rna1644, rna1644 (mRNA) Nannochloropsis gaditana

Overview
Namerna1644
Unique Namerna1644
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length453
Alignment locationCM002457.1:1147024..1147711 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100071g13.7946.mrna
Orig protein idgnl|cribi|Naga_100071g13.7946
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1147024..1147711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100071g13gene1581Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1644rna1644-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29028.1cds1640Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1644 ID=rna1644|Name=rna1644|organism=Nannochloropsis gaditana|type=mRNA|length=453bp
ATGGTCATCCAGCAGGGGAAGTTTCCCGCCACCGAGGTCTTCCGCACCCA
GGGTCGTGGGTGGGCGCTCCGGACGCGGGAAGAGGTGGAGAAAGGGACGC
TTTTGATCGAGTACCGGGGGGAGGTGGTGACCATGGAGGAGGCACAGACC
CGAATGCGGTCCATGTCGGCCGGCCAAGACTACTACTTCGCCGCGTTGGA
GGGGGAGCTGGTCCTGGACGCGGGGCCCATGGGCTCGGAAGCCCGCTTTG
CCAACCACAGCTGTGCGCCGAACTGCGTGCTGCAGAAGTGGAGGGCGGGG
GGGGAGGCGCATATCCTTTTGGTTGCGGCCCGGCGGTTGGGGGCAGGGGA
GGAGGTGACTTACAACTACCAGGTGGACACATTGGCGGGCATGTTCGGGA
AGCAAGCCTGTCGATGCGGGGCGAAGAATTGCATCCGTGTCCTCTGGCCG
TGA
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protein sequence of rna1644

>rna1644-protein ID=rna1644-protein|Name=rna1644|organism=Nannochloropsis gaditana|type=polypeptide|length=189bp
MRQYVELRGNQGAWWSGGRSGQEEFDAPVTSVEVSNITEESSSGRMSTSE
VKRQKEDVEANTERCPGRISSSRAQPSHHFQDQGTFLSEPARVFDQHHYA
KPPTPSPFPYTLLPSTLADSLLQPRLPHSMELPTKSTVHLLAQLERTKSV
RETDPSAPASSSFQAPVMDMFSPDILSILRPADALTEGK
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mRNA from alignment at CM002457.1:1147024..1147711+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1644 ID=rna1644|Name=rna1644|organism=Nannochloropsis gaditana|type=mRNA|length=688bp|location=Sequence derived from alignment at CM002457.1:1147024..1147711+ (Nannochloropsis gaditana)
ATGCGACAATACGTCGAGCTGCGAGGCAATCAAGGGGCCTGGTGGTCGGG
GGGCAGATCAGGCCAAGAGGAATTCGACGCTCCTGTTACTAGCGTCGAGG
TTAGCAATATCACGGAGGAGAGCTCGAGTGGGAGGATGAGTACGAGCGAA
GTGAAGCGCCagaaggaagacgtggaggcgaACACGGAGCGATGCCCAGG
CCGCATATCATCGTCTCGCGCACAGCCTTCGCACCATTTCCAGGATCAAG
GCACATTTTTAAGCGAACCTGCGCGTGTCTTTGACCAGCATCACTATGCA
AAGCCCCCaactccctcgcctttcccctACACTCTTTTGCCGTCGACTCT
TGCAGACTCATTGCTGCAGCCACGACTTCCACATTCCATGGAGCTGCCCA
CAAAATCAACCGTGCATCTGCTTGCTCAACTGGAAAGAACAAAATCTGTG
CGGGAGACGGATCCTTCAGCCCCTGCATCGTCTAGCTTTCAAGCTCCTGT
GATGGATATGTAGCCACCAAAGCAAACGCTCGTGCGCTTGGAGGAACGCA
TCCAAGCCTAGCAACAGGAATGGCGGCCGCAAAACTTGGCCCGAGTTATT
TAAACAGGACCTCGCGATCCTCTTAAGGTTTTCCCCTGATATCCTCTCTA
TCTTAAGACCAGCAGATGCGCTAACGGAGGGCAAATAA
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Coding sequence (CDS) from alignment at CM002457.1:1147024..1147711+

>rna1644 ID=rna1644|Name=rna1644|organism=Nannochloropsis gaditana|type=CDS|length=1140bp|location=Sequence derived from alignment at CM002457.1:1147024..1147711+ (Nannochloropsis gaditana)
ATGCGACAATACGTCGAGCTGCGAGGCAATCAAGGGGCCTGGTGGTCGGG
GGGCAGATCAGGCCAAGAGGAATTCGACGCTCCTGTTACTAGCGTCGAGG
TTAGCAATATCACGGAGGAGAGCTCGAGTGGGAGGATGAGTACGAGCGAA
GTGAAGCGCCagaaggaagacgtggaggcgaACACGGAGCGATGCCCAGG
CCGCATATCATCGTCTCGCGCACAGCCTTCGCACCATTTCCAGGATCAAG
GCACATTTTTAAGCGAACCTGCGCGTGTCTTTGACCAGCATCACTATGCA
AAGCCCCCaactccctcgcctttcccctACACTCTTTTGCCGTCGACTCT
TGCAGACTCATTGCTGCAGCCACGACTTCCACATTCCATGGAGCTGCCCA
CAAAATCAACCGTGCATCTGCTTGCTCAACTGGAAAGAACAAAATCTGTG
CGGGAGACGGATCCTTCAGCCCCTGCATCGTCTAGCTTTCAAGCTCCTGT
GATGGATATGTTTTCCCCTGATATCCTCTCTATCTTAAGACCAGCAGATG
CGCTAACGGAGGGCAAATAAATGCGACAATACGTCGAGCTGCGAGGCAAT
CAAGGGGCCTGGTGGTCGGGGGGCAGATCAGGCCAAGAGGAATTCGACGC
TCCTGTTACTAGCGTCGAGGTTAGCAATATCACGGAGGAGAGCTCGAGTG
GGAGGATGAGTACGAGCGAAGTGAAGCGCCagaaggaagacgtggaggcg
aACACGGAGCGATGCCCAGGCCGCATATCATCGTCTCGCGCACAGCCTTC
GCACCATTTCCAGGATCAAGGCACATTTTTAAGCGAACCTGCGCGTGTCT
TTGACCAGCATCACTATGCAAAGCCCCCaactccctcgcctttcccctAC
ACTCTTTTGCCGTCGACTCTTGCAGACTCATTGCTGCAGCCACGACTTCC
ACATTCCATGGAGCTGCCCACAAAATCAACCGTGCATCTGCTTGCTCAAC
TGGAAAGAACAAAATCTGTGCGGGAGACGGATCCTTCAGCCCCTGCATCG
TCTAGCTTTCAAGCTCCTGTGATGGATATGTTTTCCCCTGATATCCTCTC
TATCTTAAGACCAGCAGATGCGCTAACGGAGGGCAAATAA
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Synonyms
Publications