rna1590, rna1590 (mRNA) Nannochloropsis gaditana

Overview
Namerna1590
Unique Namerna1590
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length261
Alignment locationCM002457.1:1006252..1006750 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100024g46.4337.mrna
Orig protein idgnl|cribi|Naga_100024g46.4337
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1006252..1006750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100024g46gene1529Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1590rna1590-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29079.1cds1586Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1590 ID=rna1590|Name=rna1590|organism=Nannochloropsis gaditana|type=mRNA|length=261bp
ATGTCTTATAAATCATATGAAAAGGTGGTAGTCATACTTCTTGACACTTG
GAACGTATGTGATTTGTATTGGTCGGACGCTGGTTATATAGTGTCGCGTC
GTGCATTGAAAATAGATCAAAGACTCATGCGATGGGTTTTGCCGACCATA
AGCAGACTTGTAAAGGCGGAAAGAGCGTTTGGTTCCATCATATTAGACAG
ACTTAATATGGAGTGGGAGGTGGCACAGAAAGGCAGAAAGACGGAGGATA
AAGAGAAATAG
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protein sequence of rna1590

>rna1590-protein ID=rna1590-protein|Name=rna1590|organism=Nannochloropsis gaditana|type=polypeptide|length=77bp
MGLGVLLVYVIVDRFCQYPGSKVVYNLYAIHVVNSVLVSKFDADRRSNST
KTPLLLRQVKNPNVLTVERSIKAVSNL
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mRNA from alignment at CM002457.1:1006252..1006750-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1590 ID=rna1590|Name=rna1590|organism=Nannochloropsis gaditana|type=mRNA|length=499bp|location=Sequence derived from alignment at CM002457.1:1006252..1006750- (Nannochloropsis gaditana)
ATGGGCGTAATGTTGTGATTAGATAGAGTTCATCAAGAAATAGCCACGAG
ACTACCAGGACGTTGCGGGCAGCTTCGCCGTGAGCGAGGGCGACTTCAGG
TGGTAGGTAGCTCGGAGTCCTGCTCGTGTACGTGATAGTCGACCGATTCT
GCCAATATCCTGGATCAAAAGTGGTCTACAATTTATACGCGATACACGTT
GTCAACTCTGTGCTCGTGTCAAAATTCGACGCAGATAGGAGAAGCAATAG
TACCAAGGTGCAATGCATTTTGTGGTATATTTTTGCTCTCTGGCGATCCT
TCGAAAGGTGTATTGAACGCTAAAAGCCACTCGAAATATCTCTAGTCATC
CTGGTTTGTGTTTTCTGTTGCTCACTGGTTATATACTACTAAATATCATG
GATGGATCATCCAAATAGACGCCTTTATTGCTTCGTCAAGTTAAGAACCC
GAATGTGTTGACAGTCGAACGGAGCATCAAGGCAGTGTCAAATCTTTAA
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Coding sequence (CDS) from alignment at CM002457.1:1006252..1006750-

>rna1590 ID=rna1590|Name=rna1590|organism=Nannochloropsis gaditana|type=CDS|length=702bp|location=Sequence derived from alignment at CM002457.1:1006252..1006750- (Nannochloropsis gaditana)
ACGCCTTTATTGCTTCGTCAAGTTAAGAACCCGAATGTGTTGACAGTCGA
ACGGAGCATCAAGGCAGTGTCAAATCTTTAACTCGGAGTCCTGCTCGTGT
ACGTGATAGTCGACCGATTCTGCCAATATCCTGGATCAAAAGTGGTCTAC
AATTTATACGCGATACACGTTGTCAACTCTGTGCTCGTGTCAAAATTCGA
CGCAGATAGGAGAAGCAATAGTACCAAGATGGGCACGCCTTTATTGCTTC
GTCAAGTTAAGAACCCGAATGTGTTGACAGTCGAACGGAGCATCAAGGCA
GTGTCAAATCTTTAACTCGGAGTCCTGCTCGTGTACGTGATAGTCGACCG
ATTCTGCCAATATCCTGGATCAAAAGTGGTCTACAATTTATACGCGATAC
ACGTTGTCAACTCTGTGCTCGTGTCAAAATTCGACGCAGATAGGAGAAGC
AATAGTACCAAGATGGGCACGCCTTTATTGCTTCGTCAAGTTAAGAACCC
GAATGTGTTGACAGTCGAACGGAGCATCAAGGCAGTGTCAAATCTTTAAC
TCGGAGTCCTGCTCGTGTACGTGATAGTCGACCGATTCTGCCAATATCCT
GGATCAAAAGTGGTCTACAATTTATACGCGATACACGTTGTCAACTCTGT
GCTCGTGTCAAAATTCGACGCAGATAGGAGAAGCAATAGTACCAAGATGG
GC
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Synonyms
Publications