rna1595, rna1595 (mRNA) Nannochloropsis gaditana

Overview
Namerna1595
Unique Namerna1595
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1699
Alignment locationCM002457.1:1020932..1022510 -

Link to JBrowse

Properties
Property NameValue
Productcysteine synthase
Orig transcript idgnl|cribi|Naga_100024g40.4317.mrna
Orig protein idgnl|cribi|Naga_100024g40.4317
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1020932..1022510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100024g40gene1534Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29059.1cds1591Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1595rna1595-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1595 ID=rna1595|Name=rna1595|organism=Nannochloropsis gaditana|type=mRNA|length=1699bp
CGTCAGGACATCAATCGAGGCGTTGGAAAATGGCAGGATTGAATACCACA
GAGCTAGAGCCTGGTCGGAAGACGAAGCGAAGCATCCGCTTAAGAAATGA
AAGAGGGGGGCCGCCTCTTGCTGACGCTGCGACTGAAGGGCAGCCGGCAC
TCAAGGGAAATTCGACAAGAAGCGTCCACACTGAGAAATCAGCGACACAC
TTGAAAGTAGAGACTGCTGTGGAAAAAGAGAAATACTTCGTTGGCGGAAA
AACGACGCCCAATGCCTCAGGGGAAGAAGGCAAGAAAGTAGGGGTTGTGA
AGAAGGAGGAGACGGAGGAAGACAGCAAGGTCACGGGTGCAGTCGACGGC
TACATGCCACGGCGTTCGCGAGACAAGGCCTTGGGTTCTTCTCTTGTTGA
GTCTCTGTCTTCTAAAAAGATAAAATTGGAGGCGGAATCGAAGCGGAAGC
CCTCGGCATGTCCCGATAAGTTGATCCACGACGCGGACGAGGTTCTCAAA
ATCAAGGCCTTACTCGATAAATGGACAGGACCAGGCACCTCCATCAAAAT
CACAGCCAGTGAGATCAGTCCATACCCGCAACAACGACGTCCGACTCCAT
TTGAAGCACTTTACGTGCGCGACCTGCTGGCACAGCTCCACGGCGAACCA
GAGCGCGATGTGTTGGAGGAAAATTGCAGCGGCCAAGGCACGCTTTTAGA
AAAGCGGGCACGCTCTGTCCTCGATTCTCTTGTCCGCACGATCCTGAGTC
AAAACACCACGGACGCTTTGAGTAAGCGTGCTTTCGAAAATTTGAAGGTA
CGTTACCCGACCTACAAGCAAGTGTTGGCTGCCGCACCCGGCGCAGTAGA
GGAGACGATCAAATTTGCGGGGCTGTCGGATATCAAAGTCGGCCGAATCC
GCGCAATTTTAGAGACCGTGCTGGAAGAGCACCCCGAGAAGTGCCCCGAA
GGGGAGCCAAGTCTGGAGTTTCTCCGAGCGCTTCCGACGGCCGGGATCAA
GGAGTACCTCAGCAAGTTCAAGGGCGTCGGGCCCAAGACAATCGCCTGTG
TCCTGCTCTTCACGATCGGACACGACGACTTCGCCGTGGACACGCACGTC
TGGCATATTGCTAAGAAGCTAGGGTGGGTGCCGGGAGCCGCCTCCAGGGA
GGATGCCTACAAGCACCTGAACAACCGCGTGCCTGACGCTATCAAGTATG
CCCTACATGTTCTCTTGGTGCTTCACGGAAAGAAGTGCGAGTCTTGCTGC
AAAGGCCGCACGCAGCTCGCGCCCGACGGCCCATGTCCCTTGGGAAAGCT
ACAAAAAATGCGCGAAGAGCTGGTCAAAGCCGAAGCAGCGGCAATGGAGG
CTGCGGCCGCGCGGGTGGGACTGGCACACGTCAAGAAGGAGGAAGAGAGC
GTGACCCAGAATACGGCTAGGCAGAAGAGCATCAACAAGGGGAAGGGCGG
TGCCAGGGCCGCGGTCGTGAAAAAAGAGATTGTCGTCAAGGAGGAGTGGG
CGTGAGAATGAGTAGAACGAGGTGGCGTGAGAACCCTTGCATGCAACGCG
TGCGTACATATTACATGTGTACATGAGTAGGGATGATGAAACGAACAGTA
TACAAAGGTGTCATTTACAGATCGCAGTCCTTGGCGTGGCGGACGGAGCA
CATAGTTTCACCATTCACCATTGCAAAGAGCTCAAGTCGCGCCCGATCC
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protein sequence of rna1595

>rna1595-protein ID=rna1595-protein|Name=rna1595|organism=Nannochloropsis gaditana|type=polypeptide|length=420bp
MDLLALLPPFPKPGKHHVLLVVVSAVAASATTAAILLVFSQRRSKFKRTL
GNKCGNRESGYAALIGNTPLIELTSLSRATECRVLAKVEYLNPGGTSKDR
VALRMIQEAEKACLLHPGSTVIEGTSGSTGIALASLCRARGYRCLIVMPD
DQAAEKAHLLKQFGAEVEIVKPASIANPNHYCNRARARAEELGDEAVFMD
QFETMANFRAHYEGTGPEMWEQVVAGYGARPDAFVMSAGTGGTLAGVSRA
WKEREEKVQVFLVDPPGSSLYHKVKHGVCYSTAQRERGVRRHRYDSLAEG
IGVDRLTANFGKARIDEAFHVSDQEAVDMAHFLLQAEGIFVGSSTAINLV
GCVRAARVLGPGHTVVTVLCDSGQRHLTRFWNRRVVEGAELKWPETPPVN
LNFLQKNGPGDKEDLREGGH
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mRNA from alignment at CM002457.1:1020932..1022510-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1595 ID=rna1595|Name=rna1595|organism=Nannochloropsis gaditana|type=mRNA|length=1579bp|location=Sequence derived from alignment at CM002457.1:1020932..1022510- (Nannochloropsis gaditana)
TACAGACATGACGGGAGTTCAAGGCGTATTCTAGAAGTGGGGAAAGCATT
GGACATGGACCTCTTGGCGTTGCTGCCCCCTTTTCCGAAGCCTGGGAAGC
ACCACGTACTGCTTGTTGTGGTTTCAGCAGTTGCTGCCTCTGCGACGACT
GCAGCTATCTTGCTTGTATTTTCCCAGCGTCGATCGAAATTTAAACGTAC
CTTGGGGAATAAATGTGGCAATCGGGAAAGTGGTTATGCGGCATTGATCG
GTAACACGCCGCTCATCGAATTGACTAGTCTATCGCGCGCGACGGAATGC
CGTGTCTTGGCAAAGGTGGAATATCTGAATCCCGGTGGTACCAGCAAAGA
CCGCGTGGCACTGCGAATGATTCAGGAGGCAGAAAAGGCCTGTTTATTAC
ATCCTGGTAGTACGGTGATAGAAGGGACCTCAGGAAGTACGGGTATTGCT
TTAGCCTCCTTGTGCCGTGCCCGAGGGTATCGATGCTTGATAGTCATGCC
AGACGACCAGGCGGCGGAGAAAGCCCATTTATTGAAACAGTTTGGTGCTG
AGGTTGAAATTGTCAAGCCTGCAAGCATTGCCAACCCTAACCATTACTGT
AATCGTGCGCGGGCACGGGCAGAAGAGTTAGGTGACGAGGCAGTTTTCAT
GGATCAGTTCGAGACCATGGCAAACTTTCGAGCCCATTATGAGGGAACAG
GGCCAGAAATGTGGGAGCAGGTAGTGGCTGGATACGGTGCCCGCCCAGAC
GCTTTCGTCATGTCGGCAGGGACGGGTGGCACGCTGGCGGGGGTGTCTCG
GGCCTGGAAGGAGCGTGAGGAGAAGGTACAAGTGTTTCTGGTGGACCCCC
CGGGCTCCTCCCTCTACCACAAGGTCAAACACGGCGTCTGCTACTCGACG
GCGCAGCGGGAGCGAGGAGTGCGGCGCCACCGCTACGATTCTCTCGCCGA
AGGGATTGGGGTGGACAGGCTGACGGCAAACTTTGGAAAAGCGCGGATCG
ACGAGGCCTTCCATGTCTCGGATCAGGAGGCAGTTGACATGGCCCATTTT
CTCCTCCAGGCAGAAGGCATTTTCGTGGGGAGCTCGACAGCGATAAATCT
GGTGGGCTGTGTGCGTGCAGCTCGGGTGCTGGGGCCGGGTCACACAGTGG
TCACGGTCCTTTGCGATTCAGGACAGCGACACTTGACTCGATTTTGGAAC
CGGAGAGTAGTAGAAGGCGCTGAGTTGAAATGGCCGGAGACACCACCCGT
GAATCTGAACTTCTTGCAGAAAAATGGACCAGGAGACAAGGAGGATTTGA
GAGAAGGAGGGCATTGAGAGGATCGGGCGCGACTTGAGCTCTTTGCAATG
GTGAATGGTGAAACTATGTGCTCCGTCCGCCACGCCAAGGACTGCGATCT
GTAAATGACACCTTTGTATACTGTTCGTTTCATCATCCCTACTCATGTAC
ACATGTAATATGTACGCACGCGTTGCATGCAAGGGTTCTCACGCCACCTC
GTTCTACTCATTCTCACGCCCACTCCTCCTTGACGACAATCTCTTTTTTC
ACGACCGCGGCCCTGGCACCGCCCTTCCC
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Coding sequence (CDS) from alignment at CM002457.1:1020932..1022510-

>rna1595 ID=rna1595|Name=rna1595|organism=Nannochloropsis gaditana|type=CDS|length=1263bp|location=Sequence derived from alignment at CM002457.1:1020932..1022510- (Nannochloropsis gaditana)
ATGGACCTCTTGGCGTTGCTGCCCCCTTTTCCGAAGCCTGGGAAGCACCA
CGTACTGCTTGTTGTGGTTTCAGCAGTTGCTGCCTCTGCGACGACTGCAG
CTATCTTGCTTGTATTTTCCCAGCGTCGATCGAAATTTAAACGTACCTTG
GGGAATAAATGTGGCAATCGGGAAAGTGGTTATGCGGCATTGATCGGTAA
CACGCCGCTCATCGAATTGACTAGTCTATCGCGCGCGACGGAATGCCGTG
TCTTGGCAAAGGTGGAATATCTGAATCCCGGTGGTACCAGCAAAGACCGC
GTGGCACTGCGAATGATTCAGGAGGCAGAAAAGGCCTGTTTATTACATCC
TGGTAGTACGGTGATAGAAGGGACCTCAGGAAGTACGGGTATTGCTTTAG
CCTCCTTGTGCCGTGCCCGAGGGTATCGATGCTTGATAGTCATGCCAGAC
GACCAGGCGGCGGAGAAAGCCCATTTATTGAAACAGTTTGGTGCTGAGGT
TGAAATTGTCAAGCCTGCAAGCATTGCCAACCCTAACCATTACTGTAATC
GTGCGCGGGCACGGGCAGAAGAGTTAGGTGACGAGGCAGTTTTCATGGAT
CAGTTCGAGACCATGGCAAACTTTCGAGCCCATTATGAGGGAACAGGGCC
AGAAATGTGGGAGCAGGTAGTGGCTGGATACGGTGCCCGCCCAGACGCTT
TCGTCATGTCGGCAGGGACGGGTGGCACGCTGGCGGGGGTGTCTCGGGCC
TGGAAGGAGCGTGAGGAGAAGGTACAAGTGTTTCTGGTGGACCCCCCGGG
CTCCTCCCTCTACCACAAGGTCAAACACGGCGTCTGCTACTCGACGGCGC
AGCGGGAGCGAGGAGTGCGGCGCCACCGCTACGATTCTCTCGCCGAAGGG
ATTGGGGTGGACAGGCTGACGGCAAACTTTGGAAAAGCGCGGATCGACGA
GGCCTTCCATGTCTCGGATCAGGAGGCAGTTGACATGGCCCATTTTCTCC
TCCAGGCAGAAGGCATTTTCGTGGGGAGCTCGACAGCGATAAATCTGGTG
GGCTGTGTGCGTGCAGCTCGGGTGCTGGGGCCGGGTCACACAGTGGTCAC
GGTCCTTTGCGATTCAGGACAGCGACACTTGACTCGATTTTGGAACCGGA
GAGTAGTAGAAGGCGCTGAGTTGAAATGGCCGGAGACACCACCCGTGAAT
CTGAACTTCTTGCAGAAAAATGGACCAGGAGACAAGGAGGATTTGAGAGA
AGGAGGGCATTGA
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Synonyms
Publications