rna1622, rna1622 (mRNA) Nannochloropsis gaditana

Overview
Namerna1622
Unique Namerna1622
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2226
Alignment locationCM002457.1:1086757..1087011 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100024g12.4347.mrna
Orig protein idgnl|cribi|Naga_100024g12.4347
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1086757..1087011 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100024g12gene1559Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1622rna1622-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29089.1cds1618Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1622 ID=rna1622|Name=rna1622|organism=Nannochloropsis gaditana|type=mRNA|length=2226bp
CGCATGCATAGTTAGCAGTTGGACAACCACTGTGAAGGTGTCGTGGTTGC
TGTCTTTGATGCTCGGAAAGCCTAGAATCGATAGGAAGGCAGGCAAGCTG
CCAGAAGGCGGGAATAGGATCTGTGTGCCTGGCCGTGCTCTGCAAGGATT
TTTGTGCGTCATTTCTACTCGCATTGCAAGCGCACTCGCGCATTTTAATG
TCATCAATGCAATGTTATGCAATGGAATTCCTTTATAGTTGACTTTCGCG
GTAGAAGGACCATTCTTTTGGAACTTCGGACGTTCAACCTCATCATCGTT
CTCCTTAACTCTTCACTCATGCCCCGAACTCACTCCTTTATGTCGCACAT
GCACGTTTTTCCACCTAGCACGACCGTGCGTCAAAAATTGGCATGAGTTG
GAACGACTCCCGTCAGAGTCTTGGACCACGTGCGTCCATGGGGCCACGCC
CTAGCATGGGTCCTCGTGCCAGTCTCGGCGGCCGGCAACAGTCAGTGCAG
GCCTTCTCCTTTCCTATCCTCAAGACACCCGACATTCTGCAATGCATGCA
TGAGCTGCAGGTGCGGTTGACGGAGGCGGAGATCAATGAGGCAGATAAGC
ATCGTGACGCCATTCGACGGGCTTATGAGTATTTGGTGGAGATTTGCACA
GGCATCACCAAAGAAGAAATGAGCCAGCCGGCCTTCAGTGGCATCAACGC
GCTTAACTATCCGGAGCTGCACGAGGAGTCTATTCCCGAGCTCGCATTCT
TCCGGGCGTGCACAAAGATGATGACTGTTTGCGGTGTACATGACTTCAGT
ATGAAAGACTTGCTGTCTCCCGAACCTAAGAGGGTCAGACGGCATTTGAG
TGCCATCATCAACTTCGCCAAATTCCGGGAAGAACGTTTGGTCATGTATT
CGGAGCTTGCAGTCAAAAGGGATGAGCTTTTGGACAACCTGAAGCGGTTG
CAGGACGAGGAAGTGGGTGTTGCGAAAGAGCTGGGCGTCTTGCGGGAGCA
AGCCGCGGCCGAGAGCGAGGAAATGGAAGGATTGGAACAAGCGTGCGAAG
TGGCGGAGGCGGAACTGGAGCAATTGAACAAGCGCCAGGCCGAGATTCGT
GCTCAGGGGGCCGAGTTGAAAAAACAGAGTCAGGATCTGAAAGAGAGCAT
TGGGAAGGCCAGCTCGGCCCTGGAATCAGGGATCGAGGAACGCGAGAAAA
CGCGGGGGCAGATCGTGCGGAGTCCCGAACGGGTCCGGCGCGAATTGGCC
AGCGCCGCAGAGGAAGTGGAGACGGAGAAAAAGGAGGGGCTGGCGACGGA
GCGGGACGCCCGCGAAATGCATCTGCGGGTACAGGCGGTACAGAAGGGGG
AGAAGGAGGTTGGGAAGGCCATCAAGGCCCTGGAGGAGATCGAAGGGGAG
ATGGCGAAGGTGAAACTGGCGAGCAAGGAGCTGAAAGACGCGACCAAGAA
TGTGCAGGGTAACCGGCAAAGGGTGTTAGAAGCTGCGCAGGAAATGGAGA
ACTTGAAGCGACAGGCGTCTAGGTTCGAGGACCGGTGGACCCATCTGCGG
AAATCGGGCAAGGCCAAAGACGAGGCCCTGGAAGTGGCAGGCAAGGAAGC
GCAGGCACAGCTTTTGGCTGTGGAGAAGGTCCGGCGCGCCCATCAACAGG
CGGCAGATGAGTCGGAGGCAGATGTAGCGCGCGTGACTGCGGAGGTGGAG
GGAGAAAAGCAGGAGAACGCGGCGCGGTGCGCAGAGATGGTCGAAGCCTT
GAAAAGCTTGAGTGAAACGGTTGCGGAGCATCAGCAAGGCCTCCGGGAAG
CGTTGGGGGACACGACCAATGCACCGTTGCCCTCCGCGGCCAGTAGCACG
CCCATTTTGAGCAGGCTGTCCATGGTGGCGGCGGCGGCCAGGAAGGAGGG
GTCGAAACCTGTGCTTTGATGCAGGAATAGGAGCGAGAGGGCAAGGAACA
AGGACGTCAACGGAACGGGCGAGGCACATGAGGGATAGCCCAATACATAT
GCGCGGACAGGAGAACCTGTGTCTCCGACGTACCAGACGAAAACTATTGG
AAGAAGTACACCGGCAAGCGAGCGTCAGTTCGTGTGGATAAGCGTGGAAA
CAGAAATCAGAAAGTAAAAAGAGCAAGAGAAAGGGTGAAGGTGGAGGTAC
GTAAAAAGGAAAGAATACTTGCTGTAATTTTATGTTAAAGAGAAGCGGGG
AAGAACAAGATCAAGCGAGACTCACG
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protein sequence of rna1622

>rna1622-protein ID=rna1622-protein|Name=rna1622|organism=Nannochloropsis gaditana|type=polypeptide|length=66bp
MEPSCVHIYRKYFLTEHEVNWMERAENHEWSARGPIKAKFDNAFRPSILS
FLRTSTFTLSLALFTF
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mRNA from alignment at CM002457.1:1086757..1087011-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1622 ID=rna1622|Name=rna1622|organism=Nannochloropsis gaditana|type=mRNA|length=255bp|location=Sequence derived from alignment at CM002457.1:1086757..1087011- (Nannochloropsis gaditana)
ATGGAGCCAAGCTGTGTACATATCTACAGAAAATACTTCTTGACAGAGCA
TGAGGTTAACTGGATGGAGAGAGCAGAAAACCATGAATGGTCCGCTCGAG
GGCCGATCAAAGCAAAATTTGACAATGCTTTCAGACGTGAGTCTCGCTTG
ATCTTGTTCTTCCCCGCTTCTCTTTAACATAAAATTACAGCAAGTATTCT
TTCCTTTTTACGTACCTCCACCTTCACCCTTTCTCTTGCTCTTTTTACTT
TCTGA
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Coding sequence (CDS) from alignment at CM002457.1:1086757..1087011-

>rna1622 ID=rna1622|Name=rna1622|organism=Nannochloropsis gaditana|type=CDS|length=402bp|location=Sequence derived from alignment at CM002457.1:1086757..1087011- (Nannochloropsis gaditana)
CAAGTATTCTTTCCTTTTTACGTACCTCCACCTTCACCCTTTCTCTTGCT
CTTTTTACTTTCTGAATGGAGCCAAGCTGTGTACATATCTACAGAAAATA
CTTCTTGACAGAGCATGAGGTTAACTGGATGGAGAGAGCAGAAAACCATG
AATGGTCCGCTCGAGGGCCGATCAAAGCAAAATTTGACAATGCTTTCAGA
CCAAGTATTCTTTCCTTTTTACGTACCTCCACCTTCACCCTTTCTCTTGC
TCTTTTTACTTTCTGAATGGAGCCAAGCTGTGTACATATCTACAGAAAAT
ACTTCTTGACAGAGCATGAGGTTAACTGGATGGAGAGAGCAGAAAACCAT
GAATGGTCCGCTCGAGGGCCGATCAAAGCAAAATTTGACAATGCTTTCAG
AC
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Synonyms
Publications