rna1591, rna1591 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1591
Unique Name	rna1591
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	234
Alignment location	CM002457.1:1006668..1011105 +

Link to JBrowse

Properties


Property Name	Value
Product	udp-glucose 4-epimerase
Orig transcript id	gnl\|cribi\|Naga_100024g45.4308.mrna
Orig protein id	gnl\|cribi\|Naga_100024g45.4308
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:1006668..1011105 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100024g45	gene1530	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1591	rna1591-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29050.1	cds1587	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:1006668..1011105+
coding sequence from alignment at CM002457.1:1006668..1011105+

mRNA sequence

>rna1591 ID=rna1591|Name=rna1591|organism=Nannochloropsis gaditana|type=mRNA|length=234bp
ATGGGCCTCGGAGTCCTGCTCGTGTACGTGATAGTCGACCGATTCTGCCA
ATATCCTGGATCAAAAGTGGTCTACAATTTATACGCGATACACGTTGTCA
ACTCTGTGCTCGTGTCAAAATTCGACGCAGATAGGAGAAGCAATAGTACC
AAGACGCCTTTATTGCTTCGTCAAGTTAAGAACCCGAATGTGTTGACAGT
CGAACGGAGCATCAAGGCAGTGTCAAATCTTTAA

protein sequence of rna1591

>rna1591-protein ID=rna1591-protein|Name=rna1591|organism=Nannochloropsis gaditana|type=polypeptide|length=448bp
MMQLFLLAISILGLASSSSSPKKEVLVLGGNGFMGVYTVIALAFSDRYAV
TIANRNTTYFDSLERLASANITSLHWDRRSEPIEDASEVVAFFEDHPHIH
AIVDFSCYSGDSARNVATFLIKEEVRVGLYVYVSSDSIYEVCSAKRDLEK
PTTEDVDDHRPSGPRSQAECNAADTYGHGKLEAEEVLRELQPVSTWDYIF
LRIPDVVGPRDTSNRWWFYQILIDLQIWIHVPIPYVREDRDGREMSLVYV
KDVARAIVSLISGHDGAFLHRWGANVSDRALTVRNVAINVADHRARTFVQ
IMEDIAKALATSRSSQWPTSSSSTMPSPLVFALNSTTDFPSVKRGPISTT
RARTLLGWEPTPWDEVVLETVEFFQSRILWKDARYAKELQGVLQMVCQQV
AKYIDERTFRDLLLKVYGLNASEMTLTCAGCASDVIVDEEPWSSQIEL

mRNA from alignment at CM002457.1:1006668..1011105+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1591 ID=rna1591|Name=rna1591|organism=Nannochloropsis gaditana|type=mRNA|length=4438bp|location=Sequence derived from alignment at CM002457.1:1006668..1011105+ (Nannochloropsis gaditana)
TCACGGCGAAGCTGCCCGCAACGTCCTGGTAGTCTCGTGGCTATTTCTTG
ATGAACTCTATCTAATCACAACATTACGCCCATTCAGCTGTAGGTATGCC
GTAGTAGCTTTAATTCCCAACGCGTTCCACCTTCCACGAGGCAGCGCCTT
GATTTCTCGTACCATGATGCAGCTTTTTTTGCTCGCTATTTCCATACTCG
GCCTcgcctcatcgtcctcctctcctaaAAAAGAAGTACTCGTCTTGGGA
GGCAACGGCTTTATGGGCGTGTACACAGTCATCGCTTTAGCTTTTTCTGA
TAGATATGCGGTTACCATTGCCAATCGCAATACTACCTACTTTGACTCTT
TAGAGCGGTTGGCCAGCGCAAATATAACCTCCCTGCATTGGGATCGGAGA
AGCGAACCGATCGAAGACGCATCGGAAGTTGTAGCTTTCTTTGAAGATCA
CCCTCATATTCATGCCATTGTTGATTTCTCGTGTTATTCAGGAGATTCAG
CGCGAAACGTGGCTACTTTTTTGATAAAAGAGGAAGTACGTGTGGGGTTG
TACGTTTACGTGTCCAGTGATTCTATATATGAGGTTTGCTCAGCCAAGCG
TGACCTTGAAAAACCTACCACGGAAGACGTTGACGATCATCGTCCGTCCG
GGCCTCGTTCTCAAGCGGAATGTAATGCTGCTGACACCTACGGCCACGGC
AAGCTCGAGGCTGAGGAGGTTCTTCGAGAGCTCCAGCCCGTCTCGACTTG
GGACTACATATTCTTACGCATTCCTGACGTTGTTGGTCCTCGAGACACGT
CTAATCGGTGGTGGTTTTATCAGATATTGATCGACCTCCAGATCTGGATC
CATGTGCCCATCCCATACGTTCGCGAGGATCGAGACGGACGTGAAATGAG
CTTGGTGTACGTCAAGGACGTGGCGCGGGCGATCGTCTCACTGATTTCAG
GTCATGACGGCGCATTTCTCCACAGGTGGGGCGCAAATGTGAGTGATCGG
GCGCTTACAGTCAGGAATGTAGCCATCAACGTGGCCGATCACAGGGCGCG
GACCTTTGTCCAGATCATGGAGGACATCGCCAAAGCCCTGGCCACGTCTC
GGTCTTCCCAGTGGCccacctcatcctcttcgacaATGCCCTCTCCATTG
GTGTTTGCGCTAAATTCCACCACTGACTTTCCAAGCGTGAAGAGAGGGCC
TATCTCCACCACGCGGGCACGCACCCTCTTGGGATGGGAGCCAACGCCCT
GGGACGAGGTCGTGCTCGAGACCGTCGAGTTTTTCCAGTCAAGAATCCTC
TGGAAGGACGCTCGGTACGCCAAGGAGCTGCAAGGAGTCTTGCAAATGGT
GTGTCAGCAAGTAGCAAAGTACATTGACGAGAGGACTTTCCGCGACTTGT
TACTGAAAGTGTACGGGCTGAATGCTTCGGAAATGACTCTGACGTGCGCA
GGCTGCGCCAGTGACGTCATCGTGGACGAAGAACCGTGGAGTTCGCAGAT
AGAGTTATGATCAACATCTACGATCGGATGAAGCAGTATAGAACTGCGAT
GCCAAAACTCCCTTTAATTGTACACGTCATGAACTTGCCTAGGGCCCATA
GCCGAAGCCAAACTGCCCATTTCTTGTCACGTCCCGGATGCGATCTCCCT
GGCTCTGTTCCGGCAGAGGAAGTGGCCACCCGTCTCCTGGAATGTCATTG
ACTGTAATGATAATCTCAGCCTCGTAAGGAAACTCGTACGTCCCAAAGAC
GAAGAAAAACAGGTCTCGAAAACTTGTAAGGTCGCCCAGGGAATGATGAT
CCCCGATTTGCGTCCCGCCCGTCGTAATTGTGAAACCTCCTCGAGCGGTA
AAAAGTGCGCGCCATCTGTACCGTAAATTTTCGGAGCTTAGCCAAAATTG
GATGGTGTCAGTTGTCCGAGGAGCCACTGGGACGGAAAGCTGCCAGTTAC
GAGTCTCAACGTACGATTTTACAACGAGGATCTCGTAAAAATTGTTGTAC
GCCACAGAAAAAGCATTTTGAAACTCCTTTAGCTCACTTATCGAGAGCGT
CAAATCCGAATCTCGGCGCAGATCAGACCCCTCGCGTTGTTTGAACTTCT
TATGGCTAGaatgcttttcttgccaGTCCTGTTTGCTCTGCCGTTTAGCC
GGTGGTGGGACTCGAAAAAGCGCAGATTGGGCGGGGTTTGCATTGACGCG
ATGCGTTACTACGTCACTTATCGTGTAGCCCCAATTGGCCCGAAACTGAC
GAGACAACGTAAGTCCTTGTCCGTAAGCAAATGTGCACGTAGCCGTCTCG
GTAGGCGATTGATTCTCACAGCGAACGCGCCCGTTTGGCAGAGGCACACG
TGGAGTTGCAAATGTGCTCTGGTCGAAGAACAACAACGCTTCCTGCTCCA
AATAAACAAGATCATCGGCTCCCAAGCTGGCCATGGGTCGTCGCCGACAT
TGAAATGATTCCGAACGAGAGGTTTGGTCGTATATGGCAATAGAGCACTC
CTTTACGCCAGGCTGTTCCAAGTCCCGACTTCTAGCAACAATGCTCAAGC
GAAGATATCGCCATGCAATTGAACGGATAGGACGGGAGGTGTAAAAACAG
GCGATGTCATCTACCGCAAAGACACTGTCCACCCACGGAGATGGATTCTG
GGGTGGTGTCAAGACACTTGGCTCGGATATCGAAGCGCTTTCATCGCGTC
GGTAAAATTGACCCTTAAATGGGTGAGTCTGAAGGCTGAGGTCGACCATG
GGAGGCAAGAAGCGACATATCAGTCCCCCGCTTTCTTCATCGTAGAATAA
GCCTGCTCCATGCGGCGTGAGAAGCGCCACTGCCCCAGTATCCCCGTGCA
TTACCAAAGTCCATAAGCACCAAGCACGATCGCGGTCACCTGACAAGTAC
AAGTGGTTTTGGTCATCGACACATAAATATTGGTTTGAATTGACGTTCTT
CAGAAAAATATCGAAGCAGTCGTGACACCAAGGGTAAGCACAAGATGTGG
GGCCCGCAGACTCGTTCACGTGAGGGTTCCTGCTGAAGTCATTCTCATCA
AACATGACGTTTTCATGACCACTTGCATCTATCAATTCAACAGTCCATTG
TTCGTCCTCGTAAGGTCGAATGGCCGGGCAAGAGGCTGCGCGGGGCTTCT
TGCACACGTAGCAATTCGCGCGTTCTTCATCGTCACATGGCTTCGTCACC
CATGATCCATCTCGAGCCATTTTGGTGCATGCAAAGCTATCCAAGACCAT
CGACGGCTCACTCGTCACAGAAGGTTCAATCACCATCGATGGGTTGTCAA
CCGGTTCGTCGTGTTCGGGGACTAGCCTGGCATTCGGCAGTGACGAAGGA
TGACGCCAGTTTTCATAGTAAGACCAATCGTATTCTTCCCCATTCAGCAT
GCTATTCAATCCTATGTACCCCGGAAGGAAGCCATAATTGAATGTCATGC
TGTCTTGAATTTGCGCGAGCACCCAatcgttctcctcctttgaaTCAATG
ACTACCAAACGGCCGCCCCAAGAGCCGCACATTTCTTGCGCCCCCGCCCA
TGACACGTTGTACACAACTTGCCTTTTGTAGCAAGAACAACCGAAGTGTA
GGCTGAAAGTATTATCGTCGGATATATCATGATATGGGCCGGGCCCTTCC
TCGTGACTTCTTGTCGGTGAAGGACAAGAACACGATGTATCATTTGCTCC
AACCTCACAGAGCACGACGCGCGTTTTGGCCGTAAAACAAGATGGCAGCA
CCAAATCCCAGGTACCATCTTCCGCCATCTCAAAGCATTGTTGCTTTGGA
ATATTACTTTGATCTGAAATCAAAGTCGACGTCATGCTCGTACTAATTGA
TCTTGTAGACCACTTTCCAGGAGTATCAGCGAGACTATTCATACCAGCTA
CGTTCCAATATGCATCCCAAGCCCAGGATTCTGATTCATCTCCATTACTT
CCCACCAAGGCAGTCCTATTGCCTTGCGTTATAAGGGGGCGAGACGATTT
TCGCCGGTGACATCCAATGTATCCACCCCTTCGGCCAAATAAGGCATGGA
CAAATGTGTTCTCTGCCATGGACTTTATCGAACCCAAATGTCCGCCTAGA
GCCTGACAGTGCGCTCGGGCATCCCACCAAGAGGCATTGCGGCTGCGGTG
ACGAAGGTAGCATGAGTTTTCAAAGGGTGTCCATCCCCTAGGGCAGCCCC
GCTTCGACAGCCAGCCTTTTTTTTTGCAAGCAAAGAATATGACTTCTTTT
GGCGCTTGATAGCAGTCAACGGCGAGCCAATCACCGGACTCATCCATCCA
TCCACAATCCTTAAGAATTCGTTGATACATTCCTAGACTTTGAATATACC
CGGTTGCTTTAGCGATACTCCCAAAGAAACCCACGACAGGGTGGTGCCAG
CGTGATGCTGGGATCCATAACTCTTCTGTCAGAAAACC

Coding sequence (CDS) from alignment at CM002457.1:1006668..1011105+

>rna1591 ID=rna1591|Name=rna1591|organism=Nannochloropsis gaditana|type=CDS|length=1347bp|location=Sequence derived from alignment at CM002457.1:1006668..1011105+ (Nannochloropsis gaditana)
ATGATGCAGCTTTTTTTGCTCGCTATTTCCATACTCGGCCTcgcctcatc
gtcctcctctcctaaAAAAGAAGTACTCGTCTTGGGAGGCAACGGCTTTA
TGGGCGTGTACACAGTCATCGCTTTAGCTTTTTCTGATAGATATGCGGTT
ACCATTGCCAATCGCAATACTACCTACTTTGACTCTTTAGAGCGGTTGGC
CAGCGCAAATATAACCTCCCTGCATTGGGATCGGAGAAGCGAACCGATCG
AAGACGCATCGGAAGTTGTAGCTTTCTTTGAAGATCACCCTCATATTCAT
GCCATTGTTGATTTCTCGTGTTATTCAGGAGATTCAGCGCGAAACGTGGC
TACTTTTTTGATAAAAGAGGAAGTACGTGTGGGGTTGTACGTTTACGTGT
CCAGTGATTCTATATATGAGGTTTGCTCAGCCAAGCGTGACCTTGAAAAA
CCTACCACGGAAGACGTTGACGATCATCGTCCGTCCGGGCCTCGTTCTCA
AGCGGAATGTAATGCTGCTGACACCTACGGCCACGGCAAGCTCGAGGCTG
AGGAGGTTCTTCGAGAGCTCCAGCCCGTCTCGACTTGGGACTACATATTC
TTACGCATTCCTGACGTTGTTGGTCCTCGAGACACGTCTAATCGGTGGTG
GTTTTATCAGATATTGATCGACCTCCAGATCTGGATCCATGTGCCCATCC
CATACGTTCGCGAGGATCGAGACGGACGTGAAATGAGCTTGGTGTACGTC
AAGGACGTGGCGCGGGCGATCGTCTCACTGATTTCAGGTCATGACGGCGC
ATTTCTCCACAGGTGGGGCGCAAATGTGAGTGATCGGGCGCTTACAGTCA
GGAATGTAGCCATCAACGTGGCCGATCACAGGGCGCGGACCTTTGTCCAG
ATCATGGAGGACATCGCCAAAGCCCTGGCCACGTCTCGGTCTTCCCAGTG
GCccacctcatcctcttcgacaATGCCCTCTCCATTGGTGTTTGCGCTAA
ATTCCACCACTGACTTTCCAAGCGTGAAGAGAGGGCCTATCTCCACCACG
CGGGCACGCACCCTCTTGGGATGGGAGCCAACGCCCTGGGACGAGGTCGT
GCTCGAGACCGTCGAGTTTTTCCAGTCAAGAATCCTCTGGAAGGACGCTC
GGTACGCCAAGGAGCTGCAAGGAGTCTTGCAAATGGTGTGTCAGCAAGTA
GCAAAGTACATTGACGAGAGGACTTTCCGCGACTTGTTACTGAAAGTGTA
CGGGCTGAATGCTTCGGAAATGACTCTGACGTGCGCAGGCTGCGCCAGTG
ACGTCATCGTGGACGAAGAACCGTGGAGTTCGCAGATAGAGTTATGA

Synonyms

Publications