rna1609, rna1609 (mRNA) Nannochloropsis gaditana

Overview
Namerna1609
Unique Namerna1609
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1127
Alignment locationCM002457.1:1049991..1051577 +

Link to JBrowse

Properties
Property NameValue
Productshort-chain dehydrogenase
Orig transcript idgnl|cribi|Naga_100024g27.4359.mrna
Orig protein idgnl|cribi|Naga_100024g27.4359
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1049991..1051577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100024g27gene1546Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1609rna1609-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29101.1cds1605Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1609 ID=rna1609|Name=rna1609|organism=Nannochloropsis gaditana|type=mRNA|length=1127bp
ACGGACGCGAGAGTAAAGATTTAAGAATAATTAGGAAGATAAAGGTAGGA
AGGATAACTATCCTATGATTGTGCTTTAATGCACGCATGCAGTTGCCTGA
TATGCAATCATCATTTGTTCAAAAAGCGATAGCAGGAGGTTATAAGAAGT
TGCTTTAGCTAAAGATGAGAGCGTGCTAAATCCTGGACGAGACATTCTCA
ATGCGAAGTGCTCAAACACTAGCCAAGAGATGTGATTTGAGGACTTTTAA
TCGTTGTTAGGTTGATTCTCCCGGCCATCTTTTCTTGCTTTTTCTCTCTC
CGTGGTGCCCGATGCAACTTGACGGGCTGTGGGAAAGTCTAAGGACTGCC
GACTGACACTACGAAACCCAGACTATCTATGGTTACCTTGAAGAATGTTA
AAGGCTTTGCAGATCTATGCTGATAACATGCAGGCCGATGGGCAAGCACG
ACAATCGTGATAATCGTCATCACAGTGAAGAAAAGCGTCGTCATGGTAAC
AGAGATGACGACGACATCGTGCGACAGGATCATGAGCAGCGAAAGAAGGG
GAAGAAACGGAAGCGGGAGGAAGAAGTGGAGATAGAAGCGGGGTCCCTCT
CGTCGTCCTCTTATTCCTCGGATTCATCTAGTGAAAGCAGCGTGACCTCA
TCTTCATTAGATTCCCGTTATAGCAAGCGAAAGTCGTCGAAGAAAGAGAA
AAATGAAAGGGAGGAAAAAGGAAAAACGAAGAAAGGAAAGAAGGCCAGGA
AGGAGACAAAAAAGCGAAAGCACAAGAAAGACAAGAAAAAAAAGTATGAG
AAAGAGGACAAGAAAAAGAACAAAAAGCGGAAGAAAGAGAGTAAACGAAG
GAAGTCTTCCTCCCACACGGCGGCCACCAGTAGCGACTCAGAAAGCGATG
ACGATGCTCCACGTTCTGCAATTTCGGGGAAGAAGATAAAGATGAAGTTG
AAGCGAGACGCAGCAGATATGCAAATGGAGAGAGGCCGAAAAGATTTTCT
GCGTTTCATGAATTCACAGTTTGATTGACCACTGAGATTAAAGGCTCAAA
GTAATGCGGCCCACTCAATATGGATCATTGGAAAATAAATTCAAAAATTG
AACCCAAAAACAAAGTATCTTTTTTTT
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protein sequence of rna1609

>rna1609-protein ID=rna1609-protein|Name=rna1609|organism=Nannochloropsis gaditana|type=polypeptide|length=512bp
MPTLIPMRQMMPLSTDVSPLNVVCVGSGIAFLYAVLVGLWRWCTYEARTA
ETYLRLAALAAAPLLPLCMFVFTSHKSLEGCKWHLLLAALLLGWDAYVLH
RIWRNFVVGPRFQSVDLHGKVAIVTGANTGIGRETSRFLAEMGAKVILAC
RSKDRAEEAIRAILWESGSKIKPSQLEFWPLDVSSLQSVGDFAAAFQEKA
GHKGLDILINNAGVMLNERRLTSEGLEATLATNHFGHFLLTLLLFPELEK
VSDGRVVNVSSSLHKVPRAFNFDDPLYESSAYSLFGAYGQSKLANVLFTF
ELQRRLEVLQSNEANKVGRKGERGGGDLAVRRVVTANAVHPGNVQTEVAR
NMPWYLYWGQRICSPILWCFSKNPAQGAYTSVHVATSPALRGIGGKFFVN
CDVTGDVSAVARDPSVAGRLWAMSEEACGLTAATGDATVGSSSVNSGPRK
KRKTNAPAGTMSNGDEARHTTPKTSLRNVRTGANGSKGTSPGVRRSARLR
VGGRAERKIGSK
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mRNA from alignment at CM002457.1:1049991..1051577+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1609 ID=rna1609|Name=rna1609|organism=Nannochloropsis gaditana|type=mRNA|length=1587bp|location=Sequence derived from alignment at CM002457.1:1049991..1051577+ (Nannochloropsis gaditana)
TTACGTTATGCCCACGCTTATTCCAATGAGACAGATGATGCCTTTGTCTA
CCGATGTGTCCCCGCTTAATGTTGTTTGTGTGGGCTCTGGCATTGCATTT
CTTTATGCGGTGCTGGTGGGACTGTGGCGTTGGTGCACATACGAGGCCAG
GACCGCTGAGACTTATTTGCGTTTAGCAGCCTTGGCGGCTGCACCATTAT
TACCGCTGTGCATGTTCGTATTTACAAGCCACAAAAGTCTAGAAGGCTGC
AAGTGGCACCTTTTGTTAGCAGCATTGCTGCTGGGATGGGACGCGTACGT
GTTGCATCGCATTTGGCGTAACTTCGTCGTAGGGCCCCGTTTCCAGTCCG
TGGATCTGCACGGTAAAGTCGCCATCGTCACCGGTGCAAATACTGGAATT
GGACGGGAAACGTCCCGTTTTCTTGCGGAAATGGGCGCCAAAGTTATTCT
GGCGTGTCGGTCAAAAGATCGAGCGGAAGAAGCCATCCGAGCAATTTTGT
GGGAATCAGGTTCTAAAATTAAACCCAGTCAATTAGAATTCTGGCCGTTG
GATGTGAGCAGTTTACAGTCCGTTGGAGACTTTGCAGCCGCATTTCAAGA
GAAAGCGGGCCACAAGGGATTGGACATACTCATAAACAACGCGGGCGTAA
TGCTGAATGAGAGGAGGCTCACTtccgagggcctggaggcgaCCCTCGCC
ACCAATCATTTCGGCCATTTCCTCTTGACattgctccttttcccagaACT
TGAGAAGGTCTCGGACGGCCGCGTGGTCAACGTTTCCTCAAGTCTCCACA
AAGTCCCCCGCGCTTTCAATTTTGACGACCCTCTGTACGAGTCCAGTGCC
TATTCCCTGTTCGGAGCCTACGGTCAGAGCAAGCTCGCCAACGTTCTTTT
CACTTTCGAGCTTCAACGACGCCTTGAAGTACTCCAAAGCAACGAAGCAA
ACAAAGttgggagaaaaggggaacggggaggcggagatctGGCGGTGAGG
AGGGTCGTAACCGCCAATGCCGTCCATCCGGGCAACGTGCAGACAGAGGT
GGCGCGAAACATGCCTTGGTACTTGTACTGGGGTCAGAGAATTTGCAGTC
CGATTTTATGGTGCTTTTCCAAGAATCCGGCCCAGGGGGCCTATACCTCG
GTCCATGTGGCGACCTCGCCGGCATTGCGAGGCATAGGTGGAAAGTTTTT
TGTGAATTGCGACGTCACGGGCGACGTCTCTGCGGTAGCGCGAGACCCCT
CCGTGGCAGGCCGGCTATGGGCCATGAGTGAAGAAGCGTGCGGACTGACG
GCCGCCACAGGAGATGCCACGGTCGGCTCCTCTTCTGTCAACAGCGGCCC
tcggaaaaagaggaaaacgaaCGCTCCCGCAGGTACTATGAGCAACGGGG
ATGAGGCCCGCCATACTACTCCCAAAACCAGCTTGAGAAACGTTCGCACA
GGGGCAAATGGATCGAAAGGAACAAGCCCTGGAGTCAGGAGGAGTGCTCG
TCTCCGTGTTGGCGGGCGGGCCGAGCGAAAAATCGGTTCTAAATAAAGAG
CCTGACAATAAAAAGTACTAACCCATGACGATGCACG
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Coding sequence (CDS) from alignment at CM002457.1:1049991..1051577+

>rna1609 ID=rna1609|Name=rna1609|organism=Nannochloropsis gaditana|type=CDS|length=1539bp|location=Sequence derived from alignment at CM002457.1:1049991..1051577+ (Nannochloropsis gaditana)
ATGCCCACGCTTATTCCAATGAGACAGATGATGCCTTTGTCTACCGATGT
GTCCCCGCTTAATGTTGTTTGTGTGGGCTCTGGCATTGCATTTCTTTATG
CGGTGCTGGTGGGACTGTGGCGTTGGTGCACATACGAGGCCAGGACCGCT
GAGACTTATTTGCGTTTAGCAGCCTTGGCGGCTGCACCATTATTACCGCT
GTGCATGTTCGTATTTACAAGCCACAAAAGTCTAGAAGGCTGCAAGTGGC
ACCTTTTGTTAGCAGCATTGCTGCTGGGATGGGACGCGTACGTGTTGCAT
CGCATTTGGCGTAACTTCGTCGTAGGGCCCCGTTTCCAGTCCGTGGATCT
GCACGGTAAAGTCGCCATCGTCACCGGTGCAAATACTGGAATTGGACGGG
AAACGTCCCGTTTTCTTGCGGAAATGGGCGCCAAAGTTATTCTGGCGTGT
CGGTCAAAAGATCGAGCGGAAGAAGCCATCCGAGCAATTTTGTGGGAATC
AGGTTCTAAAATTAAACCCAGTCAATTAGAATTCTGGCCGTTGGATGTGA
GCAGTTTACAGTCCGTTGGAGACTTTGCAGCCGCATTTCAAGAGAAAGCG
GGCCACAAGGGATTGGACATACTCATAAACAACGCGGGCGTAATGCTGAA
TGAGAGGAGGCTCACTtccgagggcctggaggcgaCCCTCGCCACCAATC
ATTTCGGCCATTTCCTCTTGACattgctccttttcccagaACTTGAGAAG
GTCTCGGACGGCCGCGTGGTCAACGTTTCCTCAAGTCTCCACAAAGTCCC
CCGCGCTTTCAATTTTGACGACCCTCTGTACGAGTCCAGTGCCTATTCCC
TGTTCGGAGCCTACGGTCAGAGCAAGCTCGCCAACGTTCTTTTCACTTTC
GAGCTTCAACGACGCCTTGAAGTACTCCAAAGCAACGAAGCAAACAAAGt
tgggagaaaaggggaacggggaggcggagatctGGCGGTGAGGAGGGTCG
TAACCGCCAATGCCGTCCATCCGGGCAACGTGCAGACAGAGGTGGCGCGA
AACATGCCTTGGTACTTGTACTGGGGTCAGAGAATTTGCAGTCCGATTTT
ATGGTGCTTTTCCAAGAATCCGGCCCAGGGGGCCTATACCTCGGTCCATG
TGGCGACCTCGCCGGCATTGCGAGGCATAGGTGGAAAGTTTTTTGTGAAT
TGCGACGTCACGGGCGACGTCTCTGCGGTAGCGCGAGACCCCTCCGTGGC
AGGCCGGCTATGGGCCATGAGTGAAGAAGCGTGCGGACTGACGGCCGCCA
CAGGAGATGCCACGGTCGGCTCCTCTTCTGTCAACAGCGGCCCtcggaaa
aagaggaaaacgaaCGCTCCCGCAGGTACTATGAGCAACGGGGATGAGGC
CCGCCATACTACTCCCAAAACCAGCTTGAGAAACGTTCGCACAGGGGCAA
ATGGATCGAAAGGAACAAGCCCTGGAGTCAGGAGGAGTGCTCGTCTCCGT
GTTGGCGGGCGGGCCGAGCGAAAAATCGGTTCTAAATAA
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Synonyms
Publications