rna1649, rna1649 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1649
Unique Name	rna1649
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2143
Alignment location	CM002457.1:1161403..1163252 +

Link to JBrowse

Properties


Property Name	Value
Product	diacylglycerol o-acyltransferase 2
Orig transcript id	gnl\|cribi\|Naga_100071g18.7958.mrna
Orig protein id	gnl\|cribi\|Naga_100071g18.7958
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:1161403..1163252 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100071g18	gene1586	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1649	rna1649-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29040.1	cds1645	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:1161403..1163252+
coding sequence from alignment at CM002457.1:1161403..1163252+

mRNA sequence

>rna1649 ID=rna1649|Name=rna1649|organism=Nannochloropsis gaditana|type=mRNA|length=2143bp
CAGGTCGACCCGAGCTAGACTCACGTCTTCGTACTCACTTCACGCTCATG
ATTCCTGACCAGGTGGCACGCGGTTGTCGGCAGCTTTACTTCCAAGCTTG
TGCTAGCCCCGGCCGAGTCAACCTCCCGTCCTCGCTCCTATCCATTCAAC
CATGGGGAAGCCGAAAGGAAGCTCTTTGAGCTCCTCCAAAAGCAGCGACA
ACCCCAACCGCAAAGCTTCAGATGTAAAACACAAAGGCGGGAAGCTGCGA
GACCGCGCCACCATCAATCGTCTCCAAATGTACCGGGGAGGGAAGCCCAT
CCGTAACAAAAAAGGCAAAGTCGTGGGAGGTACGTTAATGATGAAAGACA
AAGTAGGCGGACAAGCCATCACCGGGGCGACGGGGCGCGTGCAGCCCGAC
CGACGGTGGTTTGGAAACACGCGTGTGATCTCCCAGGAGGACCTGGACCG
CTTCCGGGAAGAAATGACAACGCGGGCGGCCGATCCTTTTTCCATCGTGC
TGCGTCGGAAAAAGATTCCCATGGGCCTGCTCGTGGACAGTGAGAAAGCG
CAGCGAATGAATCTGCTGCAAACTGAGAGTTTTCAGGCGACCTTCGGCGC
CAAGTCGACGCGAAAACGTCCGAAACTGTCGTCGGGGGTGACTGAGGCAG
CCCCAAGGGGGGTGCCATCAGGCAATGGGGATTATGCCTCCCTTTTGCAA
CGCGTAGAAGTGGAGCAAGCCAAATACCAGGCACCTGAACACGCCGACGG
GGCCTTGGTGGAAGAGTTGGATTACAGGGTGGAACGACGTCACGATTTGT
TCGACAAGGGGCAGTCCCGTCGGATATGGGGGGAGTTGTACAAAGTGATC
GATTGCTCGGACGTGGTAATCCAGGTGCTGGACGCGCGGAACATTCCTGG
GACAAGGTGCGCGCATTTGGAACGTCATTTAAAAAAGAATGCCAGCCACA
AACACCTGATCCTCATCGTCAACAAGTGCGACCTGGTGCCTGCCTGGGTG
GTCCGACGATGGGTCCGACTGCTCTCTCAGCACTACCCCACCCTGGCCTT
TCACGCCTCTATCACGAACGCGTTCGGAAAGGGGAGTCTGATCAACCTGC
TGCGTCAGTACGCGAAACTGCATCAGGACAAGAAACAGATCTCGGTCGGG
GTGGTGGGGTACCCGAACGTGGGCAAGTCCTCCATCATCAACACCCTTAA
AAGCAAGAAAGTCTGCAAAGTGGCCCCCGTGCCGGGCGAGACCAAGGTCT
GGCAGTACATCACGCTCATGAAGCGCATCTACCTGATCGACTGCCCCGGT
ATCGTCTACGACACGGGGGACGACGAGACGGCCATCGTCTTGAAAGGCGT
GGTGCGGGCGGAGCGCCTGCCCGACCCGACCGAATTTGTTCCCGCCATTT
TGGAGGAAGTGAAAAGGGAGTACGTGGTTCGGACGTACGGGGTGAGGGAA
TGGGATGACGCACAGGATTTCATGACCAAGTTGGCCAAGAAAACGGGCAA
GTTGGTCAAGGGGGGGGAACCGGACTTGAACACAGTGGCCGTCTCTCTAA
TCAACGACTTTCAGCGAGGCAAACTGCCGCATTTTGTGCCGCCGCCTGTC
AAGGAGGGGGAAGAAGGGGAGGAGGGGGAGGAGGAGGGGGGGTTGGAGGT
GTGGGCGGCTGAGGCTAAGGGGCAAGGGGGGGTCGGGGAGAGGGAAAAGG
ACGAGGAGGACAATGAGGAGGAGGAGGAGGAAGAGGACGAGGAGGAGGAA
GAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGAAGGAGGAGGAGGAGGAGGAGGATAACCTGGCGGAAGTGGAGCAAG
AGAAGGAGGAAAATGATGAAAATGAAAAGGAGGAGGAGGAGGAGGTAGAG
GAGGTAAAGATGGCGGATAAGGGAAAGCAGCCACGCGTCTCTGGAGTGAG
GAGGGCGAAGCAGGCACGGGGAGATGAAGGAGAGAAGACAGCGTGCAAGA
CGAGCACGAGGACGAAAGGGACGGGCCGAAACAGGTCGTGGGGAAGATCG
AGTATGGGAGCCTTCCAGTCGAGTTGTGACACGGTAACAGACTTGGCTGA
ATGGTGTGGTGTCCGTCATGAAAACGAGCATGGATGCACATGA

protein sequence of rna1649

>rna1649-protein ID=rna1649-protein|Name=rna1649|organism=Nannochloropsis gaditana|type=polypeptide|length=488bp
MYRLSGRSSWALLWVARAFSTRSSDTHSSLSMPTVWRPRWRRHQIGGTTS
GTATAAGSTIEDSQNRENNESSSRNKLDSIHDSSVPENLAASEPPPSNPV
TVTLADVCPNTRLTLPWWEEALLFPCFIVLCAPIFSFIMLGVALVPIFGW
AGAVVRYLPLLCTYWTLLYFDLVPRRRRLSHPALSCWLLRAVVRYFNYHV
IVEDPSSLQPATPYIGAQSPHGIYPIATICGAPFNSAVFPGQDAYCLAAS
ALQLQPFLWQWMECLGGRPISAAAIKEVVDQGDVCCLVPGGIAEMFMLDS
SNRTEQILIRRGFVREALKNDVDIVPIYHFNHTQTFSYVLPPYLNAWLSV
ACRKTGLPGCFLIGRWGLFVPHKVDMFTVVGRPIPVRERIRQMRGRKTNG
GKEGKIPGTEEVRSRECSVVEPTVEEIEAIVAEYKEALRRIYYNFRPVGS
KRELIMIDNRGSPGSTVVGGNKEEQEGKSDGCERSLDR

mRNA from alignment at CM002457.1:1161403..1163252+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1649 ID=rna1649|Name=rna1649|organism=Nannochloropsis gaditana|type=mRNA|length=1850bp|location=Sequence derived from alignment at CM002457.1:1161403..1163252+ (Nannochloropsis gaditana)
ATGTATCGCCTTTCAGGCCGTAAGGTTCAAAACAACGCCAGGCACCCGAC
AATTTCCCTTAAGTCAGCTCCTATACGTGTGAATACTGGTCAAAGCACGC
GGTGCCCTCAAGTGCTTCCTAGGACCTTCAATCCCGAAACCTACGTTGAG
GATCAGACAAAGATCGTGTGATCCGAAGCAATCCGCCAGAGCGACACGCA
GAAcgcaagggggaaagcacGATATTCGCTGCAGGCTATTCAAATCCAAA
TTCCCATGGCACACATGCCTTGACCCTGTCGTCCATCTCTGCACATACAG
GGTCATCGTGGGCTCTTTTGTGGGTGGCTCGTGCATTTAGCACGCGTTCT
TCCGACACTCATTCCTCCCTAAGTATGCCTACAGTGTGGAGGCCTCGATG
GCGCCGGCATCAGATTGGAGGTACTACGTCGGGAACCGCCACAGCTGCGG
GCAGCACAATTGAAGACTCACAGAACAGGGAAAACAATGAAAGTAGTAGT
AGGAACAAACTTGATTCGATTCATGACTCCAGTGTCCCTGAGAACCTAGC
GGCTtctgaacctcctccttcgaaTCCCGTTACTGTCACGCTGGCAGATG
TGTGCCCTAACACTCGCCTAACGCTGCCttggtgggaggaggccctcctt
ttcccgtgCTTCATTGTGTTGTGCGCGCCTATCTTCTCTTTTATCATGCT
GGGCGTGGCGCTGGTGCCCATTTTTGGTTGGGCTGGTGCCGTCGTACGgt
accttcccctcctttgcaCGTATTGGACGCTACTTTATTTTGATCTCGTT
CCCCGCCGGCGACGTCTTAGTCATCCGGCACTTTCATGCTGGCTGTTGCG
GGCGGTCGTCCGGTACTTCAACTACCATGTGATTGTGGAAGacccctcgt
ccctccaACCTGCTACGCCGTACATTGGTGCTCAGAGCCCTCACGGCATT
TACCCTATTGCCACAATATGTGGCGCTCCTTTCAATTCCGCGGTTTTCCC
CGGTCAAGACGCCTATTGCCTTGCCGCCTCAGCCTTGCAATTACAACCTT
TTCTCTGGCAGTGGATGGAGTGCCTGGGGGGGCGGCCCATTTCGGCCGCG
GCTATCAAAGAGGTTGTCGACCAAGGCGACGTGTGCTGCCTCGTGCCCGG
GGGAATCGCAGAAATGTTCATGCTGGACAGCAGCAATCGGACGGAGCAGA
TCCTCATCCGTCGGGGCTTTGTGCGCGAGGCGCTGAAGAACGACGTGGAC
ATCGTGCCCATTTACCACTTTAACCACACGCAGACCTTCAGCTACGTGCT
CCCCCCATACCTCAACGCGTGGCTGTCGGTGGCGTGCCGGAAAACGGGGC
TTCCGGGATGCTTTTTGATCGGTAGATGGGGCTTGTTCGTGCCGCACAAA
GTGGATATGTTCACGGTGGTGGGTCGTCCCATCCCTGTGCGGGAGCGGAT
CAGGCAGATGAGGGGTAGGAAAACcaatggaggaaaggagggaaagatcc
CAGGCACTGAGGAGGTAAGAAGCAGGGAGTGTAGTGTGGTGGAACCTACT
GTGGAGGAGATTGAGGCCATAGTTGCCGAGTACAAGGAAGCTTTGCGGCG
GATCTATTACAACTTTCGGCCTGTGGGATCGAAACGTGAGTTGATCATGA
TCGATAATCGAGGAAGCCCTGGTAGCACAGTGGTGGGTGGGAACAAGGAG
GAACAAGAGGGGAAATCGGACGGGTGTGAACGAAGCCTGGATCGGTAAAT
TAGGGTGTGCTTAGGTTTTAGAAGCATCGTGTGTGAATAAAATGGTGAGT
GCATCGTCCTCGCAAAAGTAGGCAAAATATGTGGTGTGATCTTGCAGAAC

Coding sequence (CDS) from alignment at CM002457.1:1161403..1163252+

>rna1649 ID=rna1649|Name=rna1649|organism=Nannochloropsis gaditana|type=CDS|length=2934bp|location=Sequence derived from alignment at CM002457.1:1161403..1163252+ (Nannochloropsis gaditana)
ATGTATCGCCTTTCAGGCCGGTCATCGTGGGCTCTTTTGTGGGTGGCTCG
TGCATTTAGCACGCGTTCTTCCGACACTCATTCCTCCCTAAGTATGCCTA
CAGTGTGGAGGCCTCGATGGCGCCGGCATCAGATTGGAGGTACTACGTCG
GGAACCGCCACAGCTGCGGGCAGCACAATTGAAGACTCACAGAACAGGGA
AAACAATGAAAGTAGTAGTAGGAACAAACTTGATTCGATTCATGACTCCA
GTGTCCCTGAGAACCTAGCGGCTtctgaacctcctccttcgaaTCCCGTT
ACTGTCACGCTGGCAGATGTGTGCCCTAACACTCGCCTAACGCTGCCttg
gtgggaggaggccctccttttcccgtgCTTCATTGTGTTGTGCGCGCCTA
TCTTCTCTTTTATCATGCTGGGCGTGGCGCTGGTGCCCATTTTTGGTTGG
GCTGGTGCCGTCGTACGgtaccttcccctcctttgcaCGTATTGGACGCT
ACTTTATTTTGATCTCGTTCCCCGCCGGCGACGTCTTAGTCATCCGGCAC
TTTCATGCTGGCTGTTGCGGGCGGTCGTCCGGTACTTCAACTACCATGTG
ATTGTGGAAGacccctcgtccctccaACCTGCTACGCCGTACATTGGTGC
TCAGAGCCCTCACGGCATTTACCCTATTGCCACAATATGTGGCGCTCCTT
TCAATTCCGCGGTTTTCCCCGGTCAAGACGCCTATTGCCTTGCCGCCTCA
GCCTTGCAATTACAACCTTTTCTCTGGCAGTGGATGGAGTGCCTGGGGGG
GCGGCCCATTTCGGCCGCGGCTATCAAAGAGGTTGTCGACCAAGGCGACG
TGTGCTGCCTCGTGCCCGGGGGAATCGCAGAAATGTTCATGCTGGACAGC
AGCAATCGGACGGAGCAGATCCTCATCCGTCGGGGCTTTGTGCGCGAGGC
GCTGAAGAACGACGTGGACATCGTGCCCATTTACCACTTTAACCACACGC
AGACCTTCAGCTACGTGCTCCCCCCATACCTCAACGCGTGGCTGTCGGTG
GCGTGCCGGAAAACGGGGCTTCCGGGATGCTTTTTGATCGGTAGATGGGG
CTTGTTCGTGCCGCACAAAGTGGATATGTTCACGGTGGTGGGTCGTCCCA
TCCCTGTGCGGGAGCGGATCAGGCAGATGAGGGGTAGGAAAACcaatgga
ggaaaggagggaaagatccCAGGCACTGAGGAGGTAAGAAGCAGGGAGTG
TAGTGTGGTGGAACCTACTGTGGAGGAGATTGAGGCCATAGTTGCCGAGT
ACAAGGAAGCTTTGCGGCGGATCTATTACAACTTTCGGCCTGTGGGATCG
AAACGTGAGTTGATCATGATCGATAATCGAGGAAGCCCTGGTAGCACAGT
GGTGGGTGGGAACAAGGAGGAACAAGAGGGGAAATCGGACGGGTGTGAAC
GAAGCCTGGATCGGTAAATGTATCGCCTTTCAGGCCGGTCATCGTGGGCT
CTTTTGTGGGTGGCTCGTGCATTTAGCACGCGTTCTTCCGACACTCATTC
CTCCCTAAGTATGCCTACAGTGTGGAGGCCTCGATGGCGCCGGCATCAGA
TTGGAGGTACTACGTCGGGAACCGCCACAGCTGCGGGCAGCACAATTGAA
GACTCACAGAACAGGGAAAACAATGAAAGTAGTAGTAGGAACAAACTTGA
TTCGATTCATGACTCCAGTGTCCCTGAGAACCTAGCGGCTtctgaacctc
ctccttcgaaTCCCGTTACTGTCACGCTGGCAGATGTGTGCCCTAACACT
CGCCTAACGCTGCCttggtgggaggaggccctccttttcccgtgCTTCAT
TGTGTTGTGCGCGCCTATCTTCTCTTTTATCATGCTGGGCGTGGCGCTGG
TGCCCATTTTTGGTTGGGCTGGTGCCGTCGTACGgtaccttcccctcctt
tgcaCGTATTGGACGCTACTTTATTTTGATCTCGTTCCCCGCCGGCGACG
TCTTAGTCATCCGGCACTTTCATGCTGGCTGTTGCGGGCGGTCGTCCGGT
ACTTCAACTACCATGTGATTGTGGAAGacccctcgtccctccaACCTGCT
ACGCCGTACATTGGTGCTCAGAGCCCTCACGGCATTTACCCTATTGCCAC
AATATGTGGCGCTCCTTTCAATTCCGCGGTTTTCCCCGGTCAAGACGCCT
ATTGCCTTGCCGCCTCAGCCTTGCAATTACAACCTTTTCTCTGGCAGTGG
ATGGAGTGCCTGGGGGGGCGGCCCATTTCGGCCGCGGCTATCAAAGAGGT
TGTCGACCAAGGCGACGTGTGCTGCCTCGTGCCCGGGGGAATCGCAGAAA
TGTTCATGCTGGACAGCAGCAATCGGACGGAGCAGATCCTCATCCGTCGG
GGCTTTGTGCGCGAGGCGCTGAAGAACGACGTGGACATCGTGCCCATTTA
CCACTTTAACCACACGCAGACCTTCAGCTACGTGCTCCCCCCATACCTCA
ACGCGTGGCTGTCGGTGGCGTGCCGGAAAACGGGGCTTCCGGGATGCTTT
TTGATCGGTAGATGGGGCTTGTTCGTGCCGCACAAAGTGGATATGTTCAC
GGTGGTGGGTCGTCCCATCCCTGTGCGGGAGCGGATCAGGCAGATGAGGG
GTAGGAAAACcaatggaggaaaggagggaaagatccCAGGCACTGAGGAG
GTAAGAAGCAGGGAGTGTAGTGTGGTGGAACCTACTGTGGAGGAGATTGA
GGCCATAGTTGCCGAGTACAAGGAAGCTTTGCGGCGGATCTATTACAACT
TTCGGCCTGTGGGATCGAAACGTGAGTTGATCATGATCGATAATCGAGGA
AGCCCTGGTAGCACAGTGGTGGGTGGGAACAAGGAGGAACAAGAGGGGAA
ATCGGACGGGTGTGAACGAAGCCTGGATCGGTAA

Synonyms

Publications