rna165, rna165 (mRNA) Nannochloropsis gaditana

Overview
Namerna165
Unique Namerna165
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length849
Alignment locationCM002455.1:432733..434231 -

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Properties
Property NameValue
Productmethionine aminopeptidase
Orig transcript idgnl|cribi|Naga_100013g54.9762.mrna
Orig protein idgnl|cribi|Naga_100013g54.9762
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:432733..434231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100013g54gene157Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna165rna165-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30474.1cds165Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna165 ID=rna165|Name=rna165|organism=Nannochloropsis gaditana|type=mRNA|length=849bp
GCATATCTCGTAATGTCATACTTTCCTACTTCTCTTGATTAATTTGTTAC
AGCGTTCCCTTGGATATGGACGAAAAGGGTAGAGTATTGCAAGGCCGTCT
CGATTTTTGTGAAAGAAATGTTACAACGCTCCGGCAGGGGGTCAGGGCTC
TTTTAAGAAATCACGATGAAGGATGCAATGTGACAATGGACCTTTCTCAA
AAGGTTCGCGACACGGCTGCACAAGAGCAGTTCATCGATCTGCAAGAAGA
CCTCATCGCAATAGCCGAATGTACCAAGAGATTAGCAGAAGAGCGCAGGA
CGATTATGTGCGAGCGTGCCGAAGAGCGGGTTATCTCTACTTTTGACCTC
ATTTTAAGTCGTGTTCTGCATCCGACAAGGCTTTTGTTGAAAGATAGGGA
GAGAGCTCTTCGCAAATTTCGAGCCATGGAGAGGAAAATTACATTTTCAG
GAGAACAGACTCTGCTGAGCATGCTTAACTTGGAAGATGACGCAGATACA
AAGCAGCAAAAGCTGGCTAATTACAGCGAGTGCGCCAAGCATACCGACGA
AGTGGTGGACAGTAACTTTCGATGCTTCGAAAAAAGTAGAGTTCTGGAAA
TGAAGGCCATGCTGGAGGAGACCTTGCGTGCGGAGATGCTGTACCATTGC
CGGGCGTTAGAAATCTTGGAGCCCCTGTGCGTCTCCATGCGTCGCTTAGA
TCCGGATGAAGCCATGGCCAGCATGACCCAAGAGCTAGACGAGCTGAACA
CCGCGGAGGACGAAAATAATGGGCAGAGCAAAAGAGCACACATGAGGGGC
AGAAACAGATGTTGAAGGAGACAAAGAAAATCAGGGCAGATTGGGAAAA
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protein sequence of rna165

>rna165-protein ID=rna165-protein|Name=rna165|organism=Nannochloropsis gaditana|type=polypeptide|length=427bp
MHLISVFSFPSQALPSCRSVVKILQPKERLALARFTRAPFRVKMYLSYER
SRRNGGKLLAVYRSFVLLVIFLCHLSSAFQPSSPVQYWGRSRGDILCKKG
SSSGSGPPASKGFGFGAKKEAKGDKFKYTGRLKPGVLSPPRDVPADILRP
DYALDGMPKARDPPLPWMIEVKSPEDIAAMRASGLVAREVLDAVGRQIKV
GMTTDEIDSIAHGETIKRGAYPSPLNYQGFPKSCCTSLNEVVCHGIPDVS
TKLQDGDIVNVDVTVYYKGYHGDCSETFCVGNVDEAGKRLVKVTYDAWQK
AIEFCKPGRPYKDIGAIIEEYVTKEGFTTVREFCGHGVGKVFHTTPNILH
FKNSQPAGVMQPGHTFTIEPMICEGTNKHILWPDKWTATTADGRRSAQFE
HTLLITPSGVEALTGRLPTSPKFFWEV
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mRNA from alignment at CM002455.1:432733..434231-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna165 ID=rna165|Name=rna165|organism=Nannochloropsis gaditana|type=mRNA|length=1499bp|location=Sequence derived from alignment at CM002455.1:432733..434231- (Nannochloropsis gaditana)
ATGCACCTCATCTCGGTCTTCTCGTTTCCGTCACAGGCGCTTCCTTCTTG
CCGAAGTGTTGTCAAGATACTTCAGCCCAAAGAGCGACTAGCTCTTGCAC
GATTTACAAGAGCCCCATTTCGGGTGAAAATGTACTTGTCCTACGAGCGA
TCAAGAAGAAATGGTGGTAAGCTGCTCGCAGTCTACCGATCTTTCGTCCT
GCTTGTTATCTTCCTCTGCCATCTATCATCCGCCTTCCAGCCCTCTTCTC
CCGTGCAGTACTGGGGGAGGTCGAGGGGAGACATTCTGTGTAAAAAAGGA
TCGAGTAGCGGCAGTGGACCACCAGCATCAAAGGGATTTGGATTTGGTGC
TAAAAAGGAAGCAAAGGGAGACAAATTCAAGTACACCGGCCGTCTAAAGC
CTGGTGTATTGAGTCCTCCCCGAGATGTCCCAGCAGACATATTGCGGCCC
GACTATGCTCTTGATGGGTAAGCAGTCGACGGCCGATTGTTGGAATGGCT
CATAGATGCTGTGATTGTGTAAAATTTGGAGTCTTTCACTAAGTTCCTAG
GACGCGCAACTTATTCCTGTTTCTCTGACAAATATCACAGTATGCCGAAA
GCTCGCGATCCGCCGTTGCCTTGGATGATCGAAGTGAAATCTCCGGAGGA
TATCGCCGCTATGCGTGCCTCTGGATTGGTCGCACGTGAAGTACTGGATG
CTGTCGGTCGACAGATCAAGGTGGGGATGACGACTGACGAGATCGATAGC
ATCGCGCACGGGGAAACGATAAAGCGGGGCGCTTACCCCTCACCGCTAAA
CTATCAAGGATTTCCTAAGTCGTGCTGCACAAGCTTGAACGAAGTCGTCT
GTCACGGCATTCCCGACGTGTCGACCAAATTGCAGGATGGTGATATAGTT
AACGTGGATGTGACCGTCTATTATAAGGGGTATCACGGGGATTGCTCGGA
AACCTTTTGTGTTGGGAACGTCGATGAGGCAGGGAAAAGGCTTGTCAAAG
TTACATACGACGCGTGGCAAAAAGCAATTGAGTTCTGCAAGCCTGGGCGT
CCTTACAAAGACATCGGTGCAATTATCGAAGAGTATGTAACCAAGGAGGG
CTTCACCACCGTGCGAGAGTTTTGCGGGCACGGTGTGGGAAAGGTTTTCC
ACACCACACCCAACATCCTTCACTTCAAGAATAGCCAACCTGCGGGGGTG
ATGCAGCCTGGACACACGTTTACCATCGAGCCGATGATATGTGAGGGAAC
CAATAAACACATATTGTGGCCAGACAAGTGGACAGCAACCACTGCTGATG
GCCGTAGGTCGGCCCAATTTGAACATACGTTGCTCATCACTCCGAGTGGT
GTGGAGGCGTTGACAGGTCGCCTACCAACCTCTCCGAAGTTTTTTTGGGA
GGTCTGACGAAACAAATGTGGTGCGGCGAGAATGGCCGCACGAGGAGAAT
AAATTGCAGATGCTTCCTTAAAAATGAAGAAATTAAATTTTGATTTTCA
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Coding sequence (CDS) from alignment at CM002455.1:432733..434231-

>rna165 ID=rna165|Name=rna165|organism=Nannochloropsis gaditana|type=CDS|length=2568bp|location=Sequence derived from alignment at CM002455.1:432733..434231- (Nannochloropsis gaditana)
TATGCCGAAAGCTCGCGATCCGCCGTTGCCTTGGATGATCGAAGTGAAAT
CTCCGGAGGATATCGCCGCTATGCGTGCCTCTGGATTGGTCGCACGTGAA
GTACTGGATGCTGTCGGTCGACAGATCAAGGTGGGGATGACGACTGACGA
GATCGATAGCATCGCGCACGGGGAAACGATAAAGCGGGGCGCTTACCCCT
CACCGCTAAACTATCAAGGATTTCCTAAGTCGTGCTGCACAAGCTTGAAC
GAAGTCGTCTGTCACGGCATTCCCGACGTGTCGACCAAATTGCAGGATGG
TGATATAGTTAACGTGGATGTGACCGTCTATTATAAGGGGTATCACGGGG
ATTGCTCGGAAACCTTTTGTGTTGGGAACGTCGATGAGGCAGGGAAAAGG
CTTGTCAAAGTTACATACGACGCGTGGCAAAAAGCAATTGAGTTCTGCAA
GCCTGGGCGTCCTTACAAAGACATCGGTGCAATTATCGAAGAGTATGTAA
CCAAGGAGGGCTTCACCACCGTGCGAGAGTTTTGCGGGCACGGTGTGGGA
AAGGTTTTCCACACCACACCCAACATCCTTCACTTCAAGAATAGCCAACC
TGCGGGGGTGATGCAGCCTGGACACACGTTTACCATCGAGCCGATGATAT
GTGAGGGAACCAATAAACACATATTGTGGCCAGACAAGTGGACAGCAACC
ACTGCTGATGGCCGTAGGTCGGCCCAATTTGAACATACGTTGCTCATCAC
TCCGAGTGGTGTGGAGGCGTTGACAGGTCGCCTACCAACCTCTCCGAAGT
TTTTTTGGGAGGTCTGAATGCACCTCATCTCGGTCTTCTCGTTTCCGTCA
CAGGCGCTTCCTTCTTGCCGAAGTGTTGTCAAGATACTTCAGCCCAAAGA
GCGACTAGCTCTTGCACGATTTACAAGAGCCCCATTTCGGGTGAAAATGT
ACTTGTCCTACGAGCGATCAAGAAGAAATGGTGGTAAGCTGCTCGCAGTC
TACCGATCTTTCGTCCTGCTTGTTATCTTCCTCTGCCATCTATCATCCGC
CTTCCAGCCCTCTTCTCCCGTGCAGTACTGGGGGAGGTCGAGGGGAGACA
TTCTGTGTAAAAAAGGATCGAGTAGCGGCAGTGGACCACCAGCATCAAAG
GGATTTGGATTTGGTGCTAAAAAGGAAGCAAAGGGAGACAAATTCAAGTA
CACCGGCCGTCTAAAGCCTGGTGTATTGAGTCCTCCCCGAGATGTCCCAG
CAGACATATTGCGGCCCGACTATGCTCTTGATGGTATGCCGAAAGCTCGC
GATCCGCCGTTGCCTTGGATGATCGAAGTGAAATCTCCGGAGGATATCGC
CGCTATGCGTGCCTCTGGATTGGTCGCACGTGAAGTACTGGATGCTGTCG
GTCGACAGATCAAGGTGGGGATGACGACTGACGAGATCGATAGCATCGCG
CACGGGGAAACGATAAAGCGGGGCGCTTACCCCTCACCGCTAAACTATCA
AGGATTTCCTAAGTCGTGCTGCACAAGCTTGAACGAAGTCGTCTGTCACG
GCATTCCCGACGTGTCGACCAAATTGCAGGATGGTGATATAGTTAACGTG
GATGTGACCGTCTATTATAAGGGGTATCACGGGGATTGCTCGGAAACCTT
TTGTGTTGGGAACGTCGATGAGGCAGGGAAAAGGCTTGTCAAAGTTACAT
ACGACGCGTGGCAAAAAGCAATTGAGTTCTGCAAGCCTGGGCGTCCTTAC
AAAGACATCGGTGCAATTATCGAAGAGTATGTAACCAAGGAGGGCTTCAC
CACCGTGCGAGAGTTTTGCGGGCACGGTGTGGGAAAGGTTTTCCACACCA
CACCCAACATCCTTCACTTCAAGAATAGCCAACCTGCGGGGGTGATGCAG
CCTGGACACACGTTTACCATCGAGCCGATGATATGTGAGGGAACCAATAA
ACACATATTGTGGCCAGACAAGTGGACAGCAACCACTGCTGATGGCCGTA
GGTCGGCCCAATTTGAACATACGTTGCTCATCACTCCGAGTGGTGTGGAG
GCGTTGACAGGTCGCCTACCAACCTCTCCGAAGTTTTTTTGGGAGGTCTG
AATGCACCTCATCTCGGTCTTCTCGTTTCCGTCACAGGCGCTTCCTTCTT
GCCGAAGTGTTGTCAAGATACTTCAGCCCAAAGAGCGACTAGCTCTTGCA
CGATTTACAAGAGCCCCATTTCGGGTGAAAATGTACTTGTCCTACGAGCG
ATCAAGAAGAAATGGTGGTAAGCTGCTCGCAGTCTACCGATCTTTCGTCC
TGCTTGTTATCTTCCTCTGCCATCTATCATCCGCCTTCCAGCCCTCTTCT
CCCGTGCAGTACTGGGGGAGGTCGAGGGGAGACATTCTGTGTAAAAAAGG
ATCGAGTAGCGGCAGTGGACCACCAGCATCAAAGGGATTTGGATTTGGTG
CTAAAAAGGAAGCAAAGGGAGACAAATTCAAGTACACCGGCCGTCTAAAG
CCTGGTGTATTGAGTCCTCCCCGAGATGTCCCAGCAGACATATTGCGGCC
CGACTATGCTCTTGATGG
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Synonyms
Publications