rna1647, rna1647 (mRNA) Nannochloropsis gaditana

Overview
Namerna1647
Unique Namerna1647
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length668
Alignment locationCM002457.1:1154911..1156695 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100071g16.7962.mrna
Orig protein idgnl|cribi|Naga_100071g16.7962
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1154911..1156695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100071g16gene1584Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1647rna1647-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29044.1cds1643Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1647 ID=rna1647|Name=rna1647|organism=Nannochloropsis gaditana|type=mRNA|length=668bp
TTTGTGACGTATAGGCGTCTTGAAACCGCGACAGATTTATACTCACAAAC
ATGTAACTCATTAAGCTTCCTTCTTCTCGGTTCGTAGGCAGAATTTGGAA
CAATAATTATTCATATAATTATTCCATAACGTGCAGCAGGCTGTTTGAGT
ATGACTGATTCGAATTTGTCCTCAAACTCGACACTCAGGCACATTCCTAT
TTCTGTGAACAAGCCCAGTCGTGCCAATTTCAATATTGCTCGCAAAGCAA
TGTTGGAGAGTGCAGATGCGGTTCAATTTTCTGCTTTAGAAAGCGCGATC
GCAATCGCTATAGATGCATCATTTCTCCTCACCCGGGCCAAGATGGCGGA
CGTTGAGCGTATTGAGACCGCGTTTGTGGAAGTTCCTCTACACAGACATC
ATTATCAGGAAGGACAACAGCAGAAAGGTGATCAAGACGGACAATACCAC
GAACGAATGACACGAAAAGCTCGAATGACTATCCGGTTGCATAAAACGGA
ATGCTTTCGGGATTATGCGCATACGCGTCAAGAGCATGTTGATGATGAGG
AAGAATTTGAAGAAGAATACTAGCAATGTCAAGTATACTCGTCCGGCCCA
ATCGGATGCAAGCATCTTGTTTTCAAAGCTCGACGAACAAGGAAACAGGG
AAGCAATTATATAATTGA
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protein sequence of rna1647

>rna1647-protein ID=rna1647-protein|Name=rna1647|organism=Nannochloropsis gaditana|type=polypeptide|length=347bp
MPPTRLLGFLAVWFISANTAPAFHGPRPLLSASLYRSFLRVNGYMSPRVC
PRSHRTAAQSTGEEATPEKDDQVDYFFADGFSSLLDDSKNNAERGPKSPF
EGGQTILLGSEDERAPVTELPRQATSPPPPPISRRGIPPSPSSGGSVNDN
KSGMRGRREGKRPKRFAPPWQQGSSSNFADGPGGSGRRSRRAPGGATAEG
GFIPSSPPPSAGGGQGPQGNGTPPPTRVYRPPGTFDLEPGRGGRGGSGGG
GSAREREDQQIFRLLNVFGNPNGMLFGAVALALGTVAFGWAWKSGALENS
SPGQAMLQDPEATAYMSREAFPQDVDVTVTLDDKVVNLSQEGDVDIL
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mRNA from alignment at CM002457.1:1154911..1156695-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1647 ID=rna1647|Name=rna1647|organism=Nannochloropsis gaditana|type=mRNA|length=1785bp|location=Sequence derived from alignment at CM002457.1:1154911..1156695- (Nannochloropsis gaditana)
TCCGCGCCCGAATTCATGCATAGCCCACACACAGACAGTGGCCATTAGGT
GCATCATCGTGGATTTTTGTAAAACGAGTGGACGCGCGCCATTGTTTTGA
AAATATGCCGCCTACACGCCTTCTCGGCTTCCTCGCCGTCTGGTTCATTT
CTGCGAACACAGCGCCTGCATTTCACGGACCACGACCGCTGCTGTCTGCG
TCACTTTACCGTTCATTCTTACGTGTCAATGGTTACATGTCCCCGCGGGT
ATGTCCGCGGTCTCACCGGACGGCTGCTCAATCGACGGGGGAAGAAGCCA
CGCCTGAAAAAGACGACCAAGTTGACTACTTCTTCGCAGGTACATGTTCG
TAGCTGAAAATCTCACACTTACACGTGTCATACCTCACTCGGATGGCAAC
ATTATCGTATTTGTGCACTTGACTCATGGAGCGAAATTTTCACCCGTACC
TCCTAGATGGGTTCTCATCCCTTTTGGACGATTCGAAAAATAACGCCGAG
CGGGGCCCCAAATCGCCCTTTGAAGGTGGGCAGACGATCCTTTTGGGAAG
TGAAGACGAGCGTGCCCCCGTGACAGAGCTCCCTCGTCAGGCGACATCTC
CGCCTCCTCCACCGATTTCAAGACGAGGCATTCCACCCTCCCCTTCGTCC
GGAGGCTCAGTCAACGACAACAAGAGTGGCATGAGGGGCCGTCGGGAAGG
AAAGCGTCCGAAACGTTTTGCCCCGCCTTGGCAGCAAGGTTCCAGCAGCA
ATTTTGCAGATGGCCCCGGAGGAAGCGGTCGACGCTCGCGAAGGGCCCCG
GGGGGGGCGACAGCGGAGGGCGGATTCATCCCTTCTTCTCCCCCTCCCTC
TGCCGGCGGGGGGCAAGGACCACAAGGAAATGGCACGCCGCCTCCGACGC
GTGTGTATCGCCCCCCGGGGACCTTCGATTTGGAACCAGGGCGAGGGGGT
CGGGGAGGAAGCGGGGGTGGGGGAAGCGCGCGGGAACGCGAGGACCAGCA
GATCTTTCGTCTCCTCAACGTGTTTGGCAATCCCAACGGGATGCTCTTTG
GGGCAGTTGCCTTAGCTCTGGGCACGGTGGCGTTTGGATGGGCCTGGAAG
AGCGGGGCGTTGGAGAATTCCTCGCCGGGACAGGCCATGCTTCAGGACCC
AGAGGCGACGGCCTACATGTCGAGAGAGGCTTTCCCTCAAGATGTGGACG
TGACCGTGACGTTGGACGATAAGGTTGTCAATTTGTCGCAGGAGGGTGAC
GTCGATATTTTGTAAAGGCCTCGGCAAAGGACCTGTGGTGAGGGCGACGA
CAGGCCTCCCAGATGGTGTCATAGGGTACAGGAACCTCCATGGCTGGCGA
CACTCTCGTGGAGCGGGACGTGTTGCGACACTTGCTGTCCCCAGCTGCAG
TCAATTTTTGGCGTTGAAAGCTGATTTCTTTTCTTAGCTTTTTATACATA
AAACTGATGTTGATACACGCTTTACGGTGGGTAGAAGAGCACACTGATGA
TAATCCACCGACGCCCCAGGATTGAAGTTGGGGTTTTCCACGTTATTTAG
TGAAATGAGAGTAGATCTTGAAAAAGGAAAGCCAATGTGTGTCCACTCAG
CACCGTGGTGTCCTTATTGGGCCTGTCCTACAGTCATCTAGTCACCTCCT
CCCGCGCTCCTCTGAACATTGATCTCAAGTTCTTTTCTGCTCCCAAAATT
TCGTAGCTTGCCATGTAATTTCTCCCGTTCTCACCGAAGAAGAAATCTTT
GTAAAACGAAAACGAATTGACCACCACATTTTTGA
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Coding sequence (CDS) from alignment at CM002457.1:1154911..1156695-

>rna1647 ID=rna1647|Name=rna1647|organism=Nannochloropsis gaditana|type=CDS|length=2088bp|location=Sequence derived from alignment at CM002457.1:1154911..1156695- (Nannochloropsis gaditana)
ATGGGTTCTCATCCCTTTTGGACGATTCGAAAAATAACGCCGAGCGGGGC
CCCAAATCGCCCTTTGAAGGTGGGCAGACGATCCTTTTGGGAAGTGAAGA
CGAGCGTGCCCCCGTGACAGAGCTCCCTCGTCAGGCGACATCTCCGCCTC
CTCCACCGATTTCAAGACGAGGCATTCCACCCTCCCCTTCGTCCGGAGGC
TCAGTCAACGACAACAAGAGTGGCATGAGGGGCCGTCGGGAAGGAAAGCG
TCCGAAACGTTTTGCCCCGCCTTGGCAGCAAGGTTCCAGCAGCAATTTTG
CAGATGGCCCCGGAGGAAGCGGTCGACGCTCGCGAAGGGCCCCGGGGGGG
GCGACAGCGGAGGGCGGATTCATCCCTTCTTCTCCCCCTCCCTCTGCCGG
CGGGGGGCAAGGACCACAAGGAAATGGCACGCCGCCTCCGACGCGTGTGT
ATCGCCCCCCGGGGACCTTCGATTTGGAACCAGGGCGAGGGGGTCGGGGA
GGAAGCGGGGGTGGGGGAAGCGCGCGGGAACGCGAGGACCAGCAGATCTT
TCGTCTCCTCAACGTGTTTGGCAATCCCAACGGGATGCTCTTTGGGGCAG
TTGCCTTAGCTCTGGGCACGGTGGCGTTTGGATGGGCCTGGAAGAGCGGG
GCGTTGGAGAATTCCTCGCCGGGACAGGCCATGCTTCAGGACCCAGAGGC
GACGGCCTACATGTCGAGAGAGGCTTTCCCTCAAGATGTGGACGTGACCG
TGACGTTGGACGATAAGGTTGTCAATTTGTCGCAGGAGGGTGACGTCGAT
ATTTTGTAAATGCCGCCTACACGCCTTCTCGGCTTCCTCGCCGTCTGGTT
CATTTCTGCGAACACAGCGCCTGCATTTCACGGACCACGACCGCTGCTGT
CTGCGTCACTTTACCGTTCATTCTTACGTGTCAATGGTTACATGTCCCCG
CGGGTATGTCCGCGGTCTCACCGGACGGCTGCTCAATCGACGGGGGAAGA
AGCCACGCCTGAAAAAGACGACCAAGTTGACTACTTCTTCGCAGATGGGT
TCTCATCCCTTTTGGACGATTCGAAAAATAACGCCGAGCGGGGCCCCAAA
TCGCCCTTTGAAGGTGGGCAGACGATCCTTTTGGGAAGTGAAGACGAGCG
TGCCCCCGTGACAGAGCTCCCTCGTCAGGCGACATCTCCGCCTCCTCCAC
CGATTTCAAGACGAGGCATTCCACCCTCCCCTTCGTCCGGAGGCTCAGTC
AACGACAACAAGAGTGGCATGAGGGGCCGTCGGGAAGGAAAGCGTCCGAA
ACGTTTTGCCCCGCCTTGGCAGCAAGGTTCCAGCAGCAATTTTGCAGATG
GCCCCGGAGGAAGCGGTCGACGCTCGCGAAGGGCCCCGGGGGGGGCGACA
GCGGAGGGCGGATTCATCCCTTCTTCTCCCCCTCCCTCTGCCGGCGGGGG
GCAAGGACCACAAGGAAATGGCACGCCGCCTCCGACGCGTGTGTATCGCC
CCCCGGGGACCTTCGATTTGGAACCAGGGCGAGGGGGTCGGGGAGGAAGC
GGGGGTGGGGGAAGCGCGCGGGAACGCGAGGACCAGCAGATCTTTCGTCT
CCTCAACGTGTTTGGCAATCCCAACGGGATGCTCTTTGGGGCAGTTGCCT
TAGCTCTGGGCACGGTGGCGTTTGGATGGGCCTGGAAGAGCGGGGCGTTG
GAGAATTCCTCGCCGGGACAGGCCATGCTTCAGGACCCAGAGGCGACGGC
CTACATGTCGAGAGAGGCTTTCCCTCAAGATGTGGACGTGACCGTGACGT
TGGACGATAAGGTTGTCAATTTGTCGCAGGAGGGTGACGTCGATATTTTG
TAAATGCCGCCTACACGCCTTCTCGGCTTCCTCGCCGTCTGGTTCATTTC
TGCGAACACAGCGCCTGCATTTCACGGACCACGACCGCTGCTGTCTGCGT
CACTTTACCGTTCATTCTTACGTGTCAATGGTTACATGTCCCCGCGGGTA
TGTCCGCGGTCTCACCGGACGGCTGCTCAATCGACGGGGGAAGAAGCCAC
GCCTGAAAAAGACGACCAAGTTGACTACTTCTTCGCAG
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Synonyms
Publications