rna1626, rna1626 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1626
Unique Name	rna1626
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2191
Alignment location	CM002457.1:1094051..1097191 +

Link to JBrowse

Properties


Property Name	Value
Product	aarF domain-containing protein kinase
Orig transcript id	gnl\|cribi\|Naga_100024g8.4356.mrna
Orig protein id	gnl\|cribi\|Naga_100024g8.4356
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:1094051..1097191 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100024g8	gene1563	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1626	rna1626-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29098.1	cds1622	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:1094051..1097191+
coding sequence from alignment at CM002457.1:1094051..1097191+

mRNA sequence

>rna1626 ID=rna1626|Name=rna1626|organism=Nannochloropsis gaditana|type=mRNA|length=2191bp
GGACGGTGTTGTGGACGGCGGTGGGTCGCAAGCGCCGGACTGACTTCTCA
GCCTGGCTTTCTTCGTGCTGTAATATTTCCTTCGTCGACGTGATTGTGGG
CTGCTTAAATGCCACGAATAAAATTTTTTTCTACGCCCCTTCTGACCATA
TATTTTGCCCTTCAAGCCTTTCAACGGTCTTCTTCTTTGATAATACCTCT
GGAAAGACGTCAACCTGCGGCATCAGTGTCTCCCTTCTTTCCTCTTTCAC
AAGACAAAAGTTCTTCGTCAGGAACTATTCCAACGCACCTCCAAGCTTTT
GTTCCTGGACTGCCGGCCTATTTCGCGCGCCTTTCGTTCGGCAATGACGC
CCAAGCCATCGACGTCCTAGTTGACACGGGAAGTTTCGACCTGCTTATCC
CGTCCGACCTTTGCACAGCCTGTTCGCACGTCTCACAACGCCTAAACGTG
GCCTCTGCAGGCGTGGATTTTGTCCATTGCGGCGACGCTATGCGCTGCCA
TGGGCAATGCATGCCTGATGTGCTGAATTCATTTGGTAGCACAAGCCAGA
CTATCCCCCCACAGCTCTATTGCGGGCCGCACGGAGGGATCTGTGAGGCA
GGAAGCAACCTCTGTCTTTTCGATGATAACTATGCAGATGGATCCTACGC
TAGCGGTGTGGTTGTCACTGCCCCTTCCGTAAATTTCTCGGGCGTGACGC
TGAAAGACGTGACGTTCGGGGCCATTGCATCGGCAAGCGATACCTTTTTC
GAAGCTCCCCAGGGCGGAGGGATTATGGGGATGGCCTATCGAGGCTCGGC
GGTCAGTACCAGGGCCAACGCGCGGGGCAATTTAGATCAGCCTGTAACCA
AGAAAGATGTTGTCGGTTGTGACGGGGAAACCCCGTGTATGGTGCCCCTC
TTGGATGCTCTGATTGCACAGCAGGAGCAGGGGGTGGGTGGTCAAGTCCG
GGATATTTTTGCGATTTATGGCCATCCAACCTCGCCGGTGATGCTTCTGG
GTGAGAGCAGCCTAGGAATAGAATCCCAAGAATACTACGAGGGAGAGCTA
CAGTATGCTCGTATGGAGGCCCCCTATGGACTCTACATGGTGGGGGTTGC
CGGGCTGGGGGTGGTGGAAGCGCCGGGGATGGACGTGCCCAAAGGAGTAG
CGGAGGCGGGCTCCACATTCATGCTCCATCAAGGGAACGCCGGTCTGGCC
ATCATTGATACGGGCGCCACGGGGTTATATTTCCCTTGCTCGGCATATCT
CAAGCTCAAGACGTATCTGCAGACGCACTACTGTCATGTCCCCTTCATTT
GTGGGCCCCTGCCGACGCCCACCCCCGAACTTTCTGACAGCGAGGCCGCA
GCCGTCAAGGGAAAGCAGCAAGAGAGGGATCATTCACATCGAGCCCTTCG
GAGTCGCCGCCACCATCGCCATCACCAACAGCCTTCCCAGGAGGAGGCGC
AGGAAGAGGATGAGCCCCCCCCCTCGACGATCTTCGAGTCCAACATATGG
GCCAAGTACGACGAGGCTACCGTGGCGCGCTTGCCGACACTGACCATTCG
CTTGGAAGATGGGGGAATTGAGCTACGCTTGTCGCCGCAACAGTACTTGA
TACGGAATGTCATGCTGAGCGGGGTGACGGGGATGGACGGACAAGAAAAG
ACGGACATTGCTTATTACCAGTTTGGTATCAGGACATTCGGAGAAGGCGT
TGCGGGTGGATCGCAAAGGAGGCGCATGGTCTCTGATCAAGCCAGTAGGA
AATCTGAGCGCGGTCCAGAGGCTTTTCAGCGCGAAAAATACGAAGGGATG
CTGCCGGGCACGAGCATTACAAGAGATGGCACTCACAGAGGGTCCGTCCG
CCCCAACAAAAACAATGGATCCCCCCGGGAGCTATATATTTTGGGTGAAT
TGCTCTTGAACCAAATGTTTGTCGTCTTCGATAGAGATAAGAGACGGGTG
GGGTTCGCTCCCGCAGCTGCTCGCGATCCATCGCTCAAACCCTCATCTCC
AGAGTTCGTGGTCGTTCCGCCGGGCAATGGGACGGCAAATACAAATGTGT
AAAGCAACATGCCTAGTCAAAGCCAAAAGAATATATAAGGACAGCGAAAA
TCTCTTCAGCCAGGATGGTGACGCTGTGCCTCCCGGGAACAAGGTGGATA
AAGAGATCGCTCCAAGCATGAAAAAGGGTTAACTTTACGAG

protein sequence of rna1626

>rna1626-protein ID=rna1626-protein|Name=rna1626|organism=Nannochloropsis gaditana|type=polypeptide|length=737bp
MSKSIGKGCARRRLFYLFTLGALCRRGDGSLETTHSFHASSSKPSSPSAW
KEHEAEQHPLRRQQKEPQIRPASAVGKCNSPSSMKSTTSSLPSRGGAGGA
ASPTGAPVHVQDTEMKKLLKRGQLQATGFDKEKDHEASMDGSGDSPSRFA
LVRRGLYLLYLFSAAILTALLALVSERFRSPYWYRMITCAISQAGAAFIK
WGQWASARPDIFPEEFCSTLAMLHSFAPTHSFAFTKQAIEEAFARPLEEV
FEAFDPDPIASGSIAQVHAAVMKGRRVAVKVRHPGVAAQIDIDFRVMKKV
ASLADMIPALKFLNLGHSMEQFSHTLASQTKLDVEGRHLLLLNHNFRKWR
SSLRFPEPLVLSEGVLVESWEEGVIISDFIARYSRWRELEAQGCQMCGQV
FGAYTHLRLFIQDTLLLPIKPLVDAWKMDAARKRMEAEKAADVQAEAAAE
EAVAGRPVEGQGDAAASLAELKNAKNRRRAPLSVELAHFIVSTGEDLYLK
MLLVDNLMHADLHPGNILIHVNRNGRPVLTLVDAGMVAKLSDVERANFIG
LLESMGRGDGARAARHVLGFSLTQTCVGEDATAFEQEMWEVFALHCRGYN
TDVSIGVVLREVLALVRKFHVRVDVNYATLLINLLCLEGMAAALLPSYNI
LDRAKPLLVPHSNKLLRPFFRRIYPLLLGFKRRGESALFNLLKKTGNVQQ
PHAPLAIGSGSDDSSTKDSSSFLPADRHAPRIKSPVG

mRNA from alignment at CM002457.1:1094051..1097191+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1626 ID=rna1626|Name=rna1626|organism=Nannochloropsis gaditana|type=mRNA|length=3141bp|location=Sequence derived from alignment at CM002457.1:1094051..1097191+ (Nannochloropsis gaditana)
AAGGGCAACTTACGTCTGGTTCAGGAGTCGTGGCGAGTCACTCTTAGACA
ACGGTCAAAAGTACCGGCTCATGTGCTCGAAGAAGTTTTGGGTGAAGTAT
CGTATGGACAGCCGCAATTTTTTTCTCTTGACCTCCCTCTGTCCACACCT
TGTCCCCgtgcccctcgctcccgccctcgtcatACTGAAAAACCTGTCTG
GGGTATGCGACGACCGACAAGCGGACTCTCGCCGTCTTATTGAAAGGGGT
TGGACACGTCCCAGCATCTGGTGCATCTTCTGTAATTGGAGCTCTCGACC
TGAAATTATAACGACTCACGCATCTTATGCATTTTATGAcagcagggagg
agtgaCCTGCCAGGATTTTATTTCCCTCAACAAGTGTAATAAGCAGGAAG
CCACGCACGCACGGAACTCCTCCGTGTAGATGAGCAAATCAATCGGCAAG
GGATGCGCCCGTAGACGCCTTTTCTATCTCTTTACTCTAGGCGCGTTGTG
TCGGCGTGGCGATGGCAGCCTCGAGACAACCCATTCCTTccacgcctcct
cgtccaagccATCGTCTCCGTCAGCTTGGAAGGAGCACGAAGCGGAGCAG
CACCCGCTTCGACGGCAACAGAAGGAACCACAAATAAGACCAGCGTCAGC
GGTTGGGAAATGCAATTCGCCCTCATCCATGAAATCGACAACGTCGTCCC
TACCCTCCCGCGGTGGtgcgggaggggcagcgagCCCGACCGGCGCGCCG
GTGCACGTCCAAGACACGGAGATGAAAAAGCTTTTGAAGCGCGGTCAGTT
GCAAGCTACTGGTTTCGACAAAGAAAAGGATCATGAGGCGTCCATGGATG
GAAGCGGAGACAGCCCTTCCCGCTTCGCCCTCGTGCGACGGGGTCTCTAt
ctcctctacctcttcaGTGCCGCCATCCTgactgccctcctcgccctcgt
ttCCGAACGCTTCCGCAGCCCATATTGGTACAGAATGATTACTTGTGCCA
TATCCCAGGCAGGGGCTGCTTTTATCAAGTGGGGCCAGTGGGCCTCGGCC
CGGCCTGACATCTTTCCCGAGGAATTTTGCAGCACACTCGCCATGCTGCA
CTCTTTCGCCCCGACCCATTCCTTTGCCTTCACGAAGCAAGCGATCGAGG
AAGCCTTCGCGCGCCCTTTGGAGGAGGTCTTCGAAGCTTTCGACCCGGAT
CCCATAGCCTCGGGAAGCATCGCCCAAGTGCACGCGGCGGTGATGAAAGG
ACGCCGGGTGGCTGTGAAAGTGCGCCATCCGGGGGTAGCGGCACAGATCG
ACATCGACTTCCGGGTTATGAAGAAGGTGGCAAGCCTTGCAGATATGATT
CCTGCCTTGAAATTCTTGAATCTGGGGCACAGCATGGAGCAATTTTCCCA
CACGCTGGCCAGTCAGACCAAGCTCGACGTGGAGGGGCGGCATCTCCTGC
TTCTGAACCACAATTTCCGGAAGTGGCGCTCTTCCTTACGTTTTCCGGAG
CCTTTGGTGCTGTCGGAAGGGGTCTTGGTGGAaagctgggaggaaggggt
gatCATCTCGGACTTCATTGCCCGCTACAGCCGGTggcgggagctggagg
cccAAGGCTGTCAAATGTGCGGACAGGTCTTCGGCGCCTACACGCACCTC
CGTCTCTTTATCCAGGACACCTTGCTCTTGCCCATCAAGCCCCTGGTGGA
TGCCTGGAAAATGGACGCGGCGAGGAAGcgaatggaggcggagaaagcgg
cggaCGTCCAGGCAGAGGCTGCCGCTgaagaggccgtggccgggAGGCCA
GTGGAGGGACAAGGCGATGCCGCAGCGTCCTTGGCGGAATTGAAGAATGC
CAAGAACCGACGCCGCGCCCCCTTGAGCGTGGAGCTCGCCCACTTCATCG
TGAGCACGGGGGAAGACCTGTACTTGAAAATGCTTCTGGTCGACAACCTC
ATGCATGCCGATCTGCATCCGGGGAACATCCTCATACACGTGAACCGGAA
CGGCCGCCCTGTCCTGACCTTGGTGGACGCGGGGATGGTGGCGAAATTGT
CCGACGTGGAGCGGGCGAATTTTATCGGGCTCCTAGAGTCcatgggaagg
ggggacggggctCGGGCGGCCCGGCATGTGCTGGGTTTCTCTTTGACACA
AACCTGCGTGGGGGAAGACGCCACGGCTTTCGAGCAGGAGATGTGGGAGG
TGTTTGCCCTCCATTGCCGCGGCTACAACACGGACGTGAGCATCggcgtc
gtcctccgggAAGTCCTGGCCCTTGTTCGTAAATTCCACGTACGGGTGGA
TGTGAACTACGCGACACTCCTGATCAACCTGCTGTGcttggaggggatgg
cggcggctctcctcccgtcctaCAATATCCTGGACCGGGCAAAACCCTTG
TTGGTCCCTCACTCCAACAAGCTGCTCCGGCCTTTCTTCCGCCGGATcta
ccccctccttctagGCTTCAAACGACGCGGGGAAAGCGCTCTCTTTAACC
TGCTGAAGAAGACCGGTAACGTGCAACAACCGCACGCTCCATTGGCCATT
GGCAGTGGCAGCGACGACAGCAGCACGAAAgattcttcctctttccttcc
ggcGGATCGCCACGCTCCCCGCATTAAGAGCCCTGTAGGTTAAAGGAAGT
TAAACTCGACGTGGGTCTGTCCCTGATATAAAACCTGGAGCGGATGATTG
CATGACCCCTTCTTCTAAAAAACTTTCTAAAATCGTATCAGAAATGAAAT
CTTCGTTTTTAATCGAGGGGTTTTGGAGGTTTATGAAGATATCGCGCTGT
ACAGAGGGCCACTTTGCGTCAGAAATAAAGGGTGGGGGTGACTAGGAGAA
AGCGAGCGTGCGTCTTCCACTACTTAAAGAGGGATGACAGAAAAAGGACT
TTTTTTTTGGCCTTGTGTGTAGGTAAAGATGACAGGGACATGCACATGGG
ATGTGAGTCGCCCCCAGTCCTCTACATTCTCTATATACAGCGATACAATA
AAATGATGAAATGTTAAAATCTGTCTCGCTACCGGGGCTTATTAGGAAAT
AGATCAGGAAAGCATTTTGCGAGAGCCTACAGGTGAGTAAGATACGATAA
GAGCTGACGAACAAACAGAAACCAGTTGGAGTTGCCAAGTT

Coding sequence (CDS) from alignment at CM002457.1:1094051..1097191+

>rna1626 ID=rna1626|Name=rna1626|organism=Nannochloropsis gaditana|type=CDS|length=2214bp|location=Sequence derived from alignment at CM002457.1:1094051..1097191+ (Nannochloropsis gaditana)
ATGAGCAAATCAATCGGCAAGGGATGCGCCCGTAGACGCCTTTTCTATCT
CTTTACTCTAGGCGCGTTGTGTCGGCGTGGCGATGGCAGCCTCGAGACAA
CCCATTCCTTccacgcctcctcgtccaagccATCGTCTCCGTCAGCTTGG
AAGGAGCACGAAGCGGAGCAGCACCCGCTTCGACGGCAACAGAAGGAACC
ACAAATAAGACCAGCGTCAGCGGTTGGGAAATGCAATTCGCCCTCATCCA
TGAAATCGACAACGTCGTCCCTACCCTCCCGCGGTGGtgcgggaggggca
gcgagCCCGACCGGCGCGCCGGTGCACGTCCAAGACACGGAGATGAAAAA
GCTTTTGAAGCGCGGTCAGTTGCAAGCTACTGGTTTCGACAAAGAAAAGG
ATCATGAGGCGTCCATGGATGGAAGCGGAGACAGCCCTTCCCGCTTCGCC
CTCGTGCGACGGGGTCTCTAtctcctctacctcttcaGTGCCGCCATCCT
gactgccctcctcgccctcgtttCCGAACGCTTCCGCAGCCCATATTGGT
ACAGAATGATTACTTGTGCCATATCCCAGGCAGGGGCTGCTTTTATCAAG
TGGGGCCAGTGGGCCTCGGCCCGGCCTGACATCTTTCCCGAGGAATTTTG
CAGCACACTCGCCATGCTGCACTCTTTCGCCCCGACCCATTCCTTTGCCT
TCACGAAGCAAGCGATCGAGGAAGCCTTCGCGCGCCCTTTGGAGGAGGTC
TTCGAAGCTTTCGACCCGGATCCCATAGCCTCGGGAAGCATCGCCCAAGT
GCACGCGGCGGTGATGAAAGGACGCCGGGTGGCTGTGAAAGTGCGCCATC
CGGGGGTAGCGGCACAGATCGACATCGACTTCCGGGTTATGAAGAAGGTG
GCAAGCCTTGCAGATATGATTCCTGCCTTGAAATTCTTGAATCTGGGGCA
CAGCATGGAGCAATTTTCCCACACGCTGGCCAGTCAGACCAAGCTCGACG
TGGAGGGGCGGCATCTCCTGCTTCTGAACCACAATTTCCGGAAGTGGCGC
TCTTCCTTACGTTTTCCGGAGCCTTTGGTGCTGTCGGAAGGGGTCTTGGT
GGAaagctgggaggaaggggtgatCATCTCGGACTTCATTGCCCGCTACA
GCCGGTggcgggagctggaggcccAAGGCTGTCAAATGTGCGGACAGGTC
TTCGGCGCCTACACGCACCTCCGTCTCTTTATCCAGGACACCTTGCTCTT
GCCCATCAAGCCCCTGGTGGATGCCTGGAAAATGGACGCGGCGAGGAAGc
gaatggaggcggagaaagcggcggaCGTCCAGGCAGAGGCTGCCGCTgaa
gaggccgtggccgggAGGCCAGTGGAGGGACAAGGCGATGCCGCAGCGTC
CTTGGCGGAATTGAAGAATGCCAAGAACCGACGCCGCGCCCCCTTGAGCG
TGGAGCTCGCCCACTTCATCGTGAGCACGGGGGAAGACCTGTACTTGAAA
ATGCTTCTGGTCGACAACCTCATGCATGCCGATCTGCATCCGGGGAACAT
CCTCATACACGTGAACCGGAACGGCCGCCCTGTCCTGACCTTGGTGGACG
CGGGGATGGTGGCGAAATTGTCCGACGTGGAGCGGGCGAATTTTATCGGG
CTCCTAGAGTCcatgggaaggggggacggggctCGGGCGGCCCGGCATGT
GCTGGGTTTCTCTTTGACACAAACCTGCGTGGGGGAAGACGCCACGGCTT
TCGAGCAGGAGATGTGGGAGGTGTTTGCCCTCCATTGCCGCGGCTACAAC
ACGGACGTGAGCATCggcgtcgtcctccgggAAGTCCTGGCCCTTGTTCG
TAAATTCCACGTACGGGTGGATGTGAACTACGCGACACTCCTGATCAACC
TGCTGTGcttggaggggatggcggcggctctcctcccgtcctaCAATATC
CTGGACCGGGCAAAACCCTTGTTGGTCCCTCACTCCAACAAGCTGCTCCG
GCCTTTCTTCCGCCGGATctaccccctccttctagGCTTCAAACGACGCG
GGGAAAGCGCTCTCTTTAACCTGCTGAAGAAGACCGGTAACGTGCAACAA
CCGCACGCTCCATTGGCCATTGGCAGTGGCAGCGACGACAGCAGCACGAA
AgattcttcctctttccttccggcGGATCGCCACGCTCCCCGCATTAAGA
GCCCTGTAGGTTAA

Synonyms

Publications