rna162, rna162 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna162
Unique Name	rna162
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3123
Alignment location	CM002455.1:423459..425480 -

Link to JBrowse

Properties


Property Name	Value
Product	tubulin tyrosine ligase
Orig transcript id	gnl\|cribi\|Naga_100013g58.9787.mrna
Orig protein id	gnl\|cribi\|Naga_100013g58.9787
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:423459..425480 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100013g58	gene154	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30499.1	cds162	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna162	rna162-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:423459..425480-
coding sequence from alignment at CM002455.1:423459..425480-

mRNA sequence

>rna162 ID=rna162|Name=rna162|organism=Nannochloropsis gaditana|type=mRNA|length=3123bp
GACTGCCCAATCATTACATCCCCCTTCCACTGACCATAGGCCCTGCAGCG
GTACCCCTCGCTCGTTCAATCTAAAGTTTTTTCTTTGTGACCAGGCATCT
CTCATGAACGTCGAGGCCAGCCCCACAAAAAAATATAAAGTTGCAACTGC
ATAAATCGGTGATTCGTACTTTATTTGCATCTATGCCTTCAGTTCGTGCG
GCGACAGCTCCCATCGAGCTACGAAAAAGCCGCAACAGTAGCATCCGTGC
TTTTTTGTGCACTCTGAAGGACAGCGTCAGTAAAGGTCAAGGCAGTTTTG
GCGTCCTAGCCGTGGCTCTACTCAGTCCATTCGCGTTCTCTGTATTACCG
TGGTCTCTTGGTGTATTGATCGTCTTCTTGGTAGGGATCGTTATCGAAGC
AGGCCCAGGCGTGGCACTGGACTATCTAACGCATCTGGAGGAGACAGAGA
GCCGGGGCGGATCATTTGACGTGTGCAGCGCTCTTGGCGGTGCACCTGGT
TCGCAGAGACCTCCATCTCATCACGATCAGGCCTTAGACTCGGCGGTCAT
CCTCCAACGAGGCGTCACTAGCCCGACGACAAGGAGAGGCCGAGAACATG
AATTCCAAAGCTCCTTACTTGAGGCGCGGGTAGAAGTCAGAGAGTTTCGC
GTCGTTGAAAGGAAATTTGCAAGCTACAAAATATCGGTCAGCTGCCGTGT
TCCGGTTGGCATCGGGAGCAGCAGTGATGCGGCGGGCACTGAGAGCGCTT
GTGCTTGGTCGGTGTGGAAGCGCTACTCGGATTTCGAGGACCTTCGGGAA
CGCCTGGACAACCCTTGCGATAAACACGGGTACGAGGGACAGCCGCTGCC
TCCTATACCGCCCAAGACCTTGTTCAAAAACCTCTCGCCACGATTTCTGG
CCAGAAGAGCTCAGAGCCTTGAGGAATTCCTCGTCCGGATCATCACGCGG
GCGGATATTTGCGACGAGCCTGTGCTTCGGATGTTTTTGGGGCTGGCACC
GCTACCGGGGCGATCTCAGTCGCTCTCACTGTCGCAAGAATGTGTTGAGA
AGAAGCGGGAAAGGGGGTCTGTCGTGGGAGAGGAGGAAGGAAGGGAAGGG
CAGGAGGAGGAGGGAAGGGGTCAAGTCGACCGAGACGCAGACGAGCGACG
AAGCGAGGATGACGGGGATACGGACAGTCACGAGGACGAGGGAACAGATG
GGTATGAGTCCAGAGAAGACCCTGCGCTTTCTGCGCCTCATTGTTCTTCG
TCTCTGGTTTCGGTGGCGGCGGCAGGCTTGTCCCTGCCCACCTTTTGCCG
CCCCAAAAACGAAGCGGACGAGAAACACCACGTTGAGCAAGATACTCCTC
GGGCGCGAGGTTCATCGGTAGATGATCCAAAGCGTCGCGGTAACAGAGGT
AGTTCGCTGTCCATGGATGGCAACGAGGTCTCGACGGAGGAGGAGGACGG
CGCAGAGGCCGCACTGCCAGACGTGCGTGCGGAAACAGGGGATGGAAGCA
AGCTGTCCGCGCGAAGCGCGCCCGAAGAAAGGTGTGAGAACGATGAGAGC
CAAGGCTCAGGCTACCGGCAGACCTTTTCCTCGGCGAGCACGGACGACGG
GATGGACGACGAGGAACGGGAGGCTCGGAGCGCCAAGCACGTGCTGGAAA
CGGTGCGTGCGCTCTCCGGCCATTCGCCCTCCCAGTGGGACCGCCTTGGG
CCTTCCTCCGGCCTCCCATTTCTGGGGCCCACTGACAGAAATCGGCCTTC
GGACGACCCATCGGCTGCTCCAGCCGCTGCCTCCCCGCCTCCCTCCCCTC
ACCAGTCGGTCCGGGCGCCAGGCGCGTCCGTCCAAGACTTCGCCTCCTGG
GGATTGCGTTTGCAGCACCCCAACGCCTACTACGACCCGGGGCGTGGGAA
CAGCTTCCGGGTCCGCGGAAGGCGCTACCTGCACGATCGGCTCAAAACCC
CGGCCGGCCCTCCCGTTGGTGAGCTGGTCATTGCCTACGTCTTCCGAATT
TCTCCAGAAAATCCTGGGCAGCGCGAAGACCACATTGCCAGTCGCGGCCG
GATGGCGGAGATACTGCGCGAGATGCAAGACATGAAAGGGCGGGATGGCA
AGCACACGTTTTTTTTCTTGTTGAATTTCCAAGTACCCGGAGATCCGCCT
TTGAGTATGGTGACCGTTTTCGCCTTGCCTAGAGACAGGCGACCAGCGGA
AGACGGATGTTTTTGGACACTCTTCGATCGTTTCGTGGATTTTCCCATGG
ACGATATTAAAGGAGAAGGCAAGTCTGACAGAGGGGGGCGGTATGCTTTG
TCTGACTTCAAGAATAAACGTTTCAAGCTAATCCCCAGTATCGTGGACGG
GCCCTCCATGATTAAATGGGCGGTCGGGAATAAGCCGACGATTCTGGGAC
AGAAACTCACGCAACGCTACTTTCGTGGGGAGGACTACGTGGAGGTGGAT
GTCGACATTGCTTCCTCCGCTCTGGCAAGTCAGATCGTCTCGCTGTGCCG
GGGTTACGCCAAGTACCTGCAGGTGGAGATGGGTATTTTACTACAGGGAG
AGGACGAGACAGCAGAGTTGCCCGAGAAGCTGCTGGGAACCATTGGGATC
AGAAATCTCGACATCAATTCTTTTGGTGTCGAACGGTATTCAAATGTGCG
ACCAGAAGAAGCAGATGGCATGGATTGAGGCGCAGATAATATTTGGCGCT
TATTACAGAGTAGTGAGGGCATACATCGTAAAGGGGGGATCTGGGGGTCA
AAGTTCGTGCCAGTAGTGACGGATGCAGGAACTTGTGTACAGCAACACTC
TGTTAACTTTACGCAGTGTAAAAATCATTGGGTGCATAGCGTGCGAAGAT
GTGGAGACACTGCTCGATGTCGAAAGAAATGTGTTAGCTTTCACTCTGTC
ACCCCTCTAATAAGCGCATCCCGACCTCCCCATTCTCTGGGTGCAAGGAT
TGGTATACCAACGCCAAATCTTTGCTGATTTCTCCGTCTTCAAGGACGGC
CACGTCCAGTGTAGCCTCCACCAGCCCCTCTATCACCGACTTCAGACGCG
GCCCTGTTTGCTTGAAATCCGGTCCTGGATTCACCTCTAGTAGATGCACC
TGTGGTGTCAATACTGGGAGACC

protein sequence of rna162

>rna162-protein ID=rna162-protein|Name=rna162|organism=Nannochloropsis gaditana|type=polypeptide|length=456bp
MAWAWKTSAIENTRFEIKYTPYFSSIGPVSTACPTYDPRATRIWVKIECD
YTRRILVKAITKRQSRLCGVKNQKDASILWADYEDLDFDRVLASGGKIKA
NSYLVRKGLARKAQLAYHLRKYMAKRPRSILHGAIPETLVIETWEAFEEG
MSFGALGATFDGNLTATLSLRDRLDWCLRDARERIARSPGSTWILKPSVT
NKGAEITVLKDYQSMRDIVRTWPDVREWVLQAYIVTPLLYRRRKFHLRCY
VLAVGNLSVYVWRQILLLTSTVEYDSEDLCNQLAHVTNTARQVEDGEMCP
AVEDCVFSLDDLVDDLRTKQHLSLEQAGGIVSDIRGGIENVTGELFKALH
GERTVFAPVPQCFELLGLDFLVSMDHTSSNESGLPVLTPQVHLLEVNPGP
DFKQTGPRLKSVIEGLVEATLDVAVLEDGEISKDLALVYQSLHPENGEVG
MRLLEG

mRNA from alignment at CM002455.1:423459..425480-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna162 ID=rna162|Name=rna162|organism=Nannochloropsis gaditana|type=mRNA|length=2022bp|location=Sequence derived from alignment at CM002455.1:423459..425480- (Nannochloropsis gaditana)
CAGAGCGCTTTCCTCATGACACTCGTAAACACCATTCATTTTGTAGGGAT
TTACTGTCTTTCTGATGAGTTAAATCGCAGAACGTCACTGAAATTATCGG
CTCGTAACCCACTTTCGGTAAAGGTAGACGAAGCAAGTGGGCCTGGGTCA
CAGTAGAAGGCTGGGAAGTCGCTTGAATCCGCACCACCAGCAAGAATCTC
AACCAATTGAAGCAGGCTTAGCTTTCTAATATCCGTCATCCGCTGGTGTC
ATCGCTCTCAGGCTCAAAGCACTCACATCGTTACAGTACCATCGATACTA
TTGGAAGCACTAGAAGTATGGCATGGGCGTGGAAAACATCAGCCATAGAA
AACACTCGCTTTGAAATCAAATATACCCCATACTTTTCTTCAATTGGCCC
TGTCTCTACTGCCTGTCCCACCTATGATCCCCGGGCTACCCGTATCTGGG
TGAAGATCGAGTGCGACTACACAAGACGTATCCTCGTCAAAGCCATTACC
AAGCGGCAGTCCCGTTTATGTGGTGTTAAAAATCAAAAGGATGCCTCCAT
ATTATGGGCAGACTACGAGGATCTGGATTTCGACCGAGTCCTGGCAAGTG
GAGGTAAAATTAAAGCCAACTCGTACTTGGTCCGGAAAGGGCTAGCGCGG
AAAGCTCAATTAGCCTATCATCTACGCAAATACATGGCGAAAAGACCAAG
GTCAATACTGCATGGAGCAATCCCTGAGACCTTAGTCATCGAAACTTGGG
AAGCGTTTGAGGAAGGGATGAGCTTTGGGGCGTTGGGTGCCACATTTGAC
GGAAATCTCACGGCGACACTCTCATTACGGGATCGATTGGACTGGTGCCT
TCGGGACGCGAGAGAAAGGATTGCACGGTCTCCTGGCTCCACCTGGATTC
TTAAACCAAGCGTCACTAATAAAGGCGCAGAAATAACAGTCCTAAAGGAC
TACCAAAGCATGAGGGACATTGTACGGACATGGCCTGACGTGCGTGAGTG
GGTTTTGCAGGCATACATAGTCACTCCTCTTCTATACCGTCGCAGAAAAT
TCCATCTGAGGTGTTACGTTTTGGCAGTAGGAAATCTTTCTGTATACGTT
TGGCGGCAAATTTTATTGCTCACCTCGACTGTGGAGTACGATTCAGAGGA
TCTTTGCAATCAGCTAGCGCACGTAACCAACACCGCCCGACAAGTGGAAG
ACGGGGAGATGTGCCCAGCGGTGGAGGATTGTGTTTTCTCATTGGATGAC
TTGGTTGATGATTTGAGAACAAAGCAGCATTTAAGTTTGGAGCAGGCGGG
GGGAATTGTCAGCGATATCCGCGGGGGGATTGAAAATGTGACGGGAGAGC
TTTTCAAGGCTTTGCACGGGGAGCGGACAGTCTTTGCTCCAGTTCCTCAG
TGCTTTGAGCTCCTGGGTCTTGACTTTTTGGTGTCTATGGACCACACAAG
TTCAAATGAATCAGGTCTCCCAGTATTGACACCACAGGTGCATCTACTAG
AGGTGAATCCAGGACCGGATTTCAAGCAAACAGGGCCGCGTCTGAAGTCG
GTGATAGAGGGGCTGGTGGAGGCTACACTGGACGTGGCCGTCCTTGAAGA
CGGAGAAATCAGCAAAGATTTGGCGTTGGTATACCAATCCTTGCACCCAG
AGAATGGGGAGGTCGGGATGCGCTTATTAGAGGGGTGACAGAGTGAAAGC
TAACACATTTCTTTCGACATCGAGCAGTGTCTCCACATCTTCGCACGCTA
TGCACCCAATGATTTTTACACTGCGTAAAGTTAACAGAGTGTTGCTGTAC
ACAAGTTCCTGCATCCGTCACTACTGGCACGAACTTTGACCCCCAGATCC
CCCCTTTACGATGTATGCCCTCACTACTCTGTAATAAGCGCCAAATATTA
TCTGCGCCTCAATCCATGCCATCTGCTTCTTCTGGTCGCACATTTGAATA
CCGTTCGACACCAAAAGAATTGATGTCGAGATTTCTGATCCCAATGGTTC
CCAGCAGCTTCTCGGGCAACTC

Coding sequence (CDS) from alignment at CM002455.1:423459..425480-

>rna162 ID=rna162|Name=rna162|organism=Nannochloropsis gaditana|type=CDS|length=1371bp|location=Sequence derived from alignment at CM002455.1:423459..425480- (Nannochloropsis gaditana)
ATGGCATGGGCGTGGAAAACATCAGCCATAGAAAACACTCGCTTTGAAAT
CAAATATACCCCATACTTTTCTTCAATTGGCCCTGTCTCTACTGCCTGTC
CCACCTATGATCCCCGGGCTACCCGTATCTGGGTGAAGATCGAGTGCGAC
TACACAAGACGTATCCTCGTCAAAGCCATTACCAAGCGGCAGTCCCGTTT
ATGTGGTGTTAAAAATCAAAAGGATGCCTCCATATTATGGGCAGACTACG
AGGATCTGGATTTCGACCGAGTCCTGGCAAGTGGAGGTAAAATTAAAGCC
AACTCGTACTTGGTCCGGAAAGGGCTAGCGCGGAAAGCTCAATTAGCCTA
TCATCTACGCAAATACATGGCGAAAAGACCAAGGTCAATACTGCATGGAG
CAATCCCTGAGACCTTAGTCATCGAAACTTGGGAAGCGTTTGAGGAAGGG
ATGAGCTTTGGGGCGTTGGGTGCCACATTTGACGGAAATCTCACGGCGAC
ACTCTCATTACGGGATCGATTGGACTGGTGCCTTCGGGACGCGAGAGAAA
GGATTGCACGGTCTCCTGGCTCCACCTGGATTCTTAAACCAAGCGTCACT
AATAAAGGCGCAGAAATAACAGTCCTAAAGGACTACCAAAGCATGAGGGA
CATTGTACGGACATGGCCTGACGTGCGTGAGTGGGTTTTGCAGGCATACA
TAGTCACTCCTCTTCTATACCGTCGCAGAAAATTCCATCTGAGGTGTTAC
GTTTTGGCAGTAGGAAATCTTTCTGTATACGTTTGGCGGCAAATTTTATT
GCTCACCTCGACTGTGGAGTACGATTCAGAGGATCTTTGCAATCAGCTAG
CGCACGTAACCAACACCGCCCGACAAGTGGAAGACGGGGAGATGTGCCCA
GCGGTGGAGGATTGTGTTTTCTCATTGGATGACTTGGTTGATGATTTGAG
AACAAAGCAGCATTTAAGTTTGGAGCAGGCGGGGGGAATTGTCAGCGATA
TCCGCGGGGGGATTGAAAATGTGACGGGAGAGCTTTTCAAGGCTTTGCAC
GGGGAGCGGACAGTCTTTGCTCCAGTTCCTCAGTGCTTTGAGCTCCTGGG
TCTTGACTTTTTGGTGTCTATGGACCACACAAGTTCAAATGAATCAGGTC
TCCCAGTATTGACACCACAGGTGCATCTACTAGAGGTGAATCCAGGACCG
GATTTCAAGCAAACAGGGCCGCGTCTGAAGTCGGTGATAGAGGGGCTGGT
GGAGGCTACACTGGACGTGGCCGTCCTTGAAGACGGAGAAATCAGCAAAG
ATTTGGCGTTGGTATACCAATCCTTGCACCCAGAGAATGGGGAGGTCGGG
ATGCGCTTATTAGAGGGGTGA

Synonyms

Publications