rna1646, rna1646 (mRNA) Nannochloropsis gaditana

Overview
Namerna1646
Unique Namerna1646
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1959
Alignment locationCM002457.1:1154240..1154907 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100071g15.7952.mrna
Orig protein idgnl|cribi|Naga_100071g15.7952
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1154240..1154907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100071g15gene1583Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1646rna1646-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29034.1cds1642Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1646 ID=rna1646|Name=rna1646|organism=Nannochloropsis gaditana|type=mRNA|length=1959bp
ATGCCTCCTGCGGCGTCTGCTACTTTTCGCGCGAGCAGTAGCGGAGGAAC
CACGGCAGTGGAAACAAGCGGGATGGCGGACGAGGAACGCGCGCCGTTGC
ATCGACGCTTGCATGTTTTGCAAAGCAAACTGGCACTGTTGGGGTACAAG
GACGTGGTAGGAACGGATTCAATAGAGCTGGTGGAGAAGCTGTTCGATGA
TTTGGTGGCCACGTCAGAAAGCTATGAACGCTTGCAGCACAGGGAAGACC
TCCTGTCTCACGACCTAGCTCTTTCTCAGGACCAGATCCTCCCCCTTCGC
AAGACGATTGCGCGTCTGACCCGGGAAAACAACGATCTCCACAGCCAAGT
CTTGCATGCGGTGCGCGCGGTGGATAAAAAAGAGGTTGAATGGAAAAGGG
AAATGGCCGCTGTCCAAGGGGATCTGGTGGCCACCCAGGACCTGTTGCAG
GAGAAGGAAATGGCATGCCGGGCGGAACGACGGAAAGTGCGGCAGCTCCA
GGTGCAAGCCAAGCGGCTGAGAGCCGCATTCAGTGGCGAAGATCGTGGGG
GGTCGCGCACGACTACATCGTTCCCCTTCGGAGAGGAAATTGCGGGGGCA
AGCGAGGAAGGAGCAGGGCTCGATGACGCGGAGGAGGAGGGCGAGGAGGA
GGAGGAGGAGGAGGAGAAGGAGGATGTCGGGCAGGGTAGCACATTCCTGG
CGATGGAACGCCGCGTGCAGGACCAAGAGTTGGAGGCAGTCATGCGGGAC
AGCGTCAGGGAGAAGGACGCCTACCACGAAGCCTTGGCGCGTTTGGAAGT
GGCGCGGGCAGAACTGGCGCGGAAGGAGGAACAGGTGGAGCAATTCAAGA
GCTTGTTTGACCAATTGCACACGGGAAGGGACCAAATCAATGTGCGCCTG
CAGCAATCCTACGCAGAGATTACGGCGGCGGAGGAACGGGAAAGGGAAGC
GAAGGACAAGGCGCAGCGACTGGACCGTCGGGTGGCGGAGAAGGAAGAAG
AGGTGGAGAAATTGCAGCGGCTGATCAGGGAAATGGAGGAGGAGCGACAG
GCCTTGCAAGGTCGGCTAGAGCAGGCCGAAGAAACGGAGACCGTCTGGAA
AAGGGAGCAAGCTCAGTATGAGCGGACGTTGCGTCGAATGGAGGGAGACT
TGGAGGAGGAGGGCCGGCAACGGGAAGCGGCGCGGGAGGCTTTGGCTGGC
AAAGAGAAGGAGGGAAGGGTCCTGGAGCGGAAGATGGCGGGGTTGGAGAT
GGAGGCAGGGGCGGCCAAAAAAATGGTGCACAGCCGTCTGTTGGAAATCA
GGGCTTTGCGGGACGATTTGATGATCATGACCCGGGAAGCCCAAGCCACG
CAGGGCCAGCTCCAGCGGGCGGAACGGGAGAGGGAGGAGTACCGGCAGGT
GGTGGAGGAGTCGCGGATCCGAGCGGAGGAGGCAGAGGGATCGCTTCGAG
GGATGGAGGCAGAGAGGAACGACCTGCTGGGTTCCTACAAGGCTGCTCAG
GAAGAAGTAAGTCGCCTCACCTACAACTTGAACCAGCTTGGGCGGGCGCA
GCGGGAGCAGCAGGTGGCCTTGGGTCAGACAAGGGCTGCCTTGTTGTCGA
TGGAAAAAGATTTGGTGCAGGAGCGACGGGAGAAAGCCCAGACGTTGGCT
CATGCTGCGGAGATGTCCGCTGAGGGGGAGAGAGGAAGGTCGGGCGGATT
TCAACAACAGCAGTCCCAGATGCCCACCCTGCGGGAGTATGAAAGGCAGC
CGAGGCAGGACCTTGAAGCTCGACAGCAACCGCAGCAGCGCCTGAGCGAG
CTGTATCCTGCCGAAGCCAGCGAAATTATGGGGGAGGCCGAGGGAGGAGG
AGGTAGCAACAGCGAAAATGACATTTCTACAAGCTCACTGGAGGAGTTCT
TGGCATCAAGGGATGCTGGCGAGGGACAGGACAGAGACGACTCATCGACA
TCGGCATAA
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protein sequence of rna1646

>rna1646-protein ID=rna1646-protein|Name=rna1646|organism=Nannochloropsis gaditana|type=polypeptide|length=140bp
MTDSNLSSNSTLRHIPISVNKPSRANFNIARKAMLESADAVQFSALESAI
AIAIDASFLLTRAKMADVERIETAFVEVPLHRHHYQEGQQQKGDQDGQYH
ERMTRKARMTIRLHKTECFRDYAHTRQEHVDDEEEFEEEY
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mRNA from alignment at CM002457.1:1154240..1154907+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1646 ID=rna1646|Name=rna1646|organism=Nannochloropsis gaditana|type=mRNA|length=668bp|location=Sequence derived from alignment at CM002457.1:1154240..1154907+ (Nannochloropsis gaditana)
TTTGTGACGTATAGGCGTCTTGAAACCGCGACAGATTTATACTCACAAAC
ATGTAACTCATTaagcttccttcttctcggtTCGTAGGCAGAATTTGGAA
CAATAATTATTCATATAATTATTCCATAACGTGCAGCAGGCTGTTTGAGT
ATGACTGATTCGAATTTGTCCTCAAACTCGACACTCAGGCACATTCCTAT
TTCTGTGAACAAGCCCAGTCGTGCCAATTTCAATATTGCTCGCAAAGCAA
TGTTGGAGAGTGCAGATGCGGTTCAATTTTCTGCTTTAGAAAGCGCGATC
GCAATCGCTATAGATGCATCATTTCTCCTCACCCGGGCCAAGATGGCGGA
CGTTGAGCGTATTGAGACCGCGTTTGTGGAAGTTCCTCTACACAGACATC
ATTATCAGGAAGGACAACAGCAGAAAGGTGATCAAGACGGACAATACCAC
GAACGAATGACACGAAAAGCTCGAATGACTATCCGGTTGCATAAAACGGA
ATGCTTTCGGGATTATGCGCATACGCGTCAAGAGCATgttgatgatgagg
aagaattTGAAGAAGAATACTAGCAATGTCAAGTATACTCGTCCGGCCCA
ATCGGATGCAAGCATCTTGTTTTCAAAGCTCGACGAACAAGGAAACAGGG
AAGCAATTATATAATTGA
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Coding sequence (CDS) from alignment at CM002457.1:1154240..1154907+

>rna1646 ID=rna1646|Name=rna1646|organism=Nannochloropsis gaditana|type=CDS|length=423bp|location=Sequence derived from alignment at CM002457.1:1154240..1154907+ (Nannochloropsis gaditana)
ATGACTGATTCGAATTTGTCCTCAAACTCGACACTCAGGCACATTCCTAT
TTCTGTGAACAAGCCCAGTCGTGCCAATTTCAATATTGCTCGCAAAGCAA
TGTTGGAGAGTGCAGATGCGGTTCAATTTTCTGCTTTAGAAAGCGCGATC
GCAATCGCTATAGATGCATCATTTCTCCTCACCCGGGCCAAGATGGCGGA
CGTTGAGCGTATTGAGACCGCGTTTGTGGAAGTTCCTCTACACAGACATC
ATTATCAGGAAGGACAACAGCAGAAAGGTGATCAAGACGGACAATACCAC
GAACGAATGACACGAAAAGCTCGAATGACTATCCGGTTGCATAAAACGGA
ATGCTTTCGGGATTATGCGCATACGCGTCAAGAGCATgttgatgatgagg
aagaattTGAAGAAGAATACTAG
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Synonyms
Publications