|
|
Properties
| Property Name | Value |
| Product | protein of unknown function DUF1336 |
| Orig transcript id | gnl|cribi|Naga_100013g59.9751.mrna |
| Orig protein id | gnl|cribi|Naga_100013g59.9751 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| CM002455.1 | supercontig | CM002455.1:420895..424017 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna161 ID=rna161|Name=rna161|organism=Nannochloropsis gaditana|type=mRNA|length=3968bp CCGCCCGCCTCTCGCCCGATCACATCGTAGTCTCCAGTAATGAAATGCAC CACGGGATCCCACGCCCAGCGTGGGTTGATGCTTTTGCGACGTGTTATTG TGCAAATCCTGCGTTTTCACATGAAGATCGATCGTTTTCATTCCAAGTAC ATCCCTTTGAAGGCTTAAAGTGCATGCACGTCTGTAGAAATGGATGGGAA GTGGCTGTCGAGGAAGGCGCCTGCAGGACCAAGTGAGGGCAACGTGTCGA AAAAGAAGCAGGTGGACTTCTCCTCCTATCGACATGTACCGACTGCATCT TCTTCCTCTGATTGCGAGGACTGTGACTGGGAGGACGAGAAACGAGCGCA CAGAATTCAGGGCACGAAACCGGTGCCGTCCCCTGTCTCGCCGCCGCCTA TGATGAAAATTCCCAGAAAACCCAGCGCTGCACCGTCGATAGGGAAAAAT TTGCAGTCCCCCTTTGTGAAAAAACTGCCCATGTCGCCATTGCCGCCCGT GCCCATGGGCTCCGGTGGTAGAGACGCCATCAAGAAAAAGAGAGAGGAGC TTCACAGGAAGCAGCAATTAAAGGTGAGGAGGGAACAGGAAGAAGGACAA GAAAGACAGAAAAAAGTCAAGGTCGACGAGGCTATGCATGGAGCTGTACC TGCAGCTTCTCCTGGTCCTGTAGCTGCAGGCATTCCAGTCAAACGGGGCC GGTTGCGACGAGCACGGACAGACGATAGCAGTGACGAAGAAAACGACAGG AATAATGCCAGTAGAGAAGGGGAGGCGAGCAGCGGCATCGCCGACGATTG CTCCACTAGAGGGATCCAAGGCGGTAATCGGATTGATGGAAAGGTACCAG CACCCTATAGTGACGAGGAGCTGGTCTTGCTCCTTGATGAGGCGCCCCGG GACGATGGGGCCCGTGGGGTCAATGGGTCTCGGGCCAAGATTTGGAAAGG GGACCTGGGGAATCGGGAGGCGGGGATGCCGTTGGATGATGGCCAGGATC GGACAAATAGAAAAATAGGAAAGGCGCGAAAGGAGACAGCAGGGGGAGTG GACCAAGCGGAGGGTGTGGGGTCCGACAGCGACGCCGATCAGGAAGAGAG CGACTGGGACGACGAGGAGGCGCTTGGGGCTGAGAAGATAATCAAGGCGT GCGAGCTGATTTCTCAACGCTTGATGGAGGAGATCCGGCACTGGGGCCAG AAGCACGCGGAGGATCGACTCGATCTGACGAACATGGAGGACGACCGGGG GGTGCCGAGGCCTGAGAGTGAGGGTACGAGTGCGACTACCACGGGTGGAG GAAGAGGCGTCCATGAGGGTGCAGGGCAGAGCCTGCACAAGACAGCCCGA GTACAGGCCGACATCCTTGCCAGGGCCTGTCCGGGGGTGGATTTCAAGCC CTACCAGCTCGTCGGGATTAACTGGCTATTCCTCCTCCACCAGCTCGACC TGGACCTCCCCCGCTCCCTCCTTCCCGAGGAGGCCTTTCGAGGACGCTGG GCCAAGGAAGACTTGCGGTTGAACGGTGTGCTAGCCGATGACATGGGCCT GGGAAAAACAGCCCAAACCATAGCATTCCTGGCTTATTTGTGTGCACTGA AGCCCAGAACGCTAACCCACTTAATCATCGTCCCCGCGTCGGTGTTAACG AACTGGCAGAATGAGTTCGAGAAATTTGCACCGGATTTGGACGTTTTCGT CTATCACGGAAGCGCCAAGGAGCGCGCAGACTTGCGTGCGGAGTACGAGG AAGAAATGCAACGACTGGAGAAGGAGGGCCGGGGGGCTGGATCCCGAGTC GCGGACGTCGTGCTCGCCACATATACGTACTGGGAGAAGGAGACGGCAGA GCTGGACCGAAAATTTTTAAACAGGATCTCGGTGGAGTACATGGTCTTGG ACGAAGGGCATTCCATCAAAAACGTCAAGTCCCAACGGTTTCAACGTTTG CGGAAACAGAAAGCGAAGCGACGCTTGTTGCTCACGGGGACGCCGTTGCA GAACGATGTGAGAGAGGTGCTGGCCCTTCTGTCCTTTCTGAATCCCCGCA TCCTCTCGCTTCATGGTACGGAGGGTGCCACTGTCGACGGATTTTGGCAA AGCCTGGTGGCGGGGGGGAAGGAGGGGAGGAGAGATAAAGGCGACGGATC GGGCAGTGGACTGAGGGGCGAGAAAGCGGCCATGGACAGGTTGAAACGCA TCTTCGCCCCTTTCGTCCTCCGAAGGCTGAAGACGGACGTGTTGGATCAG CTGACGAAGAAGAGCCAGGAAGTGGAGATGATTCCCTTGACGGCCTCCCA GCGAGCCGTGTACGAAAGCGTGACTCAGAGGCACTTCCAGCGTTTGGAAG AGTCTGCCAACCGTCGCGCTGTCCAAGCTCTGACATTGCCCGTTTTGAAT CTTGCGTCGGAGAGGCATGGGTCGAGGGAGGAGGGCAGGGAATCGGCGGT GATTGCGAAGGATGACGGGGAGACAAAGCCACGAAAGAAGGGGAGGAAAA AGAAAGAGGACGCAGAGGGACAGGTGCTTGGGTCCGGTCAGACCGGCAAC GCGATAGCAGAGGGGCGGAAGAAGCGTATGCTGCGCTCCACAGAAGCATC CAGGCAGAAAGACCGAGACAGCCAGGATGCGACTGCTCAAGCCGCGGCGG GGGCGGCCTCACTTTCCGAACGGGACGCTGGGCACATTTTTACCGAGTGG CGCAAGGTGGCCAATCACACCTTGCTCCTTCGCCGTCGCTTTTCCGACTC GGCCTTGGTGGAAATGGCAGCAGTCTTGCATCAAACCGGGTACTTTGGAT GGGAATGCTCGGTCGCCATGGTGCGTAAAGAATTGGAAGGCCTCTGCGAC TACGAGCTGCATGCGATCGCGGAGGACGAACGGCGTTTAGCCCATCTCAC CCTGCCGACAGACACCTTGTTCGATTCTTGCAAGTGCCAGCGCCTGCGGG TGCTTCTGCCCCAGCTTTTGGCGGAAGGGCACCGCGTTTTGATTTTCTCG ATGTGGACCCGGGTACTGGACATCTTGGGGGCTATGCTGGAGAGGGTGCT GCACGTTCCTTACCTCCGCCTGGACGGTCAGACGCCGGTGGCTGAGCGTC AAGAGATGATCGATCAATACAATACACCCAACGCCGAGGTGTCCATTTTT TTACTTTCCACGAGGGCGGGGGGCTTGGGCATCAACCTGACAAGCGCCGA CACCGTGATCCTTCACGATCCTGACTGGAATCCCAGCATGGACGCGCAGG CAATCGACCGGTGTCACCGCATCGGACAGAGTAAGCCCGTGACAGTTTAC AGATTGGTGGCGGAAGGGACTGTAGACGAGCGGATCTACCAACGGGCCTT GGGCAAGAGGGAAAAGACAGAGGCCTTGCTGGAAAATGGCGGGCTGGACG ACGAGGAAGGAGGCGATTTGGGAGGAGAAGGTGTAGGAGGCGGAAAGGAA ATATCCAGGATTGTGCAAAGCGAATTTTTGGCATATCAGGAGGCACGGGA AAGAGCCAAGCAGGCTAGGGCAGCGGAAGAAGAGGAGACCAGTGACTCGA CGTTTAATAGTAGCGAAGATGAAGCGGATAGAGAAGGTGAAGAGAATGAG AACGAGCCTGTGCAATATGTCGGGAGCAGAAATGGCCCCGCTGAAACGAA TGGAGATATCACAAAACGTTCCACTCCACAACGACGATATTCTTCAGTGC TGGAGGATATAGTGAGCGAAGAGGGCGACGAGGACGACGGTCAGGACGTA TAAATACGGTCCCATGCGTAGGGGATATGGTAATTCGAAGGATAATTGCG GGCACAATCTGCGAAATGTTGGTGTATTTACACTTTCGAACTTGTGAACT GGATAATGAAGAGGGTGTCATTGTATTGGTTGCGATGTTGGGTATCGTCA ACTCCAGTACGCATGCCCCCAAAGCAAAGTACCCTGCTAGCATGCAGCGA CATCAACTACGTTCGGTC back to topprotein sequence of rna161 >rna161-protein ID=rna161-protein|Name=rna161|organism=Nannochloropsis gaditana|type=polypeptide|length=831bp MPSVRAATAPIELRKSRNSSIRAFLCTLKDSVSKGQGSFGVLAVALLSPF AFSVLPWSLGVLIVFLVGIVIEAGPGVALDYLTHLEETESRGGSFDVCSA LGGAPGSQRPPSHHDQALDSAVILQRGVTSPTTRRGREHEFQSSLLEARV EVREFRVVERKFASYKISVSCRVPVGIGSSSDAAGTESACAWSVWKRYSD FEDLRERLDNPCDKHGYEGQPLPPIPPKTLFKNLSPRFLARRAQSLEEFL VRIITRADICDEPVLRMFLGLAPLPGRSQSLSLSQECVEKKRERGSVVGE EEGREGQEEEGRGQVDRDADERRSEDDGDTDSHEDEGTDGYESREDPALS APHCSSSLVSVAAAGLSLPTFCRPKNEADEKHHVEQDTPRARGSSVDDPK RRGNRGSSLSMDGNEVSTEEEDGAEAALPDVRAETGDGSKLSARSAPEER CENDESQGSGYRQTFSSASTDDGMDDEEREARSAKHVLETVRALSGHSPS QWDRLGPSSGLPFLGPTDRNRPSDDPSAAPAAASPPPSPHQSVRAPGASV QDFASWGLRLQHPNAYYDPGRGNSFRVRGRRYLHDRLKTPAGPPVGELVI AYVFRISPENPGQREDHIASRGRMAEILREMQDMKGRDGKHTFFFLLNFQ VPGDPPLSMVTVFALPRDRRPAEDGCFWTLFDRFVDFPMDDIKGEGKSDR GGRYALSDFKNKRFKLIPSIVDGPSMIKWAVGNKPTILGQKLTQRYFRGE DYVEVDVDIASSALASQIVSLCRGYAKYLQVEMGILLQGEDETAELPEKL LGTIGIRNLDINSFGVERYSNVRPEEADGMD back to topmRNA from alignment at CM002455.1:420895..424017+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna161 ID=rna161|Name=rna161|organism=Nannochloropsis gaditana|type=mRNA|length=3123bp|location=Sequence derived from alignment at CM002455.1:420895..424017+ (Nannochloropsis gaditana) GACTGCCCAATCATTACATCCCCCTTCCACTGACCATAGGCCCTGCAGCG
GTACCCCTCGCTCGTTCAATCTAAAGTTTTTTCTTTGTGACCAGGCATCT
CTCATGAACGTCGAGGCCAGCCCCACAAAAAAATATAAAGTTGCAACTGC
ATAAATCGGTGATTCGTACTTTATTTGCATCTATGCCTTCAGTTCGTGCG
GCGACAGCTCCCATCGAGCTACGAAAAAGCCGCAACAGTAGCATCCGTGC
TTTTTTGTGCACTCTGAAGGACAGCGTCAGTAAAGGTCAAGGCAGTTTTG
GCGTCCTAGCCGTGGCTCTACTCAGTCCATTCGCGTTCTCTGTATTACCG
TGGTCTCTTGGTGTATTGATCGTCTTCTTGGTAGGGATCGTTATCGAAGC
AGGCCCAGGCGTGGCACTGGACTATCTAACGCAtctggaggagacagaga
gccGGGGCGGATCATTTGACGTGTGCAGCGCTCTTGGCGGTGCACCTGGT
TCGCAGAGACCTCCATCTCATCACGATCAGGCCTTAGACTCGGCGGTCAT
CCTCCAACGAGGCGTCACTAGCCcgacgacaaggagaggccgAGAACATG
AATTCCAAAGCTCCTTACTTGAGGCGCGGGTAGAAGTCAGAGAGTTTCGC
GTCGTTGAAAGGAAATTTGCAAGCTACAAAATATCGGTCAGCTGCCGTGT
TCCGGTTGGCATCGGGAGCAGCAGTGATGCGGCGGGCACTGAGAGCGCTT
GTGCTTGGTCGGTGTGGAAGCGCTACTCGGATTTCGAGGACCTTCGGGAA
CGCCTGGACAACCCTTGCGATAAACACGGGTACGAGGGACAGCCGCTGCC
TCCTATACCGCCCAAGACCTTGTTCAAAAACCTCTCGCCACGATTTCTGG
CCAGAAGAGCTCAGAGCCTTGAGGAATTCCTCGTCCGGATCATCACGCGG
GCGGATATTTGCGACGAGCCTGTGCTTCGGATGTTTTTGGGGCTGGCACC
GCTACCGGGGCGATCTCAGTCGCTCTCACTGTCGCAAGAATGTGTTGAGA
AGaagcgggaaagggggtctgtcgtgggagaggaggaaggaagggaaggg
caggaggaggagggaaggggtcaagTCGACCGAGACGCAGACGAGCGACG
AAGCGAGGATGACGGGGATACGGACAGtcacgaggacgagggaacAGATG
GGTATGAGTCCAGAGAAGACCCTGCGCTTTCTGCGCCTCATTGTTCTTCG
TCTCTGGTttcggtggcggcggcaggctTGTCCCTGCCCACCTTTTGCCG
CCCCAAAAACGAAgcggacgagaaacaccacGTTGAGCAAGATACTCCTC
GGGCGCGAGGTTCATCGGTAGATGATCCAAAGCGTCGCGGTAACAGAGGT
AGTTCGCTGTCCATGGATGGCAACGAGGTctcgacggaggaggaggacgg
cgcagAGGCCGCACTGCCAGACGTGCGTGCGGAAACAGGGGATGGAAGCA
AGCTGTCCGCGCGAAGCGCGCCCGAAGAAAGGTGTGAGAACGATGAGAGC
CAAGGCTCAGGCTACCGGCAGACCTTTTCCTCGGCGAGCACGGACGACGg
gatggacgacgaggaacgGGAGGCTCGGAGCGCCAAGCACGTGCTGGAAA
CGGTGCGTGCGCTCTCCGGCCATTCGCCCTCCCAGTGGGACCGCCTTGGG
CCTTCCTCCGGCCTCCCATTTCTGGGGCCCACTGACAGAAATCGGCCTTC
GGACGACCCATCGGCTGCTCcagccgctgcctccccgcctccctcccctc
accaGTCGGTCCGGGCGCCAGGCGCGTCCGTCCAAGACTTCGCCTCCTGG
GGATTGCGTTTGCAGCACCCCAACGCCTACTACGACCCGGGGCGTGGGAA
CAGCTTCCGGGTCCGCGGAAGGCGCTACCTGCACGATCGGCTCAAAACCC
CGGCCGGCCCTCCCGTTGGTGAGCTGGTCATTGCCTACGTCTTCCGAATT
TCTCCAGAAAATCCTGGGCAGCGCGAAGACCACATTGCCAGTCGCGGCCG
GATGGCGGAGATACTGCGCGAGATGCAAGACAtgaaagggcgggatggCA
AGCACAcgttttttttcttgttgaATTTCCAAGTACCCGGAGATCCGCCT
TTGAGTATGGTGACCGTTTTCGCCTTGCCTAGAGACAGGCGACCAGCGGA
AGACGGATGTTTTTGGACACTCTTCGATCGTTTCGTGGATTTTCCCATGG
ACGATATtaaaggagaaggcaagtCTGACAGAGGGGGGCGGTATGCTTTG
TCTGACTTCAAGAATAAACGTTTCAAGCTAATCCCCAGTATCGTGGACGG
GCCCTCCATGATTAAATGGGCGGTCGGGAATAAGCCGACGATTCTGGGAC
AGAAACTCACGCAACGCTACTTTCGTGGGGAGGACtacgtggaggtggat
gtCGACattgcttcctccgctctgGCAAGTCAGATCGTCTCGCTGTGCCG
GGGTTACGCCAAGTACCTGCAGGTGGAGATGGGTATTTTACtacagggag
aggacgagacagCAGAGTTGCCCGAGAAGCTGCTGGGAACCATTGGGATC
AGAAATCTCGACATCAATTCTTTTGGTGTCGAACGGTATTCAAATGTGCG
ACCAGAAGAAGCAGATGGCATGGATTGAGGCGCAGATAATATTTGGCGCT
TATTACAGAGTAGTGAGGGCATACATCGTAAAGGGGGGATCTGGGGGTCA
AAGTTCGTGCCAGTAGTGACGGATGCAGGAACTTGTGTACAGCAACACTC
TGTTAACTTTACGCAGTGTAAAAATCATTGGGTGCATAGCGTGCGAAGAT
GTGGAGACACTGCTCGATGTCGAAAGAAATGTGTTAGCTTTCACTCTGTC
ACCCCTCTAATAAGCGCATCCCGACCTCCCCATTCTCTGGGTGCAAGGAT
TGGTATACCAACGCCAAATCTTTGCTGATTTCTCCGTCTTCAAGGACGGC
CACGTCCAGTGTagcctccaccagcccctCTATCACCGACTTCAGACGCG
GCCCTGTTTGCTTGAAATCCGGTCCTGGATTCACCTCTAGTAGATGCACC
TGTGGTGTCAATACTGGGAGACC back to topCoding sequence (CDS) from alignment at CM002455.1:420895..424017+ >rna161 ID=rna161|Name=rna161|organism=Nannochloropsis gaditana|type=CDS|length=2496bp|location=Sequence derived from alignment at CM002455.1:420895..424017+ (Nannochloropsis gaditana) ATGCCTTCAGTTCGTGCGGCGACAGCTCCCATCGAGCTACGAAAAAGCCG CAACAGTAGCATCCGTGCTTTTTTGTGCACTCTGAAGGACAGCGTCAGTA AAGGTCAAGGCAGTTTTGGCGTCCTAGCCGTGGCTCTACTCAGTCCATTC GCGTTCTCTGTATTACCGTGGTCTCTTGGTGTATTGATCGTCTTCTTGGT AGGGATCGTTATCGAAGCAGGCCCAGGCGTGGCACTGGACTATCTAACGC AtctggaggagacagagagccGGGGCGGATCATTTGACGTGTGCAGCGCT CTTGGCGGTGCACCTGGTTCGCAGAGACCTCCATCTCATCACGATCAGGC CTTAGACTCGGCGGTCATCCTCCAACGAGGCGTCACTAGCCcgacgacaa ggagaggccgAGAACATGAATTCCAAAGCTCCTTACTTGAGGCGCGGGTA GAAGTCAGAGAGTTTCGCGTCGTTGAAAGGAAATTTGCAAGCTACAAAAT ATCGGTCAGCTGCCGTGTTCCGGTTGGCATCGGGAGCAGCAGTGATGCGG CGGGCACTGAGAGCGCTTGTGCTTGGTCGGTGTGGAAGCGCTACTCGGAT TTCGAGGACCTTCGGGAACGCCTGGACAACCCTTGCGATAAACACGGGTA CGAGGGACAGCCGCTGCCTCCTATACCGCCCAAGACCTTGTTCAAAAACC TCTCGCCACGATTTCTGGCCAGAAGAGCTCAGAGCCTTGAGGAATTCCTC GTCCGGATCATCACGCGGGCGGATATTTGCGACGAGCCTGTGCTTCGGAT GTTTTTGGGGCTGGCACCGCTACCGGGGCGATCTCAGTCGCTCTCACTGT CGCAAGAATGTGTTGAGAAGaagcgggaaagggggtctgtcgtgggagag gaggaaggaagggaagggcaggaggaggagggaaggggtcaagTCGACCG AGACGCAGACGAGCGACGAAGCGAGGATGACGGGGATACGGACAGtcacg aggacgagggaacAGATGGGTATGAGTCCAGAGAAGACCCTGCGCTTTCT GCGCCTCATTGTTCTTCGTCTCTGGTttcggtggcggcggcaggctTGTC CCTGCCCACCTTTTGCCGCCCCAAAAACGAAgcggacgagaaacaccacG TTGAGCAAGATACTCCTCGGGCGCGAGGTTCATCGGTAGATGATCCAAAG CGTCGCGGTAACAGAGGTAGTTCGCTGTCCATGGATGGCAACGAGGTctc gacggaggaggaggacggcgcagAGGCCGCACTGCCAGACGTGCGTGCGG AAACAGGGGATGGAAGCAAGCTGTCCGCGCGAAGCGCGCCCGAAGAAAGG TGTGAGAACGATGAGAGCCAAGGCTCAGGCTACCGGCAGACCTTTTCCTC GGCGAGCACGGACGACGggatggacgacgaggaacgGGAGGCTCGGAGCG CCAAGCACGTGCTGGAAACGGTGCGTGCGCTCTCCGGCCATTCGCCCTCC CAGTGGGACCGCCTTGGGCCTTCCTCCGGCCTCCCATTTCTGGGGCCCAC TGACAGAAATCGGCCTTCGGACGACCCATCGGCTGCTCcagccgctgcct ccccgcctccctcccctcaccaGTCGGTCCGGGCGCCAGGCGCGTCCGTC CAAGACTTCGCCTCCTGGGGATTGCGTTTGCAGCACCCCAACGCCTACTA CGACCCGGGGCGTGGGAACAGCTTCCGGGTCCGCGGAAGGCGCTACCTGC ACGATCGGCTCAAAACCCCGGCCGGCCCTCCCGTTGGTGAGCTGGTCATT GCCTACGTCTTCCGAATTTCTCCAGAAAATCCTGGGCAGCGCGAAGACCA CATTGCCAGTCGCGGCCGGATGGCGGAGATACTGCGCGAGATGCAAGACA tgaaagggcgggatggCAAGCACAcgttttttttcttgttgaATTTCCAA GTACCCGGAGATCCGCCTTTGAGTATGGTGACCGTTTTCGCCTTGCCTAG AGACAGGCGACCAGCGGAAGACGGATGTTTTTGGACACTCTTCGATCGTT TCGTGGATTTTCCCATGGACGATATtaaaggagaaggcaagtCTGACAGA GGGGGGCGGTATGCTTTGTCTGACTTCAAGAATAAACGTTTCAAGCTAAT CCCCAGTATCGTGGACGGGCCCTCCATGATTAAATGGGCGGTCGGGAATA AGCCGACGATTCTGGGACAGAAACTCACGCAACGCTACTTTCGTGGGGAG GACtacgtggaggtggatgtCGACattgcttcctccgctctgGCAAGTCA GATCGTCTCGCTGTGCCGGGGTTACGCCAAGTACCTGCAGGTGGAGATGG GTATTTTACtacagggagaggacgagacagCAGAGTTGCCCGAGAAGCTG CTGGGAACCATTGGGATCAGAAATCTCGACATCAATTCTTTTGGTGTCGA ACGGTATTCAAATGTGCGACCAGAAGAAGCAGATGGCATGGATTGA back to top
|