rna1604, rna1604 (mRNA) Nannochloropsis gaditana

Overview
Namerna1604
Unique Namerna1604
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3250
Alignment locationCM002457.1:1041354..1041830 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100024g33.4313.mrna
Orig protein idgnl|cribi|Naga_100024g33.4313
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1041354..1041830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100024g33gene1541Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29055.1cds1600Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1604rna1604-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1604 ID=rna1604|Name=rna1604|organism=Nannochloropsis gaditana|type=mRNA|length=3250bp
CGCACAGGAGTTCCGGGTTAGGGCACCAAGAATGCTGATGGATGCGCTTT
GGAGAGGCACTAGTCGGTAGCGCTATGATATTGGTCATTTGATGACCGAG
CCGGGGTCTTGTCAAAGCGATCAGCTTGAAGAACAATGCGAAGTTTGAGG
CCCCCGCGACGGCTACTGTCCTCGGAGGACGATATCGAGGTTGAAGAAGA
AGAGGAAGTAAACATTGATACGGAGGACGAGGGATTAAGCGAGCAAGAAC
TGCCGTCCCGCGAGCTTGCGGCGGAACGCAATGGCGACAACGACGGCAAG
TTGGACGCCTTCAAGACCAAAGCCCTTCCACGTCGCACTTCATCCTCCTC
TCCATATTACAGTACAACACAAGCAACACATCCACGACTGTTTGAAGGAT
TCTTGGCCTCGGCAACGTCGGCTGCGAGGTCCGCTCACGCTCATCCAGCG
CAGTTACCTGTGCACCCACCCCTCATGTCTTCCCCCCCCCACGTCTCATC
CACCGCATTCGGTCGAAGCGCCGCAAGCGTCATCAGTGCCGCCAGTAATG
TGACAAGTGTTGCAAGCAAAAAGGGCCTGCACGAAGAGATCTCCCGTTTG
CACCAAGTGCTGGGGCTCCAGGCACAGGAACTCGAGATGGTCCACGAGTC
ATTGCGGGCCAAGGACGACACTCTCAGGCGCGCCCAGGGTCAAAGCGATG
ATCTTCTTCAGGAAGCTAGACAGGCACGGGTAGATCTGAAACGATGTCGA
AAGAGTAAATTGGAGACCGAAGAAGCCCTGGAAGAGGCACAGAAAAGGGT
GCTTGTTTTGCAAGAGAAAGTGAAAATACTGGAGATGGCGGTGCGGCGGA
CGGGCGAGGTTGGCAACAGCTCCCCGGGAAGTCCCCAAGGACCATTGGAG
GAGGCCGGGTCCGTGGCCCGTACAAAGGCCAGAGCAGAAGCAAAGGCCAG
AGAGGCGGCGGAGCTGGTGGATGGGATGAGAGCGAGGCTGGACGACGGGA
TGGAGCAGCTCCGGGAGTGCCTGGCGACGATCGAGACGCTCGAAACGTCC
TTGCACAGGTCGGAACGCGAGAAGATCCAGGCGCAAGGGGAGGTGCGAAG
ACTGACATTATCTTTGTCGTCCCAAGACGCCGGCGGCAGCGAAGTGACTG
CATGGAAGGCCAGGGCGACGGCAGCAGAGGCGCGAGCCAAGGCGATGGAG
GAGGAGTTATCGTCGCTACGGGAGCGAGAATCCCAAACCCCGGCGGCGGC
TCGTACAATCATGGAGCTGGAGGCCCGGTGTCAGAACCTGGAGGAAGTCT
TGCGCAAATCGAAAGAGGTGGATCGGGAGGCTCTGGAAGCGGCCCAGAGG
GCCACCGCGCGGTTGGAGAGTGAGCGAGACGCCTGGCGTGGGAAGGAGAT
GCGGCGGCGACAGGAGGTCACAGACGCCAAGTCTCAAGCGGAGACATACC
GGCGCAAAGCGCTTAAGCTAGAGGACATGTTGGAGTCGCGGAGAGCGGCG
GAAGAAGGAGGCGGGAAGCGTCGCGGTGGGGCCAGGGGCCACGACCAGGC
CAAGGCGGCAGAAGGCGTCGCCCGTGCTGCGGAGCGAGCACTGAGGAGTC
AGCAAGAAGAGCTAAAAGCTAGGCAGACGGAGGCCGCTGACCTGAGGTCC
AAGTGCCGGGATTACCTGCAGGCTATGAACGGCGTGATGGACGATTTGGA
GCGGATGAAAGCGCAGCAGGAGGAAGAGCAGCAGCGGACCAAGTCAAGGA
AGGAATCCCTGGACAAGGAAAGGAGAGAGAAAAGTCGGGAGGCGCTGAGC
AAGGCTCAAGCCCGCTGCCTTGCGTTCGAGAAAGAGAGCTTGGAGGCACG
GAGGATCGTGAAGGCCGAGCAAGAGAAGGCGCGGGAGCTTGAAATGGCGG
TGTCCGAAGCAGCGGCTCGGATCGTGGCCTACGAAGAGGAGATGGCAGGA
ACGCGGGCAGAGATGTCGAGGACCGTCCACCAGCTCGAGGAGCTGCAGGC
GGTATTGAGGCAGCAAGAGGAGCTGGCCGGCCAAAATGGAGAACAAGGAG
AATCGCGACCGAGGGGGCAGCCAGGACGAAGTCCACAGCCGATGGCGTCC
AAGGCGCCACAAAGACAAGAGGAAGAGGCACTACCAACGTCAGCACATGC
CTCTACCTTTCATTTACACCCGCATAACGGGCTCGGAGAAATGTCACAGA
AAATCATCCCGAGGAAGCCGAGCCAGGGGCCTCCGGAGATCAGGGAGGAC
CGATTGACAGAGGTACTGATGCGCACTACCCAGCAAGTTCAAAGGGCGAC
TCGTAGCACACACACCGTGTTCCCCGCGACGTCCGATGGCACTACTGCAG
TGTCTCCCTCCACAGTTGTGGCCAGCCACGTCCCTCCCATCGGGCCGCCC
GCTTTCGCCGCCTCGTCCGCTTCGTCGGCCTTGGCGGCCTTCCAAAGGCT
GCGGGACCAACTCCGACGATCCCACAGGGACCACGGCCTTCCCATACCCG
TTTCCGAACACCAAGAACAAGAAGGAGGCATTCCTTTTTCGTCCTTGTTT
CCGAGCTCGGCGGGAAGGGAAGAGGAGCGGACGCAGGAGCACGGTGAGCA
TCGGGCTGACAAGCAGGACGCGGGCGGCAAAGGCGGTGCGGGGGGGCTCC
AGGCAGCGCTGGGAGATGAAGAGTCAGAGGGAGAGGAGGGAAACGAAAGG
GTCTTGCCTGAATCGTTGGAGCAAATCCTGCAGCGCTGTCGTTCCCTCAA
GGCCGATCTGCTGACGGCCGTAGATTGTGAAGAGGAAAGAGAGCTATCCC
TGGGAGAAACGCCGCAGAAGAAACGCGAGGTCTCCAAGACGGCGAAGCGG
ACAAAGAGGAAGGTGCCAAGGAAGGAAACAGCATGATCAACTGATGGATG
GGCTGTCACTGGATCGAAGAAGATGAAGCAGCTTCCGTGTACGTGACCTC
GACAAGTAATTGCCAGCCTAAGGGGGGGGGCATGTCGGCTGCCGGGGCCT
GGCTACCCACTGTTAACCAGAGACATGAGAAGAGCGTAAGCGGAGACTCT
GGTTTTATTTCTTTGTTCGCGTCGTCCCCTACATTCTTAAGATTTGACTC
ACGAAAGGATCCGTTAGTGACGATGATAGTCGTAGACACACAAGAGCTGC
TTCGGTATGTATGTAGCTTTCCATCCCTAGGTTTCCCATTCCGACCATTT
TCTTTCTTCCCCTGCATCCCAGAAATTGGAAAATGAAACACAAGGCGGTT
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protein sequence of rna1604

>rna1604-protein ID=rna1604-protein|Name=rna1604|organism=Nannochloropsis gaditana|type=polypeptide|length=158bp
MGSRIYCMSRQGGGEGGRSWRLDGRGSLVRALTKHSNFKRTSFVNRLVFH
FPISGMQGKKENGRNGKPRDGKLHTYRSSSCVSTTIIVTNGSFRESNLKN
VGDDANKEIKPESPLTLFSCLWLTVGSQAPAADMPPPLGWQLLVEVTYTE
AASSSSIQ
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mRNA from alignment at CM002457.1:1041354..1041830-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1604 ID=rna1604|Name=rna1604|organism=Nannochloropsis gaditana|type=mRNA|length=477bp|location=Sequence derived from alignment at CM002457.1:1041354..1041830- (Nannochloropsis gaditana)
ATGGGCTCACGCATCTATTGTATGAGTAGACAGGGGGGGGGGGAGGGAGG
AAGGTCGTGGAGATTGGATGGACGAGGAAGTTTGGTGCGTGCGCTGACGA
AACACTCTAATTTCAAGAGAACCAGCTTTGTAAACCGCCTTGTGTTTCAT
TTTCCAATTTCTGGGATGCAGGGGAAGAAAGAAAATGGTCGGAATGGGAA
ACCTAGGGATGGAAAGCTACATACATACCGAAGCAGCTCTTGTGTGTCTA
CGACTATCATCGTCACTAACGGATCCTTTCGTGAGTCAAATCTTAAGAAT
GTAGGGGACGACGCGAACAAAGAAATAAAACCAGAGTCTCCGCTTACGCT
CTTCTCATGTCTCTGGTTAACAGTGGGTAGCCAGGCCCCGGCAGCCGACA
TGCCCCCCCCCTTAGGCTGGCAATTACTTGTCGAGGTCACGTACACGGAA
GCTGCTTCATCTTCTTCGATCCAGTGA
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Coding sequence (CDS) from alignment at CM002457.1:1041354..1041830-

>rna1604 ID=rna1604|Name=rna1604|organism=Nannochloropsis gaditana|type=CDS|length=477bp|location=Sequence derived from alignment at CM002457.1:1041354..1041830- (Nannochloropsis gaditana)
ATGGGCTCACGCATCTATTGTATGAGTAGACAGGGGGGGGGGGAGGGAGG
AAGGTCGTGGAGATTGGATGGACGAGGAAGTTTGGTGCGTGCGCTGACGA
AACACTCTAATTTCAAGAGAACCAGCTTTGTAAACCGCCTTGTGTTTCAT
TTTCCAATTTCTGGGATGCAGGGGAAGAAAGAAAATGGTCGGAATGGGAA
ACCTAGGGATGGAAAGCTACATACATACCGAAGCAGCTCTTGTGTGTCTA
CGACTATCATCGTCACTAACGGATCCTTTCGTGAGTCAAATCTTAAGAAT
GTAGGGGACGACGCGAACAAAGAAATAAAACCAGAGTCTCCGCTTACGCT
CTTCTCATGTCTCTGGTTAACAGTGGGTAGCCAGGCCCCGGCAGCCGACA
TGCCCCCCCCCTTAGGCTGGCAATTACTTGTCGAGGTCACGTACACGGAA
GCTGCTTCATCTTCTTCGATCCAGTGA
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Synonyms
Publications