rna1589, rna1589 (mRNA) Nannochloropsis gaditana

Overview
Namerna1589
Unique Namerna1589
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1619
Alignment locationCM002457.1:1005839..1006216 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100024g47.4360.mrna
Orig protein idgnl|cribi|Naga_100024g47.4360
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1005839..1006216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100024g47gene1528Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1589rna1589-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29102.1cds1585Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1589 ID=rna1589|Name=rna1589|organism=Nannochloropsis gaditana|type=mRNA|length=1619bp
TAGCGAAGAGCAATCGGGTCCTTGTTGGTCTTATTCACTTCTTTGAGATA
TTTTTACTGATTGGATCCCTTCAGTGGCTTTTCCTGGCCGTATTAGAGGC
ATATTCAGATTTAGCGAAGCCGCATTTATGAAATATTCGACTATCCCCCA
CCCACCACATGCCCATTCCTTGTGCCCGTGAGCCACAGGGTCTATCAAGA
GTAACGGCGGTTAAAGCTTTCCTCGAGATGTTGAGATAGGTGACTTTTAA
TCCGATGAACTGCCTTTGGGACCTCTTGCAGTCGTGAATATGTGTTGAAC
GCTACACCAATAAATAAGCAAGCTGCAGGGGAGATAGGAATAAAAGCTGT
GATGCAGTCAAGAAAGATAGCATTGAAGGTCTTCGCTTCCATTTTCTTGG
TACTCTTCTGCATGAATGCCTTGGTCCTGGACATGCCTATTTCCATTTTT
AGCGAAACGACACAGCATACCCAGCTCCGAGCAACACCATGTCCTGCCTC
ATCATTACTTGAAGATATCCTTGTAGTCATATCATATCATTGGAACGTTG
GTAAACTCGTGTACCTCACTTCCATGCTCGATCTTATTCAGACCTACGAG
ACTAAAGTTGACGTCCTCATCGTTACAAATAATGATAAGGCTCTACATAA
GTTTCTAGCCGCAAGGGGATACATTGAAAAGAGCAATCCCACCATCCAAC
TATGGCAAGCTCCCACGTCCAACGACTCGAATAAATACTCATTACTTTGG
GTTCACAGGCAGGCGATTGAAAAGGCTGTGGAAAGGCATCCCAATTATAC
GTCGATATTCTACATGGAAGACGACACGCACTTGTCCTGGCCGACTGTAG
TTTCCTGGGCATTAGATACAGAAGTCCTTGAGCCGTTGAACTTCACGCGC
TGTAACTATCGAACAGAGGTGGATGCAGAGACGGGGGACTTCAACGTGTT
GGATTATCCATATTTTTTAAGCATCACCAGCGAAAGTGTGCTGGACGCAA
CTCGAAATACCGATTTCTTACGTCTACAGGAACGGCTCAGAAAACAACCC
GCGCTCGATTGTGGGAAGCATCACGACAAGACACGATGGTCTGTCGGCGT
CCATGATCGGTTCATCTCACCGACATATCCATATCAAGGCATGTGGATGG
CCACACGCGCCCAGCTTGCCCGCTTCATGGCACATCCTTACTGGAAGAAA
AAAATCGCTTCGACTGCCACATTGCCCGCAGGCATGGGGATGGGGTACCC
CGAGCGCACTACGGTGATGAACTTGCTGATCAACGTGCCTGAAGGCTTTC
GTTCCAACTGTATGGTGCCCTTTATCCTCAGCGATCAAGGTGATGGGATC
CTGAAGCCCACTCTGCCGTCGGTTGCCCGTGTTGAGCACATGCGAAATGG
ATATTCCTCCGAGCCGGGCCCACTCGGGAAAATCCATGTGCATCTAGCGA
TCACAGGAGATGTCCTTCTTCCTCGCGAGAGCGAGGAGATGAAAGCGCAG
GAGGCAGGAGGAAATGTGTCATGAGGGAAAGCGCACAAAGGTGGAATGGA
AATACTCCTCGAAAGGAATTGTATAAAATAAATGTCGAGGGAAACATCAT
TTGATTTGACCATGAACAC
back to top

protein sequence of rna1589

>rna1589-protein ID=rna1589-protein|Name=rna1589|organism=Nannochloropsis gaditana|type=polypeptide|length=86bp
MSYKSYEKVVVILLDTWNVCDLYWSDAGYIVSRRALKIDQRLMRWVLPTI
SRLVKAERAFGSIILDRLNMEWEVAQKGRKTEDKEK
back to top

mRNA from alignment at CM002457.1:1005839..1006216-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1589 ID=rna1589|Name=rna1589|organism=Nannochloropsis gaditana|type=mRNA|length=378bp|location=Sequence derived from alignment at CM002457.1:1005839..1006216- (Nannochloropsis gaditana)
ATGTCTTATAAATCATATGAAAAGGTGGTAGTCATACTTCTTGACACTTG
GAACGTATGTGATTTGTATTGGTCGGACGCTGGTTATATAGTGTCGCGTC
GTGCATTGTGAGGACAGCGTAGACTACCCCTGAAATTCAATGAAGATTTT
AATCTTTCGATAGTGGTCATAGTGTAAACATGTGACATTATCCCCATGAT
ATGGTTCTCTTGAACAACCCGGAGGAAAATAGATCAAAGACTCATGCGAT
GGGTTTTGCCGACCATAAGCAGACTTGTAAAGGCGGAAAGAGCGTTTGGT
TCCATCATATTAGACAGACTTAATATGGAGTGGGAGGTGGCACAGAAAGG
CAGAAAGACGGAGGATAAAGAGAAATAG
back to top

Coding sequence (CDS) from alignment at CM002457.1:1005839..1006216-

>rna1589 ID=rna1589|Name=rna1589|organism=Nannochloropsis gaditana|type=CDS|length=522bp|location=Sequence derived from alignment at CM002457.1:1005839..1006216- (Nannochloropsis gaditana)
GAAAATAGATCAAAGACTCATGCGATGGGTTTTGCCGACCATAAGCAGAC
TTGTAAAGGCGGAAAGAGCGTTTGGTTCCATCATATTAGACAGACTTAAT
ATGGAGTGGGAGGTGGCACAGAAAGGCAGAAAGACGGAGGATAAAGAGAA
ATAGATGTCTTATAAATCATATGAAAAGGTGGTAGTCATACTTCTTGACA
CTTGGAACGTATGTGATTTGTATTGGTCGGACGCTGGTTATATAGTGTCG
CGTCGTGCATTGAAAATAGATCAAAGACTCATGCGATGGGTTTTGCCGAC
CATAAGCAGACTTGTAAAGGCGGAAAGAGCGTTTGGTTCCATCATATTAG
ACAGACTTAATATGGAGTGGGAGGTGGCACAGAAAGGCAGAAAGACGGAG
GATAAAGAGAAATAGATGTCTTATAAATCATATGAAAAGGTGGTAGTCAT
ACTTCTTGACACTTGGAACGTATGTGATTTGTATTGGTCGGACGCTGGTT
ATATAGTGTCGCGTCGTGCATT
back to top
Synonyms
Publications