rna1597, rna1597 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1597
Unique Name	rna1597
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1354
Alignment location	CM002457.1:1024395..1028366 +

Link to JBrowse

Properties


Property Name	Value
Product	morc family cw-type zinc finger protein 4 isoform 2
Orig transcript id	gnl\|cribi\|Naga_100024g38.4342.mrna
Orig protein id	gnl\|cribi\|Naga_100024g38.4342
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:1024395..1028366 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100024g38	gene1536	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1597	rna1597-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29084.1	cds1593	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:1024395..1028366+
coding sequence from alignment at CM002457.1:1024395..1028366+

mRNA sequence

>rna1597 ID=rna1597|Name=rna1597|organism=Nannochloropsis gaditana|type=mRNA|length=1354bp
CCAAAAATGCACTATGCTATTCCTCGCCCTCACCACTTCCTCTTGAAATC
AATATCAGCCACACACAGCAGGATTGCCAAACTTTTATTGAGAACGGTGC
CGCAGGCTGACGCTTACGTGCACGCGCAGCAAGCGTCCGATAGACCTGAC
GTGAACATGCTGAATGACAACATCAAGTTTGTTGTCTCTACGAGCAACAC
CTGCTTTTGCATCGCGGGCTTAGTCTTGGGAGGTCTAGCAGCATATCTTT
ACTACGCAACATCCCTTGCTGCGGTGACATTGACCAGTCTTACCCAAGGA
TGGATCATGTGGACGATGTTGGTCGGCCTTGGGCTTGTCTTTTTATCCTG
TCTTGGATGCTTTGGAGTAAAACGTCAAATCGTCCGCGTCGGGCCGTGCG
GAGGAAGGAGGTTGCTGTCATTGTACCAGCTTCTACTGTTGGGACTACTC
TTTGCTTTTACAACGGCATTTCTGGCTATGCGGACTCTTCACACGCAGGT
CCCTCTTCTCTTGGATAATCCAGACGCAGTTTACGCTCGCTCAGAGCAAA
ATTTGCTCGTCCCTTACTTCAATCGTCTTTACTTTAAAACCAGAAAAGCT
GCGGTTAGGGCGCACGACGGAGGGGCGGGATCTTTTAATTGGTTTGCAGA
CTGGACGCGTCAGAGCTGCCCTTTGTCCATGGATGTTGGTACCTGCACCT
CGTGTGGTACTGACGGCGACGGCGGTACCAGTGTGCCCTATACAGATGGA
TGTTGTCCTCGGGATGACCTCTGCACCGCGGGAAACCTAGATGCCTGTCC
ATATCACCGCTGTCGGTTGGGTGTGGCCCGCTTTCTAAGTAAGCGCCTGG
GAGCGTTGCAAAAGTACCTCAACTTTCTGTTGATACTACAATTGATTGTT
CTCATAAGCACATGCATGCTCATCTGCTACAATCCGCGCGACTCCTTTGC
AGAGCTATTAGCCAAGACAGGTGTCGTCATCATGCACGAACGCACAGATT
TTTTGCCCAAAGATGAGCATCGTACCTCTCGCATTCTTAAACCTCCGACG
ACAAAAAAGGAGCAACCATCTCACGTAGGTGTAAAAAGGTCACAGAACTC
AGCGATCGCGAGTCCTACAACAACTTCGCCTGTGGTGGATATCGAAGGGA
AGAACAATACTACAATGTATGGAGGGCGTCGATGTGGTTCTCGGCGCTCG
CCTGCTCATATGGTATGAAAAATGAATGAAATAGGGAAAAAAGCTTGCTC
ATCGATGAATGTTAATCTAATGACAGAAAATACTACATAGGAGATGTCTC
AAAGACAAATGAACAATTAACCCTCGTAGCAATCGAGATGGGGAGGTTGA
CACG

protein sequence of rna1597

>rna1597-protein ID=rna1597-protein|Name=rna1597|organism=Nannochloropsis gaditana|type=polypeptide|length=965bp
MQKRVPVRQHFEGAELESDETPRTSGEPLSLPAAVGTRARIPPPVAPSYV
SHPSSSPPRPVDPSMPASTFMAIDNSYLSTLSQNHVWLFGALAELLHNSL
DAGSTRLHIDVREEDGGEGGVMVLEIKDNGVGMGPDEMEGMFRLGKTYAR
DRKNVERVGRYGCGFKQGSLRIGSTAVVLSKSLRHKSLVMGILSNEPHLR
DENAAPVCRVVTLSPDTMEPDPLYTSRQAFREASELIARYSFVTPERHWS
LLLNAWAAGESGTVVYIQGMERGDPEGGGVWRELRVDRAEGDLQLVTRTG
KKHLNTRGALLAHDVPIDYSLRAYLQVAFLQHRMRITLLGKDVPTPDLLE
TLLHVRRYNLLQDEPTRKPVIASVGFSSEAKRLGLGGAMFFCTNVLIASY
VRQEIGITNPREGMGVLAVVHLDPRHYETQHSKQSFRRPNPALEKIEERL
GRVWTQYISQELAREARIGKSKAVEIPSRAKLKVTDFIQCEHCGKWRMVT
QSYVMQFAGKDTKWYCWSQGSPVTSCEAPEAAISQEGEEVMVDFKTGSQA
EYLTAIVDGGEMSYADKMPGKRKHGPASNKCGSQGKGQSVEDSRERERKS
KGEKSRTKKKHHGLDLDQKVEGVQKKRRKKCHRDDYSDGKDGAGRKPRFL
ISGNDTTLLKPLSLPHLNLVKLSDGRKVVLKNVAVSPVPEARSAFREELK
KLRRLNHENLVPVVAARIEEGKALSAVGFAFEEALVDLDHVLLKPHSLVT
LEDRLLTACKIAAGLDYLHAHGLVHGALRPANILVSFPMPMLQVVKLTDQ
GIAHRGLSKGVPNRCGSADRITFTAPERLSIWSSSMATAEARSRSQSKTL
PPLVLHPSGDIWSMGVLLLELMVGRKAWGAARDPKELRRLVADFSIAEFS
GWRIFENFKSRLPADSGWEERLNGIKQILQACLRRKASERLGSHQLVNKL
AVLSADILYRPARGP

mRNA from alignment at CM002457.1:1024395..1028366+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1597 ID=rna1597|Name=rna1597|organism=Nannochloropsis gaditana|type=mRNA|length=3972bp|location=Sequence derived from alignment at CM002457.1:1024395..1028366+ (Nannochloropsis gaditana)
CCGAAATCACCCGTAAGATAGCTCTTCAAATGTCAAAAGTAATTTGATAC
GTTCCGCCATTAAGCCCGAAGGTGGCGGGGTGCGTTACCACCACCTACTC
GCGTaagagtggaggaggaaatgggggacGTTACCACGGACAAGAAGACC
TTCCGCCTTTTTACGAAAAACAACCTACAGCAAGAATATATCTGCCCACT
TTATCTGGATACTGGGCGTCATACATCTATGTAAGTGGTTTTCAATGTGT
GGCAAGAGCTGACACTCGGTCTGCCGaatcccctccgccttcccagtCGG
CAGGTTATCTCTGTCTACGCGTCCCTAGTAGTATTGCTTGTAAATCAGTC
TGGACGATCATCGGTCCATCAAACCCGTTAAGCCATCATTTATACTATCT
ACGAACATCCAGACTCGACACGGCGTTTGTAATATCGCATTACAAGCGTG
AGGGGGTGGATACGAAGACGCTACCAGCAATCGACGTAGGTGTACCCGAA
GCTGCCTCCGAATCAGAGAAGCAGCACTACGTTGGCTTTTGTAAATATTT
AAGCCACGGGCTTCAAGGAAAGAGCTTGCCAAAATATGCCGAGATACGCC
TGCCTCAGAGCCGGAATCTGTGTGTATGGCTTTGCCCACCTTCGGATTCC
TCAGCTTTCGAAGCAACAGATAAGCTAAAGCTTTTAATCCCACCCGTCCT
CTTGAGTTCGTTCACATTCTCgccgccatcttcccccctaccTTCACCTG
TCTCCTCTGGGAATGCAAACTCTATTGTAGAGGAAGGTGGCTCTCTCGAC
ACGCTCCACCACGCTGGTGCTGCGACAGATGATAACACCACCGGAATGCA
GAAGCGTGTACCGGTACGACAACATTTCGAGGGTGCAGAGTTGGAAAGCG
ACGAGACACCCAGGACTTCTGGGGAACCTCTTTCACTACCTGCGGCGGTT
GGGACTCGAGCACGGATTCCTCCGCCTGTTGCCCCTTCTTACGTAAGTCA
TCCctcgtcatctcctccacgcccggtGGATCCCTCGATGCCCGCCTCCA
CATTTATGGCGATCGACAATTCTTATTTGAGCACCCTCAGCCAAAATCAT
GTCTGGTTGTTTGGAGCGCTGGCAGAGTTGCTGCATAATTCCCTGGACGC
AGGGAGCACGCGCTTGCATATCGACGTccgcgaggaagacggaggggaag
gcggggtcaTGGTCCTCGAGATCAAGGACAACGGCGTGGGGATGGGCCCC
gatgagatggaggggatgtTTCGATTGGGTAAAACGTATGCTCGAGACCG
GAAAAACGTGGAAAGGGTGGGCCGATACGGCTGCGGTTTCAAGCAGGGAA
GCCTTCGGATCGGTTCCACGGCCGTTGTGCTGAGCAAAAGCCTGAGGCAT
AAGTCATTGGTCATGGGCATCCTGTCAAACGAGCCCCACCTTCGGGACGA
GAACGCGGCACCCGTGTGTCGTGTGGTTACATTGAGCCCCGACACCATGG
AGCCTGACCCGCTGTACACGTCCCGCCAGGCCTTCCGAGAGGCCTCCGAG
CTGATAGCTCGCTACAGCTTCGTCACTCCAGAGCGGCATTGGTCTCTGTT
GCTCAACGCCTGGGCGGCGGGAGAGTCGGGCACCGTGGTCTACATCCAAG
GCATGGAACGAGGGGATCcggagggcggtggcgttTGGCGTGAGCTGCGA
GTGGACAGGGCGGAAGGCGATCTACAGCTGGTGACGCGTACGGGGAAAAA
ACATCTCAACACCCGCGgtgccctccttgctcatgACGTGCCTATTGACT
ATTCCCTTCGAGCGTACCTCCAAGTAGCCTTTCTGCAACACCGCATGAGA
ATCACCTTGTTGGGAAAAGACGTTCCGACGCCAGACCTCCTCGAGACCTT
GCTGCACGTACGGCGTTACAACCTGCTCCAAGACGAGCCAACCCGAAAAC
CCGTCATAGCCTCCGTAGGTTTCTCATCCGAGGCGAAGCGATTGGGCTTG
GGCGGGGCCATGTTTTTTTGCACCAACGTTCTGATCGCGTCCTACGTGCG
ACAGGAGATCGGGATTACAAATCcgcgggaggggatgggTGTGCTCGCCG
TCGTGCATTTAGATCCCCGCCACTACGAAACCCAGCATTCCAAGCAATCC
TTCCGTCGCCCCAACCCGGCCCTCGAGAAAATTGAAGAGCGGCTCGGACG
TGTCTGGACTCAGTATATTTCCCAAGAGCTTGCGCGCGAGGCAAGGATAG
GGAAGAGCAAAGCGGTAGAAATACCGTCCAGGGCCAAGTTAAAAGTGACG
GATTTCATACAGTGCGAACACTGCGGCAAGTGGCGAATGGTGACACAGTC
GTACGTAATGCAATTCGCAGGGAAGGATACCAAATGGTACTGTTGGTCGC
AAGGATCACCAGTGACGAGCTGCGAGGCCCCCGAGGCAGCGATCTCtcaa
gagggggaggaagtgatggtGGATTTCAAAACGGGTAGTCAGGCCGAATA
TTTGACAGCCATCGTTGACGGCGGAGAAATGTCTTACGCAGACAAGATGC
CAGGGAAGCGAAAGCATGGGCCTGCAAGCAACAAATGTGGATCACAGGGT
AAGGGGCAAAGCGTGGAAGATAGTAGGGAGAGAGAACGAAAGTcgaaggg
agagaaatcCCGgacgaaaaagaagcatCACGGCCTGGACTTGGACCAGA
AGGTAGAGGGCGTGCAAAAAAAGCGGCGCAAGAAATGCCATCGCGATGAC
TACAGCGACGGAAAAGACGGCGCAGGTCGCAAACCTCGCTTTCTTATCTC
GGGAAACGACACCACCTTGCTGAAACCCCTGTCACTTCCTCATCTAAATT
TGGTCAAACTTTCAGACGGACGAAAGGTTGTCTTGAAGAACGTTGCTGTG
TCTCCTGTGCCCGAAGCCCGCTCAGCCTTTCGAGAGGAATTGAAAAAGTT
GCGGCGGCTAAATCATGAAAACCTCGTGCCGGTAGTGGCGGCCCGCatcg
aggagggaaaggccttGTCGGCGGTGGGTTTCGCTTTTGAAGAAGCGCTT
GTAGATCttgatcacgtcctcctgaaGCCACACTCGCTAGTTACGCTGGA
GGACCGATTACTGACCGCGTGCAAGATCGCGGCCGGATTGGACTACTTGC
ACGCTCACGGGCTGGTTCATGGTGCATTGCGTCCAGCAAACATCCTAGTC
TCTTTCCCGATGCCGATGCTGCAGGTGGTCAAGCTGACGGACCAAGGTAT
TGCCCATCGTGGGTTATCCAAAGGTGTGCCGAATAGATGCGGGAGCGCGG
ACAGGATTACCTTCACTGCTCCTGAGAGATTGAGTATTTGGTCGTCGTCA
ATGGCCACGGCTGAAGCAAGAAGTCGATCCCAATCCAAGACGCTGCCACC
CCTTGTGTTGCATCCATCGGGTGACATATGGAGCATGGGCGTTCTGCTCC
TCGAGTTGATGGTGGGACGCAAAGCGTGGGGCGCAGCGAGGGATCCGAAG
GAGCTTCGTCGGCTAGTGGCTGACTTTTCGATAGCCGAATTTTCCGGGTG
GCGCATATTCGAGAATTTCAAGTCGCGGCTACCGGCAGACTCGGGATGGG
AAGAGCGTCTTAATGGAATCAAACAAATTTTGCAGGCGTgtttgaggagg
aaagcctcTGAACGCTTAGGATCACACCAGCTGGTAAACAAGCTCGCAGT
TCTGAGCGCGGACATCTTGTATCGCCCGGCGCGAGGTCCTTGAAGGCATG
GTAGATGTGGCATCCAAGCTTGAAATGTTGAAAACTAAACAAGAAGTAAT
TAAACAGGAAAAGCTTTTATATTTGACAATGAGGAAATGTATAGAGTTGG
TAACAAAGCGTACATTTGGCATGGGGAGAGATCCAGACGAAGCGTACTCG
TCGGTCCCGGTGTAAGCTACACATGTAATGCAGCCATGTTCACTTTAATG
CATTTAATTATAACACACGTGT

Coding sequence (CDS) from alignment at CM002457.1:1024395..1028366+

>rna1597 ID=rna1597|Name=rna1597|organism=Nannochloropsis gaditana|type=CDS|length=2898bp|location=Sequence derived from alignment at CM002457.1:1024395..1028366+ (Nannochloropsis gaditana)
ATGCAGAAGCGTGTACCGGTACGACAACATTTCGAGGGTGCAGAGTTGGA
AAGCGACGAGACACCCAGGACTTCTGGGGAACCTCTTTCACTACCTGCGG
CGGTTGGGACTCGAGCACGGATTCCTCCGCCTGTTGCCCCTTCTTACGTA
AGTCATCCctcgtcatctcctccacgcccggtGGATCCCTCGATGCCCGC
CTCCACATTTATGGCGATCGACAATTCTTATTTGAGCACCCTCAGCCAAA
ATCATGTCTGGTTGTTTGGAGCGCTGGCAGAGTTGCTGCATAATTCCCTG
GACGCAGGGAGCACGCGCTTGCATATCGACGTccgcgaggaagacggagg
ggaaggcggggtcaTGGTCCTCGAGATCAAGGACAACGGCGTGGGGATGG
GCCCCgatgagatggaggggatgtTTCGATTGGGTAAAACGTATGCTCGA
GACCGGAAAAACGTGGAAAGGGTGGGCCGATACGGCTGCGGTTTCAAGCA
GGGAAGCCTTCGGATCGGTTCCACGGCCGTTGTGCTGAGCAAAAGCCTGA
GGCATAAGTCATTGGTCATGGGCATCCTGTCAAACGAGCCCCACCTTCGG
GACGAGAACGCGGCACCCGTGTGTCGTGTGGTTACATTGAGCCCCGACAC
CATGGAGCCTGACCCGCTGTACACGTCCCGCCAGGCCTTCCGAGAGGCCT
CCGAGCTGATAGCTCGCTACAGCTTCGTCACTCCAGAGCGGCATTGGTCT
CTGTTGCTCAACGCCTGGGCGGCGGGAGAGTCGGGCACCGTGGTCTACAT
CCAAGGCATGGAACGAGGGGATCcggagggcggtggcgttTGGCGTGAGC
TGCGAGTGGACAGGGCGGAAGGCGATCTACAGCTGGTGACGCGTACGGGG
AAAAAACATCTCAACACCCGCGgtgccctccttgctcatgACGTGCCTAT
TGACTATTCCCTTCGAGCGTACCTCCAAGTAGCCTTTCTGCAACACCGCA
TGAGAATCACCTTGTTGGGAAAAGACGTTCCGACGCCAGACCTCCTCGAG
ACCTTGCTGCACGTACGGCGTTACAACCTGCTCCAAGACGAGCCAACCCG
AAAACCCGTCATAGCCTCCGTAGGTTTCTCATCCGAGGCGAAGCGATTGG
GCTTGGGCGGGGCCATGTTTTTTTGCACCAACGTTCTGATCGCGTCCTAC
GTGCGACAGGAGATCGGGATTACAAATCcgcgggaggggatgggTGTGCT
CGCCGTCGTGCATTTAGATCCCCGCCACTACGAAACCCAGCATTCCAAGC
AATCCTTCCGTCGCCCCAACCCGGCCCTCGAGAAAATTGAAGAGCGGCTC
GGACGTGTCTGGACTCAGTATATTTCCCAAGAGCTTGCGCGCGAGGCAAG
GATAGGGAAGAGCAAAGCGGTAGAAATACCGTCCAGGGCCAAGTTAAAAG
TGACGGATTTCATACAGTGCGAACACTGCGGCAAGTGGCGAATGGTGACA
CAGTCGTACGTAATGCAATTCGCAGGGAAGGATACCAAATGGTACTGTTG
GTCGCAAGGATCACCAGTGACGAGCTGCGAGGCCCCCGAGGCAGCGATCT
CtcaagagggggaggaagtgatggtGGATTTCAAAACGGGTAGTCAGGCC
GAATATTTGACAGCCATCGTTGACGGCGGAGAAATGTCTTACGCAGACAA
GATGCCAGGGAAGCGAAAGCATGGGCCTGCAAGCAACAAATGTGGATCAC
AGGGTAAGGGGCAAAGCGTGGAAGATAGTAGGGAGAGAGAACGAAAGTcg
aagggagagaaatcCCGgacgaaaaagaagcatCACGGCCTGGACTTGGA
CCAGAAGGTAGAGGGCGTGCAAAAAAAGCGGCGCAAGAAATGCCATCGCG
ATGACTACAGCGACGGAAAAGACGGCGCAGGTCGCAAACCTCGCTTTCTT
ATCTCGGGAAACGACACCACCTTGCTGAAACCCCTGTCACTTCCTCATCT
AAATTTGGTCAAACTTTCAGACGGACGAAAGGTTGTCTTGAAGAACGTTG
CTGTGTCTCCTGTGCCCGAAGCCCGCTCAGCCTTTCGAGAGGAATTGAAA
AAGTTGCGGCGGCTAAATCATGAAAACCTCGTGCCGGTAGTGGCGGCCCG
CatcgaggagggaaaggccttGTCGGCGGTGGGTTTCGCTTTTGAAGAAG
CGCTTGTAGATCttgatcacgtcctcctgaaGCCACACTCGCTAGTTACG
CTGGAGGACCGATTACTGACCGCGTGCAAGATCGCGGCCGGATTGGACTA
CTTGCACGCTCACGGGCTGGTTCATGGTGCATTGCGTCCAGCAAACATCC
TAGTCTCTTTCCCGATGCCGATGCTGCAGGTGGTCAAGCTGACGGACCAA
GGTATTGCCCATCGTGGGTTATCCAAAGGTGTGCCGAATAGATGCGGGAG
CGCGGACAGGATTACCTTCACTGCTCCTGAGAGATTGAGTATTTGGTCGT
CGTCAATGGCCACGGCTGAAGCAAGAAGTCGATCCCAATCCAAGACGCTG
CCACCCCTTGTGTTGCATCCATCGGGTGACATATGGAGCATGGGCGTTCT
GCTCCTCGAGTTGATGGTGGGACGCAAAGCGTGGGGCGCAGCGAGGGATC
CGAAGGAGCTTCGTCGGCTAGTGGCTGACTTTTCGATAGCCGAATTTTCC
GGGTGGCGCATATTCGAGAATTTCAAGTCGCGGCTACCGGCAGACTCGGG
ATGGGAAGAGCGTCTTAATGGAATCAAACAAATTTTGCAGGCGTgtttga
ggaggaaagcctcTGAACGCTTAGGATCACACCAGCTGGTAAACAAGCTC
GCAGTTCTGAGCGCGGACATCTTGTATCGCCCGGCGCGAGGTCCTTGA

Synonyms

Publications