rna1648, rna1648 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1648
Unique Name	rna1648
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1668
Alignment location	CM002457.1:1156826..1159133 +

Link to JBrowse

Properties


Property Name	Value
Product	nucleolar gtp-binding protein 2
Orig transcript id	gnl\|cribi\|Naga_100071g17.7957.mrna
Orig protein id	gnl\|cribi\|Naga_100071g17.7957
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:1156826..1159133 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100071g17	gene1585	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1648	rna1648-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29039.1	cds1644	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:1156826..1159133+
coding sequence from alignment at CM002457.1:1156826..1159133+

mRNA sequence

>rna1648 ID=rna1648|Name=rna1648|organism=Nannochloropsis gaditana|type=mRNA|length=1668bp
TCCGCGCCCGAATTCATGCATAGCCCACACACAGACAGTGGCCATTAGGT
GCATCATCGTGGATTTTTGTAAAACGAGTGGACGCGCGCCATTGTTTTGA
AAATATGCCGCCTACACGCCTTCTCGGCTTCCTCGCCGTCTGGTTCATTT
CTGCGAACACAGCGCCTGCATTTCACGGACCACGACCGCTGCTGTCTGCG
TCACTTTACCGTTCATTCTTACGTGTCAATGGTTACATGTCCCCGCGGGT
ATGTCCGCGGTCTCACCGGACGGCTGCTCAATCGACGGGGGAAGAAGCCA
CGCCTGAAAAAGACGACCAAGTTGACTACTTCTTCGCAGATGGGTTCTCA
TCCCTTTTGGACGATTCGAAAAATAACGCCGAGCGGGGCCCCAAATCGCC
CTTTGAAGGTGGGCAGACGATCCTTTTGGGAAGTGAAGACGAGCGTGCCC
CCGTGACAGAGCTCCCTCGTCAGGCGACATCTCCGCCTCCTCCACCGATT
TCAAGACGAGGCATTCCACCCTCCCCTTCGTCCGGAGGCTCAGTCAACGA
CAACAAGAGTGGCATGAGGGGCCGTCGGGAAGGAAAGCGTCCGAAACGTT
TTGCCCCGCCTTGGCAGCAAGGTTCCAGCAGCAATTTTGCAGATGGCCCC
GGAGGAAGCGGTCGACGCTCGCGAAGGGCCCCGGGGGGGGCGACAGCGGA
GGGCGGATTCATCCCTTCTTCTCCCCCTCCCTCTGCCGGCGGGGGGCAAG
GACCACAAGGAAATGGCACGCCGCCTCCGACGCGTGTGTATCGCCCCCCG
GGGACCTTCGATTTGGAACCAGGGCGAGGGGGTCGGGGAGGAAGCGGGGG
TGGGGGAAGCGCGCGGGAACGCGAGGACCAGCAGATCTTTCGTCTCCTCA
ACGTGTTTGGCAATCCCAACGGGATGCTCTTTGGGGCAGTTGCCTTAGCT
CTGGGCACGGTGGCGTTTGGATGGGCCTGGAAGAGCGGGGCGTTGGAGAA
TTCCTCGCCGGGACAGGCCATGCTTCAGGACCCAGAGGCGACGGCCTACA
TGTCGAGAGAGGCTTTCCCTCAAGATGTGGACGTGACCGTGACGTTGGAC
GATAAGGTTGTCAATTTGTCGCAGGAGGGTGACGTCGATATTTTGTAAAG
GCCTCGGCAAAGGACCTGTGGTGAGGGCGACGACAGGCCTCCCAGATGGT
GTCATAGGGTACAGGAACCTCCATGGCTGGCGACACTCTCGTGGAGCGGG
ACGTGTTGCGACACTTGCTGTCCCCAGCTGCAGTCAATTTTTGGCGTTGA
AAGCTGATTTCTTTTCTTAGCTTTTTATACATAAAACTGATGTTGATACA
CGCTTTACGGTGGGTAGAAGAGCACACTGATGATAATCCACCGACGCCCC
AGGATTGAAGTTGGGGTTTTCCACGTTATTTAGTGAAATGAGAGTAGATC
TTGAAAAAGGAAAGCCAATGTGTGTCCACTCAGCACCGTGGTGTCCTTAT
TGGGCCTGTCCTACAGTCATCTAGTCACCTCCTCCCGCGCTCCTCTGAAC
ATTGATCTCAAGTTCTTTTCTGCTCCCAAAATTTCGTAGCTTGCCATGTA
ATTTCTCCCGTTCTCACCGAAGAAGAAATCTTTGTAAAACGAAAACGAAT
TGACCACCACATTTTTGA

protein sequence of rna1648

>rna1648-protein ID=rna1648-protein|Name=rna1648|organism=Nannochloropsis gaditana|type=polypeptide|length=663bp
MGKPKGSSLSSSKSSDNPNRKASDVKHKGGKLRDRATINRLQMYRGGKPI
RNKKGKVVGGTLMMKDKVGGQAITGATGRVQPDRRWFGNTRVISQEDLDR
FREEMTTRAADPFSIVLRRKKIPMGLLVDSEKAQRMNLLQTESFQATFGA
KSTRKRPKLSSGVTEAAPRGVPSGNGDYASLLQRVEVEQAKYQAPEHADG
ALVEELDYRVERRHDLFDKGQSRRIWGELYKVIDCSDVVIQVLDARNIPG
TRCAHLERHLKKNASHKHLILIVNKCDLVPAWVVRRWVRLLSQHYPTLAF
HASITNAFGKGSLINLLRQYAKLHQDKKQISVGVVGYPNVGKSSIINTLK
SKKVCKVAPVPGETKVWQYITLMKRIYLIDCPGIVYDTGDDETAIVLKGV
VRAERLPDPTEFVPAILEEVKREYVVRTYGVREWDDAQDFMTKLAKKTGK
LVKGGEPDLNTVAVSLINDFQRGKLPHFVPPPVKEGEEGEEGEEEGGLEV
WAAEAKGQGGVGEREKDEEDNEEEEEEEDEEEEEEEEEEEEEEEEEEEEE
EKEEEEEEDNLAEVEQEKEENDENEKEEEEEVEEVKMADKGKQPRVSGVR
RAKQARGDEGEKTACKTSTRTKGTGRNRSWGRSSMGAFQSSCDTVTDLAE
WCGVRHENEHGCT

mRNA from alignment at CM002457.1:1156826..1159133+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1648 ID=rna1648|Name=rna1648|organism=Nannochloropsis gaditana|type=mRNA|length=2308bp|location=Sequence derived from alignment at CM002457.1:1156826..1159133+ (Nannochloropsis gaditana)
CAGGTCGACCCGAGCTAGACTCACGTCTTCGTACTCACTTCACGCTCATG
ATTCCTGACCAGGTGGCACGCGGTTGTCGGCAGCTTTACTTCCAAGCTTG
TGCTAGCCCCGGCCGAGTcaacctcccgtcctcgctcctATCCATTCAAC
CATGGGGAAGCCGAAAGGAAGCTCTTTgagctcctccaaaagcaGCGACA
ACCCCAACCGCAAAGCTTCAGATGTAAAACACAAAGGCGGGAAGCTGCGA
GACCGCGCCACCATCAATCGTCTCCAAATGtaccggggagggaagcccaT
CCGTAACAAAAAAGGCAAAGTCGTGGGAGGTACGTTAATGATGAAAGACA
AAGTAGGCGGACAAGCCATCACCGGGGCGACGGGGCGCGTGCAGCCCGAC
CGACGGTGGTTTGGAAACACGCGTGTGATCTCCCAGGAGGACCTGGACCG
CTTCCGGGAAGAAATGACAACGCGGGCGGCCGATCCTTTTTCCATCGTGC
TGCGTCGGAAAAAGATTCCCATGGGCCTGCTCGTGGACAGTGAGAAAGCG
CAGCGAATGAATCTGCTGCAAACTGAGAGTTTTCAGGCGACCTTCGGCGC
CAAGTCGACGCGAAAACGTCCGAAACTGTCGTCGGGGGTGACTGAGGCAG
CCCCAAGGGGGGTGCCATCAGGCAATGGGGATTATGCCTCCCTTTTGCAA
CGCGTAGAAGTGGAGCAAGCCAAATACCAGGCACCTGAACACGCCGACGG
GGCCTTGGTGGAAGAGTTGGATTACAGGGTGGAACGACGTCACGATTTGT
TCGACAAGGGGCAGTCCCGTCGGATATGGGGGGAGTTGTACAAAGTGATC
GATTGCTCGGACGTGGTAATCCAGGTGCTGGACGCGCGGAACATTCCTGG
GACAAGGTGCGCGCATTTGGAACGTCATTTAAAAAAGAATGCCAGCCACA
AACACCTGATCCTCATCGTCAACAAGTGCGACCTGGTGCCTGCCTGGGTG
GTCCGACGATGGGTCCGACTGCTCTCTCAGCACTACCCCACCCTGGCCTT
TCACGCCTCTATCACGAACGCGTTCGGAAAGGGGAGTCTGATCAACCTGC
TGCGTCAGTACGCGAAACTGCATCAGGACAAGAAACAGATCTCGGTCGGG
GTGGTGGGGTACCCGAACGTGGGCAAGTCCTCCATCATCAACACCCTTAA
AAGCAAGAAAGTCTGCAAAGTGGCCCCCGTGCCGGGCGAGACCAAGGTCT
GGCAGTACATCACGCTCATGAAGCGCATCTACCTGATCGACTGCCCCGGT
ATCGTCTACGACACGGGGGACGACGAGACGGCCATCGTCTTGAAAGGCGT
GGTGCGGGCGGAGCGCCTGCCCGACCCGACCGAATTTGTTCCCGCCAttt
tggaggaagtgaaAAGGGAGTACGTGGTTCGGACGTACGGGGTGAGGGAA
TGGGATGACGCACAGGATTTCATGACCAAGTTGGCCAAGAAAACGGGCAA
GTtggtcaaggggggggaaccgGACTTGAACACAGTGGCCGTCTCTCTAA
TCAACGACTTTCAGCGAGGCAAACTGCCGCATTTTGTGCCGCCGCctgtc
aaggagggggaagaaggggaggagggggaggaggagggggggttggAGGT
GTGGGCGGCTGAGGCtaaggggcaagggggggtcggggagagggaaaagg
acgaggaggacaatgaggaggaggaggaggaagaggacgaggaggaggaa
gaggaggaggaggaggaagaggaggaggaggaggaggaggaggaggagga
ggagaaggaggaggaggaggaggaggataacCTGGCGGAAGTGgagcaag
agaaggaggaaaatgatgaaaatgaaaaggaggaggaggaggaggtagag
gaggtaaAGATGGCGGATAAGGGAAAGCAGCCACGCGTCTCtggagtgag
gagggcgaagcAGGCAcggggagatgaaggagagaagacagCGTGCAAGA
CGAGCACGAGGACGAGTAAGCACGGTCGGAATGGCTCCGTGCGGCACTCG
GAGACGGcggcaggaaggaaacggagagggggggagaagggaggaggcga
gtgtatgaaggaggaaggcacggCGGTGACTGTTGAGGCGCCGGCGACTT
GGGAAGATTTTTAAGGTGGGATGTGGACAGAAGGGACGGGCCGAAACAGG
TCGTGGGGAAGATCGAGTATGGGAGCCTTCCAGTCGAGTTGTGACACGGT
AACAGACTTGGCTGAATGGTGTGGTGTCCGTCATGAAAACGAGCATGGAT
GCACATGA

Coding sequence (CDS) from alignment at CM002457.1:1156826..1159133+

>rna1648 ID=rna1648|Name=rna1648|organism=Nannochloropsis gaditana|type=CDS|length=3984bp|location=Sequence derived from alignment at CM002457.1:1156826..1159133+ (Nannochloropsis gaditana)
ATGGGGAAGCCGAAAGGAAGCTCTTTgagctcctccaaaagcaGCGACAA
CCCCAACCGCAAAGCTTCAGATGTAAAACACAAAGGCGGGAAGCTGCGAG
ACCGCGCCACCATCAATCGTCTCCAAATGtaccggggagggaagcccaTC
CGTAACAAAAAAGGCAAAGTCGTGGGAGGTACGTTAATGATGAAAGACAA
AGTAGGCGGACAAGCCATCACCGGGGCGACGGGGCGCGTGCAGCCCGACC
GACGGTGGTTTGGAAACACGCGTGTGATCTCCCAGGAGGACCTGGACCGC
TTCCGGGAAGAAATGACAACGCGGGCGGCCGATCCTTTTTCCATCGTGCT
GCGTCGGAAAAAGATTCCCATGGGCCTGCTCGTGGACAGTGAGAAAGCGC
AGCGAATGAATCTGCTGCAAACTGAGAGTTTTCAGGCGACCTTCGGCGCC
AAGTCGACGCGAAAACGTCCGAAACTGTCGTCGGGGGTGACTGAGGCAGC
CCCAAGGGGGGTGCCATCAGGCAATGGGGATTATGCCTCCCTTTTGCAAC
GCGTAGAAGTGGAGCAAGCCAAATACCAGGCACCTGAACACGCCGACGGG
GCCTTGGTGGAAGAGTTGGATTACAGGGTGGAACGACGTCACGATTTGTT
CGACAAGGGGCAGTCCCGTCGGATATGGGGGGAGTTGTACAAAGTGATCG
ATTGCTCGGACGTGGTAATCCAGGTGCTGGACGCGCGGAACATTCCTGGG
ACAAGGTGCGCGCATTTGGAACGTCATTTAAAAAAGAATGCCAGCCACAA
ACACCTGATCCTCATCGTCAACAAGTGCGACCTGGTGCCTGCCTGGGTGG
TCCGACGATGGGTCCGACTGCTCTCTCAGCACTACCCCACCCTGGCCTTT
CACGCCTCTATCACGAACGCGTTCGGAAAGGGGAGTCTGATCAACCTGCT
GCGTCAGTACGCGAAACTGCATCAGGACAAGAAACAGATCTCGGTCGGGG
TGGTGGGGTACCCGAACGTGGGCAAGTCCTCCATCATCAACACCCTTAAA
AGCAAGAAAGTCTGCAAAGTGGCCCCCGTGCCGGGCGAGACCAAGGTCTG
GCAGTACATCACGCTCATGAAGCGCATCTACCTGATCGACTGCCCCGGTA
TCGTCTACGACACGGGGGACGACGAGACGGCCATCGTCTTGAAAGGCGTG
GTGCGGGCGGAGCGCCTGCCCGACCCGACCGAATTTGTTCCCGCCAtttt
ggaggaagtgaaAAGGGAGTACGTGGTTCGGACGTACGGGGTGAGGGAAT
GGGATGACGCACAGGATTTCATGACCAAGTTGGCCAAGAAAACGGGCAAG
TtggtcaaggggggggaaccgGACTTGAACACAGTGGCCGTCTCTCTAAT
CAACGACTTTCAGCGAGGCAAACTGCCGCATTTTGTGCCGCCGCctgtca
aggagggggaagaaggggaggagggggaggaggagggggggttggAGGTG
TGGGCGGCTGAGGCtaaggggcaagggggggtcggggagagggaaaagga
cgaggaggacaatgaggaggaggaggaggaagaggacgaggaggaggaag
aggaggaggaggaggaagaggaggaggaggaggaggaggaggaggaggag
gagaaggaggaggaggaggaggaggataacCTGGCGGAAGTGgagcaaga
gaaggaggaaaatgatgaaaatgaaaaggaggaggaggaggaggtagagg
aggtaaAGATGGCGGATAAGGGAAAGCAGCCACGCGTCTCtggagtgagg
agggcgaagcAGGCAcggggagatgaaggagagaagacagCGTGCAAGAC
GAGCACGAGGACGAAAGGGACGGGCCGAAACAGGTCGTGGGGAAGATCGA
GTATGGGAGCCTTCCAGTCGAGTTGTGACACGGTAACAGACTTGGCTGAA
TGGTGTGGTGTCCGTCATGAAAACGAGCATGGATGCACATGAATGGGGAA
GCCGAAAGGAAGCTCTTTgagctcctccaaaagcaGCGACAACCCCAACC
GCAAAGCTTCAGATGTAAAACACAAAGGCGGGAAGCTGCGAGACCGCGCC
ACCATCAATCGTCTCCAAATGtaccggggagggaagcccaTCCGTAACAA
AAAAGGCAAAGTCGTGGGAGGTACGTTAATGATGAAAGACAAAGTAGGCG
GACAAGCCATCACCGGGGCGACGGGGCGCGTGCAGCCCGACCGACGGTGG
TTTGGAAACACGCGTGTGATCTCCCAGGAGGACCTGGACCGCTTCCGGGA
AGAAATGACAACGCGGGCGGCCGATCCTTTTTCCATCGTGCTGCGTCGGA
AAAAGATTCCCATGGGCCTGCTCGTGGACAGTGAGAAAGCGCAGCGAATG
AATCTGCTGCAAACTGAGAGTTTTCAGGCGACCTTCGGCGCCAAGTCGAC
GCGAAAACGTCCGAAACTGTCGTCGGGGGTGACTGAGGCAGCCCCAAGGG
GGGTGCCATCAGGCAATGGGGATTATGCCTCCCTTTTGCAACGCGTAGAA
GTGGAGCAAGCCAAATACCAGGCACCTGAACACGCCGACGGGGCCTTGGT
GGAAGAGTTGGATTACAGGGTGGAACGACGTCACGATTTGTTCGACAAGG
GGCAGTCCCGTCGGATATGGGGGGAGTTGTACAAAGTGATCGATTGCTCG
GACGTGGTAATCCAGGTGCTGGACGCGCGGAACATTCCTGGGACAAGGTG
CGCGCATTTGGAACGTCATTTAAAAAAGAATGCCAGCCACAAACACCTGA
TCCTCATCGTCAACAAGTGCGACCTGGTGCCTGCCTGGGTGGTCCGACGA
TGGGTCCGACTGCTCTCTCAGCACTACCCCACCCTGGCCTTTCACGCCTC
TATCACGAACGCGTTCGGAAAGGGGAGTCTGATCAACCTGCTGCGTCAGT
ACGCGAAACTGCATCAGGACAAGAAACAGATCTCGGTCGGGGTGGTGGGG
TACCCGAACGTGGGCAAGTCCTCCATCATCAACACCCTTAAAAGCAAGAA
AGTCTGCAAAGTGGCCCCCGTGCCGGGCGAGACCAAGGTCTGGCAGTACA
TCACGCTCATGAAGCGCATCTACCTGATCGACTGCCCCGGTATCGTCTAC
GACACGGGGGACGACGAGACGGCCATCGTCTTGAAAGGCGTGGTGCGGGC
GGAGCGCCTGCCCGACCCGACCGAATTTGTTCCCGCCAttttggaggaag
tgaaAAGGGAGTACGTGGTTCGGACGTACGGGGTGAGGGAATGGGATGAC
GCACAGGATTTCATGACCAAGTTGGCCAAGAAAACGGGCAAGTtggtcaa
ggggggggaaccgGACTTGAACACAGTGGCCGTCTCTCTAATCAACGACT
TTCAGCGAGGCAAACTGCCGCATTTTGTGCCGCCGCctgtcaaggagggg
gaagaaggggaggagggggaggaggagggggggttggAGGTGTGGGCGGC
TGAGGCtaaggggcaagggggggtcggggagagggaaaaggacgaggagg
acaatgaggaggaggaggaggaagaggacgaggaggaggaagaggaggag
gaggaggaagaggaggaggaggaggaggaggaggaggaggaggagaagga
ggaggaggaggaggaggataacCTGGCGGAAGTGgagcaagagaaggagg
aaaatgatgaaaatgaaaaggaggaggaggaggaggtagaggaggtaaAG
ATGGCGGATAAGGGAAAGCAGCCACGCGTCTCtggagtgaggagggcgaa
gcAGGCAcggggagatgaaggagagaagacagCGTGCAAGACGAGCACGA
GGACGAAAGGGACGGGCCGAAACAGGTCGTGGGGAAGATCGAGTATGGGA
GCCTTCCAGTCGAGTTGTGACACGGTAACAGACTTGGCTGAATGGTGTGG
TGTCCGTCATGAAAACGAGCATGGATGCACATGA

Synonyms

Publications