rna1623, rna1623 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1623
Unique Name	rna1623
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	201
Alignment location	CM002457.1:1087036..1089275 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100024g11.4349.mrna
Orig protein id	gnl\|cribi\|Naga_100024g11.4349
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:1087036..1089275 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100024g11	gene1560	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1623	rna1623-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29091.1	cds1619	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:1087036..1089275-
coding sequence from alignment at CM002457.1:1087036..1089275-

mRNA sequence

>rna1623 ID=rna1623|Name=rna1623|organism=Nannochloropsis gaditana|type=mRNA|length=201bp
ATGGAGCCAAGCTGTGTACATATCTACAGAAAATACTTCTTGACAGAGCA
TGAGGTTAACTGGATGGAGAGAGCAGAAAACCATGAATGGTCCGCTCGAG
GGCCGATCAAAGCAAAATTTGACAATGCTTTCAGACCAAGTATTCTTTCC
TTTTTACGTACCTCCACCTTCACCCTTTCTCTTGCTCTTTTTACTTTCTG
A

protein sequence of rna1623

>rna1623-protein ID=rna1623-protein|Name=rna1623|organism=Nannochloropsis gaditana|type=polypeptide|length=667bp
MAVHWFAKLLLRRRLSSSFFLSACVMLLALQSSTAVPVSLPSWATALQEC
VYERQRQLQGQIFGVDDFVALRDKLISEILLWGKSTPEVMQTRLAYPYFA
FLPNLKGIISTTSAPSMEPAITPTMSPGMDGVSGRSVHGEEASTSTGMNW
THPVSLRVQGGCFESTAFRYYAGTRQVEIDAGRPSSPGCSDFYMLATTSS
FHLEHVTRRGRYLVEWPLPADQSDAERWDEAAKGIRVFLFATTVEETWQS
VFQTAALFEPVLTQDVSERAAARNAKFLKDYAGFVFEKLESNGPAEEEEV
SVQVERRRMLEDDEGTHKVPLRLRTREAEALTSPLLAIPLREFGQGRAAV
IEESEVGNGDLFGVLRMDGLDPMLAWGMGATTGHMTTALWMATGEGDAEE
EALYIVESQVKSSYWPQNNVQRTPFRQWMQWADAAGYNVLYVPLSDEARA
AFDVEKARAWFREMEGLAYGYHSLLWGWVDTERENYPCLPPGFDRCLEWA
FLEVAFALIDRHVPAIATLLWSEAFNKRVGTEGLTTSEVWMRANLSLSLP
SSAVPGIVEEDVWLYHTSRERREGGREEVLGRAMVCCVFVCGIWKAAGLF
GEASEEINCGELTNADDVMLALFRGDMRQILGKWKMFLPSFNFKKPFPHM
DEKCPSLGPAYQQPLDC

mRNA from alignment at CM002457.1:1087036..1089275-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1623 ID=rna1623|Name=rna1623|organism=Nannochloropsis gaditana|type=mRNA|length=2240bp|location=Sequence derived from alignment at CM002457.1:1087036..1089275- (Nannochloropsis gaditana)
ATGGCTGTCCACTGGTTTGCGAAGCTCCTGCTGCGGAGGCGGCTGTCTTC
ATCCTTCTTTTTGTCGGCGTGCGTGATGCTTCTGGCGCTGCAGTCTTCAA
CTGCAGTACCAGTCTCGCTTCCATCTTGGGCTACCGCGCTTCAAGAGTGT
GTTTATGAACGCCAACGTCAGCTACAAGGCCAAATATTTGGGGTAGATGA
CTTTGTCGCACTGCGTGATAAGGTAAGATGGTGCAGTCGACGGAATGGAA
CGATATATTTCAAACTCTCCTTGTGAGAAGGTAATGTATTTATTAAGAAA
CACGGGATTGTATGCAGGAGCTTTGCGGTGCTGATCAACAAACACAGCAA
ACGTCAACTTGATGCACATTTTCTCCGATTTCCCCCCCCGCATAGATTGT
TCAACATTGTCTTAATATATGTTCCTTTTCTTGCTGGTCCCTTTTCCAAA
ACATTCAGCTCATCTCAGAAATCCTGCTTTGGGGAAAATCCACGCCCGAA
GTGATGCAGACTCGATTAGCCTACCCATATTTTGCCTTCCTGCCCAATCT
CAAGGGCATAATTAGTACGACATCTGCCCCATCCATGGAGCCCGCCATTA
CCCCTACCATGTCGCCGGGCATGGACGGAGTATCCGGGCGCAGCGTGCAC
GGAGAAGAAGCTAGTACAAGCACAGGCATGAACTGGACACATCCTGTATC
TCTGCGAGTCCAGGGGGGCTGCTTTGAATCTACGGCCTTCAGGTACTATG
CCGGGACCCGACAAGTGGAAATTGATGCGGGTCGCCCCTCCTCCCCCGGG
TGCAGTGATTTCTACATGCTGGCTACGACTAGTTCCTTCCACCTCGAGCA
CGTGACAAGACGGGGCCGGTACTTGGTCGAATGGCCCTTGCCCGCCGATC
AATCTGACGCAGAGCGTTGGGACGAGGCGGCGAAAGGCATCCGAGTCTTC
CTGTTCGCCACGACGGTGGAGGAAACCTGGCAGAGCGTTTTCCAGACGGC
GGCTTTATTCGAGCCCGTTTTGACCCAAGACGTAAGTGAGAGGGCAGCGG
CACGCAATGCCAAGTTTTTGAAGGACTACGCGGGTTTCGTCTTTGAAAAA
TTAGAGTCAAATGGGCCCGCGGAGGAGGAGGAGGTATCTGTGCAGGTGGA
GAGGCGGAGAATGCTGGAGGATGACGAAGGCACACACAAAGTGCCTTTGC
GGCTCCGGACAAGAGAAGCTGAGGCGCTCACTTCTCCCCTTTTGGCCATC
CCCTTGCGCGAGTTCGGTCAGGGCAGGGCGGCTGTCATCGAGGAGTCGGA
GGTCGGAAACGGCGATTTGTTTGGTGTCCTGCGCATGGACGGTCTGGACC
CTATGCTGGCTTGGGGTATGGGAGCAACCACCGGGCACATGACCACGGCC
CTGTGGATGGCGACAGGGGAGGGGGACGCGGAAGAAGAAGCCTTGTACAT
AGTGGAGAGCCAGGTCAAGAGCAGTTATTGGCCGCAAAACAATGTCCAGC
GGACACCGTTTCGGCAGTGGATGCAGTGGGCGGACGCCGCGGGATACAAC
GTGCTGTACGTGCCTTTGAGCGACGAGGCTCGGGCCGCCTTCGACGTGGA
GAAAGCCCGGGCCTGGTTCCGAGAGATGGAGGGACTGGCCTATGGCTACC
ACTCCCTTCTCTGGGGATGGGTGGACACGGAGCGAGAGAACTACCCTTGC
CTTCCCCCCGGCTTTGACCGGTGTCTGGAGTGGGCCTTTTTGGAGGTGGC
CTTCGCCCTGATCGACAGGCACGTGCCGGCCATCGCCACCTTGCTCTGGA
GCGAGGCATTCAATAAGCGCGTGGGAACGGAGGGACTTACCACCTCCGAG
GTCTGGATGCGGGCGAACCTGTCCCTGTCCCTGCCCTCCTCGGCGGTGCC
GGGCATAGTGGAGGAGGACGTGTGGTTGTACCACACGTCACGGGAGAGGA
GGGAGGGAGGGAGGGAGGAAGTCTTGGGGCGGGCCATGGTGTGCTGTGTC
TTTGTGTGTGGGATCTGGAAGGCGGCCGGGTTGTTTGGGGAGGCGTCGGA
GGAGATTAACTGCGGAGAACTGACCAATGCCGACGACGTGATGCTGGCGC
TCTTCCGCGGGGACATGCGGCAGATATTGGGGAAGTGGAAAATGTTTCTG
CCGTCGTTTAATTTCAAAAAGCCGTTTCCTCACATGGACGAGAAATGCCC
GAGTTTGGGCCCGGCGTATCAACAGCCTCTGGACTGCTAG

Coding sequence (CDS) from alignment at CM002457.1:1087036..1089275-

>rna1623 ID=rna1623|Name=rna1623|organism=Nannochloropsis gaditana|type=CDS|length=4008bp|location=Sequence derived from alignment at CM002457.1:1087036..1089275- (Nannochloropsis gaditana)
CTCATCTCAGAAATCCTGCTTTGGGGAAAATCCACGCCCGAAGTGATGCA
GACTCGATTAGCCTACCCATATTTTGCCTTCCTGCCCAATCTCAAGGGCA
TAATTAGTACGACATCTGCCCCATCCATGGAGCCCGCCATTACCCCTACC
ATGTCGCCGGGCATGGACGGAGTATCCGGGCGCAGCGTGCACGGAGAAGA
AGCTAGTACAAGCACAGGCATGAACTGGACACATCCTGTATCTCTGCGAG
TCCAGGGGGGCTGCTTTGAATCTACGGCCTTCAGGTACTATGCCGGGACC
CGACAAGTGGAAATTGATGCGGGTCGCCCCTCCTCCCCCGGGTGCAGTGA
TTTCTACATGCTGGCTACGACTAGTTCCTTCCACCTCGAGCACGTGACAA
GACGGGGCCGGTACTTGGTCGAATGGCCCTTGCCCGCCGATCAATCTGAC
GCAGAGCGTTGGGACGAGGCGGCGAAAGGCATCCGAGTCTTCCTGTTCGC
CACGACGGTGGAGGAAACCTGGCAGAGCGTTTTCCAGACGGCGGCTTTAT
TCGAGCCCGTTTTGACCCAAGACGTAAGTGAGAGGGCAGCGGCACGCAAT
GCCAAGTTTTTGAAGGACTACGCGGGTTTCGTCTTTGAAAAATTAGAGTC
AAATGGGCCCGCGGAGGAGGAGGAGGTATCTGTGCAGGTGGAGAGGCGGA
GAATGCTGGAGGATGACGAAGGCACACACAAAGTGCCTTTGCGGCTCCGG
ACAAGAGAAGCTGAGGCGCTCACTTCTCCCCTTTTGGCCATCCCCTTGCG
CGAGTTCGGTCAGGGCAGGGCGGCTGTCATCGAGGAGTCGGAGGTCGGAA
ACGGCGATTTGTTTGGTGTCCTGCGCATGGACGGTCTGGACCCTATGCTG
GCTTGGGGTATGGGAGCAACCACCGGGCACATGACCACGGCCCTGTGGAT
GGCGACAGGGGAGGGGGACGCGGAAGAAGAAGCCTTGTACATAGTGGAGA
GCCAGGTCAAGAGCAGTTATTGGCCGCAAAACAATGTCCAGCGGACACCG
TTTCGGCAGTGGATGCAGTGGGCGGACGCCGCGGGATACAACGTGCTGTA
CGTGCCTTTGAGCGACGAGGCTCGGGCCGCCTTCGACGTGGAGAAAGCCC
GGGCCTGGTTCCGAGAGATGGAGGGACTGGCCTATGGCTACCACTCCCTT
CTCTGGGGATGGGTGGACACGGAGCGAGAGAACTACCCTTGCCTTCCCCC
CGGCTTTGACCGGTGTCTGGAGTGGGCCTTTTTGGAGGTGGCCTTCGCCC
TGATCGACAGGCACGTGCCGGCCATCGCCACCTTGCTCTGGAGCGAGGCA
TTCAATAAGCGCGTGGGAACGGAGGGACTTACCACCTCCGAGGTCTGGAT
GCGGGCGAACCTGTCCCTGTCCCTGCCCTCCTCGGCGGTGCCGGGCATAG
TGGAGGAGGACGTGTGGTTGTACCACACGTCACGGGAGAGGAGGGAGGGA
GGGAGGGAGGAAGTCTTGGGGCGGGCCATGGTGTGCTGTGTCTTTGTGTG
TGGGATCTGGAAGGCGGCCGGGTTGTTTGGGGAGGCGTCGGAGGAGATTA
ACTGCGGAGAACTGACCAATGCCGACGACGTGATGCTGGCGCTCTTCCGC
GGGGACATGCGGCAGATATTGGGGAAGTGGAAAATGTTTCTGCCGTCGTT
TAATTTCAAAAAGCCGTTTCCTCACATGGACGAGAAATGCCCGAGTTTGG
GCCCGGCGTATCAACAGCCTCTGGACTGCTAGATGGCTGTCCACTGGTTT
GCGAAGCTCCTGCTGCGGAGGCGGCTGTCTTCATCCTTCTTTTTGTCGGC
GTGCGTGATGCTTCTGGCGCTGCAGTCTTCAACTGCAGTACCAGTCTCGC
TTCCATCTTGGGCTACCGCGCTTCAAGAGTGTGTTTATGAACGCCAACGT
CAGCTACAAGGCCAAATATTTGGGGTAGATGACTTTGTCGCACTGCGTGA
TAAGCTCATCTCAGAAATCCTGCTTTGGGGAAAATCCACGCCCGAAGTGA
TGCAGACTCGATTAGCCTACCCATATTTTGCCTTCCTGCCCAATCTCAAG
GGCATAATTAGTACGACATCTGCCCCATCCATGGAGCCCGCCATTACCCC
TACCATGTCGCCGGGCATGGACGGAGTATCCGGGCGCAGCGTGCACGGAG
AAGAAGCTAGTACAAGCACAGGCATGAACTGGACACATCCTGTATCTCTG
CGAGTCCAGGGGGGCTGCTTTGAATCTACGGCCTTCAGGTACTATGCCGG
GACCCGACAAGTGGAAATTGATGCGGGTCGCCCCTCCTCCCCCGGGTGCA
GTGATTTCTACATGCTGGCTACGACTAGTTCCTTCCACCTCGAGCACGTG
ACAAGACGGGGCCGGTACTTGGTCGAATGGCCCTTGCCCGCCGATCAATC
TGACGCAGAGCGTTGGGACGAGGCGGCGAAAGGCATCCGAGTCTTCCTGT
TCGCCACGACGGTGGAGGAAACCTGGCAGAGCGTTTTCCAGACGGCGGCT
TTATTCGAGCCCGTTTTGACCCAAGACGTAAGTGAGAGGGCAGCGGCACG
CAATGCCAAGTTTTTGAAGGACTACGCGGGTTTCGTCTTTGAAAAATTAG
AGTCAAATGGGCCCGCGGAGGAGGAGGAGGTATCTGTGCAGGTGGAGAGG
CGGAGAATGCTGGAGGATGACGAAGGCACACACAAAGTGCCTTTGCGGCT
CCGGACAAGAGAAGCTGAGGCGCTCACTTCTCCCCTTTTGGCCATCCCCT
TGCGCGAGTTCGGTCAGGGCAGGGCGGCTGTCATCGAGGAGTCGGAGGTC
GGAAACGGCGATTTGTTTGGTGTCCTGCGCATGGACGGTCTGGACCCTAT
GCTGGCTTGGGGTATGGGAGCAACCACCGGGCACATGACCACGGCCCTGT
GGATGGCGACAGGGGAGGGGGACGCGGAAGAAGAAGCCTTGTACATAGTG
GAGAGCCAGGTCAAGAGCAGTTATTGGCCGCAAAACAATGTCCAGCGGAC
ACCGTTTCGGCAGTGGATGCAGTGGGCGGACGCCGCGGGATACAACGTGC
TGTACGTGCCTTTGAGCGACGAGGCTCGGGCCGCCTTCGACGTGGAGAAA
GCCCGGGCCTGGTTCCGAGAGATGGAGGGACTGGCCTATGGCTACCACTC
CCTTCTCTGGGGATGGGTGGACACGGAGCGAGAGAACTACCCTTGCCTTC
CCCCCGGCTTTGACCGGTGTCTGGAGTGGGCCTTTTTGGAGGTGGCCTTC
GCCCTGATCGACAGGCACGTGCCGGCCATCGCCACCTTGCTCTGGAGCGA
GGCATTCAATAAGCGCGTGGGAACGGAGGGACTTACCACCTCCGAGGTCT
GGATGCGGGCGAACCTGTCCCTGTCCCTGCCCTCCTCGGCGGTGCCGGGC
ATAGTGGAGGAGGACGTGTGGTTGTACCACACGTCACGGGAGAGGAGGGA
GGGAGGGAGGGAGGAAGTCTTGGGGCGGGCCATGGTGTGCTGTGTCTTTG
TGTGTGGGATCTGGAAGGCGGCCGGGTTGTTTGGGGAGGCGTCGGAGGAG
ATTAACTGCGGAGAACTGACCAATGCCGACGACGTGATGCTGGCGCTCTT
CCGCGGGGACATGCGGCAGATATTGGGGAAGTGGAAAATGTTTCTGCCGT
CGTTTAATTTCAAAAAGCCGTTTCCTCACATGGACGAGAAATGCCCGAGT
TTGGGCCCGGCGTATCAACAGCCTCTGGACTGCTAGATGGCTGTCCACTG
GTTTGCGAAGCTCCTGCTGCGGAGGCGGCTGTCTTCATCCTTCTTTTTGT
CGGCGTGCGTGATGCTTCTGGCGCTGCAGTCTTCAACTGCAGTACCAGTC
TCGCTTCCATCTTGGGCTACCGCGCTTCAAGAGTGTGTTTATGAACGCCA
ACGTCAGCTACAAGGCCAAATATTTGGGGTAGATGACTTTGTCGCACTGC
GTGATAAG

Synonyms

Publications