1175857..1176524+ (Nannochloropsis gaditana)
ATGGTGCgcttctccccgccttccctggcccctcccccgccccctccaga
CTCTATCCATCGACGCTGCCTTTGGGGACTTGAGCCTGTCGGGTAGCGCC
GGCGCCGCCTGCCCCGGAAGGAgcggcgccctccctccctccctccctcc
ctaccttcgcCAAGGGCGAGGTGGTGCTGTACACAGACTCCCAAGGCCGC
CGGGCCAAGACCGTGATTAAACACGTCCACACCGACGACCATCCCCCCTA
CTACACCATCACCCTCCCCAACGGATCGGAACGACAGACCGACTTCCACC
ACATCGCCAAGCTGCCTGGAACGCAGgcgccgtccttcccgccctccctc
ccgccctccctccctccctcccagccacCCGTGGGGGGGGCCTTGGGACA
AAGAGATCTCGTCCACTTCCATGCCGGTTCCCGCCTTCGGattgcagcag
cagcagcagccatcgacgcgtccccccccctcgtccccgcaAGGGCACAT
GAATCCCTTCCtatctcctcctgcccctcctccctccccccctcccgccc
gcccggcAACCTCGAGTGGAAATCCGTTCGACTTGTTCTGAGGCGGccgg
ggagtgggagagggagacctGGCATGAATagtagaggaggaaggaaaacc
aTAAAGAAAAGGAATTGA
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Coding sequence (CDS) from alignment at CM002457.1:1175857..1176524+

>rna1654 ID=rna1654|Name=rna1654|organism=Nannochloropsis gaditana|type=CDS|length=1014bp|location=Sequence derived from alignment at CM002457.1:1175857..1176524+ (Nannochloropsis gaditana)
ATGGGCGAGGTGGTGCTGTACACAGACTCCCAAGGCCGCCGGGCCAAGAC
CGTGATTAAACACGTCCACACCGACGACCATCCCCCCTACTACACCATCA
CCCTCCCCAACGGATCGGAACGACAGACCGACTTCCACCACATCGCCAAG
CTGCCTGGAACGCAGgcgccgtccttcccgccctccctcccgccctccct
ccctccctcccagccacCCGTGGGGGGGGCCTTGGGACAAAGAGATCTCG
TCCACTTCCATGCCGGTTCCCGCCTTCGGattgcagcagcagcagcagcc
atcgacgcgtccccccccctcgtccccgcaAGGGCACATGAATCCCTTCC
tatctcctcctgcccctcctccctccccccctcccgcccgcccggcAACC
TCGAGTGGAAATCCGTTCGACTTGTTCTGAGGCGGccggggagtgggaga
gggagacctGGCATGAATagtagaggaggaaggaaaaccaTAAAGAAAAG
GAATTGAATGGGCGAGGTGGTGCTGTACACAGACTCCCAAGGCCGCCGGG
CCAAGACCGTGATTAAACACGTCCACACCGACGACCATCCCCCCTACTAC
ACCATCACCCTCCCCAACGGATCGGAACGACAGACCGACTTCCACCACAT
CGCCAAGCTGCCTGGAACGCAGgcgccgtccttcccgccctccctcccgc
cctccctccctccctcccagccacCCGTGGGGGGGGCCTTGGGACAAAGA
GATCTCGTCCACTTCCATGCCGGTTCCCGCCTTCGGattgcagcagcagc
agcagccatcgacgcgtccccccccctcgtccccgcaAGGGCACATGAAT
CCCTTCCtatctcctcctgcccctcctccctccccccctcccgcccgccc
ggcAACCTCGAGTGGAAATCCGTTCGACTTGTTCTGAGGCGGccggggag
tgggagagggagacctGGCATGAATagtagaggaggaaggaaaaccaTAA
AGAAAAGGAATTGA
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Synonyms
Publications