rna158, rna158 (mRNA) Nannochloropsis gaditana

Overview
Namerna158
Unique Namerna158
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length684
Alignment locationCM002455.1:409075..411064 +

Link to JBrowse

Properties
Property NameValue
Producttriacylglycerol lipase
Orig transcript idgnl|cribi|Naga_100013g62.9794.mrna
Orig protein idgnl|cribi|Naga_100013g62.9794
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:409075..411064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100013g62gene150Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna158rna158-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30506.1cds158Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna158 ID=rna158|Name=rna158|organism=Nannochloropsis gaditana|type=mRNA|length=684bp
ATGTTTATTGCACAGGTGTCCCGTGAAGGCCATTGTAAATCTTGTCCCTC
ACCTTCATCCCTTCCTGTCGTTATCCCCCTGCTTCCTCAGAGAACCGCTT
TTGCTTCGTCGTTCTTGCCTTGTCTCCTTTTCAACATGAAGGTTGCTGCA
TCCTGCCAACTATTGGTTGCTCTTTGGGTCTTCTTGTTTATGAGCAGCGG
CAACGCATTTGTCTTTCGCCCTCAGCCACTGACCCGCAGTTCTCGGACTG
TTCTTCGCGAAGGCTTCGACTTCATGGAAATGGGGTCTCGATTTTTGAAC
GAGCTATTGCCTTGGGGTGATGCGAAGAAAGGAATGTGGGCGGGAAAGCG
GGATGCGATGGTAGTAAAGTATATGGAAAAGACAGGTATTTCGAAAGAGC
AGGCTGAGCGGGAGGTAGACGAATACTTGAAAGACAAGGACGCCTATATC
GCCAAAGCGCCCAACTCTCTGGTTGCTCCGAGGGAGGGCAAGCACCCTGG
TGAAGGAAATAAACCACGGACCGGCGTTGACGCCAGAGAGCGCGCTGTGT
CATACAATCTGGCGTTCAGACGGAGCGCCCCGGCAGCCTGCATTAATCCT
GTGTCGCTGAAAACTGACAGTTCTAAGGATTTTATTCTTATTGCTCATTT
TGACGGGCTGAAAACTGGGAGGAGATGTCTTTAA
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protein sequence of rna158

>rna158-protein ID=rna158-protein|Name=rna158|organism=Nannochloropsis gaditana|type=polypeptide|length=487bp
MSLAFDRGLTPVEGLMDAHDLLGRRRELEEQERIRGYSIPRSSSSGAKTF
RASCRLSSSDTDYDHGGRGNRRRRMGGEGGVKIVKLHKPVFRGLSIGSML
HQQHQTFFSWRRNSRKSSGFDEQGRQERGSRLSLSRNGLPVADADREEEE
LVGKAGTVRVHATVKRFAEDMLSEGLLDDVLQCLEAAPDCRLVITGYSLG
GMLSQLFCLYLGEALVQRGMSTQQVLMMGFGSPRVGDDGFKARLGLLYPQ
QSALMNAVYPLDTLHAFPPASEGYADAVVKVFLRQPGQFVGRRTPSRSTP
FATPLSWLRVFDTKVDEIASKHRQEVRARGATGETLVGSRGSEDECVLCA
SNAHTTLRHRCRICTERGSHRSADCPNRGKGCKLCGLPDHPTGQHLCSVC
KLPGHRGRYCHELQSVGWAELAAFALFHDASYYSLATAAEDPVSLRRMAP
LPTTPPRPPRSYAGATKALGVTFREDDLKQLETTKDA
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mRNA from alignment at CM002455.1:409075..411064+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna158 ID=rna158|Name=rna158|organism=Nannochloropsis gaditana|type=mRNA|length=1990bp|location=Sequence derived from alignment at CM002455.1:409075..411064+ (Nannochloropsis gaditana)
TTTTCATGGCAAATTCTCTCTTGAGCGCACAATATCGAGTCGCCCTCATA
GCATTCCCCGCGCATCCCTTCCGCACCACCGACACCAGGCAACCCGGAGA
CAATTCTCAACCTTTGGGGCGACACCTACAAGGGATGGCTTGAGGATGAA
GTCAAACGCATCGTCACTGCCGCGAAACACATCCCCCTGAGCACGTACCT
GAAGATACTGGCTGCACCTGTGACCGCGGACTTTACGGACCTCGCTGACC
TGCTCTATCGCCTCCGGGAGTCCATCGCCCAAGCCTGGGAGAAACGAGAA
CGGACTCAATTCATTCAGAGCTACAACAATCTGATGAGTCTGGCCTTTGA
TCGGGGCCTGACGCCCGTGGAAGGGCTCATGGATGCACATGACCTGTTGG
GTCGCCGGCGGGaattggaggagcaggagcgcaTCAGAGGTTACTCTATC
CCaaggtcctcctcttctgggGCAAAGACGTTCCGTGCATCATGCCGCCT
TTCTAGTTCCGACACAGACTATgaccacggaggaagaggaaacaggCGGA
GAcgcatgggaggggagggaggggtcaagATAGTGAAACTTCACAAACCC
GTCTTCCGCGGTCTCTCGATTGGGAGCATGCTCCACCAGCAACATCAAAC
GTTCTTTTCTTGGAGAAGAAACAGCAGAAAGAGTTCGGGGTTTGACGAGC
AAGGCAGGCAAGAACGCGGGAGCAGGCTGAGCCTGTCGAGAAATGGGCTA
CCCGTTGCGgacgcggacagggaggaggaggagctggttgGGAAAGCAGG
GACCGTGCGGGTGCACGCCACAGTAAAACGCTTCGCGGAAGACATGCTCT
CGGAGGGCTTGCTGGATGATGTGTTGCAGTGTTTGGAAGCTGCCCCCGAT
TGCCGGCTGGTAATCACGGGCTACTCCCTGGGCGGGATGCTCTCTCAGCT
TTTCTGCCTCTACCTAGGGGAGGCCCTGGTCCAACGGGGGATGTCCACCC
AACAGGTGCTAATGATGGGCTTCGGAAGCCCCCGGGTCGGCGACGATGGT
TTCAAAGCGCGTCTTGGTCTTCTCTACCCCCAGCAGAGCGCATTGATGAA
CGCGGTCTATCCGCTCGATACCTTGcacgcctttcccccggcctcggagg
gCTATGCCGACGCGGTGGTGAAAGTCTTCCTGCGACAGCCAGGCCAATTC
GTGGGTCGGCGGAcgccctcccgctccacccCTTTCGCCACACCGTTGTC
CTGGCTGCGGGTCTTCGACACCAAGGTCGACGAGATTGCCTCCAAGCACC
GTCAAGAGGTTAGGGCGAGAGGGGCAACGGGGGAGACCCTGGTCGGGTCc
cgaggaagcgaggacgaaTGCGTCTTGTGCGCTTCGAACGCACATACtac
cctccgccaccgctgTCGAATCTGTACGGAACGAGGATCCCATCGCTCTG
CCGATTGCCCCAACCGGGGCAAAGGTTGCAAGCTTTGCGGCCTGCCTGAC
CACCCGACCGGACAACATTTGTGCAGTGTCTGCAAACTTCCCGGTCACCG
GGGCCGTTATTGCCATGAATTACAAAGCGTCGGATGGGCCGAGTTGGCGG
CTTTTGCTCTCTTCCACGATGCTTCCTACTACTCCCTGGCTACCGCTGCC
GAAGATCCTGTCAGCTTGCGGCGCATGGCTCCCCTTCCGACCACTCCGCC
TCGGCCCCCACGCTCCTATGCTGGTGCCACCAAAGCCCTCGGTGTCACTT
TCCGCGAAGATGATTTGAAGCAGCTCGAAACCACCAAAGACGCATGACAC
CCAAGGTAGGCTGCGGCACATCTTGGAGGGCCGCATCGCAACACGTCTCC
GATAACCTCCCTTCCATAGTTTTTACGTAAAGTGTAAGTTCTGGACCGCC
CATTGAGAACATGGGTTATGAgtagagaaagaagaggatgtGTACATTCC
AATTTTAACAAAGAAAGTTATGTCGGATTGAGAGCTTTTA
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Coding sequence (CDS) from alignment at CM002455.1:409075..411064+

>rna158 ID=rna158|Name=rna158|organism=Nannochloropsis gaditana|type=CDS|length=1464bp|location=Sequence derived from alignment at CM002455.1:409075..411064+ (Nannochloropsis gaditana)
ATGAGTCTGGCCTTTGATCGGGGCCTGACGCCCGTGGAAGGGCTCATGGA
TGCACATGACCTGTTGGGTCGCCGGCGGGaattggaggagcaggagcgca
TCAGAGGTTACTCTATCCCaaggtcctcctcttctgggGCAAAGACGTTC
CGTGCATCATGCCGCCTTTCTAGTTCCGACACAGACTATgaccacggagg
aagaggaaacaggCGGAGAcgcatgggaggggagggaggggtcaagATAG
TGAAACTTCACAAACCCGTCTTCCGCGGTCTCTCGATTGGGAGCATGCTC
CACCAGCAACATCAAACGTTCTTTTCTTGGAGAAGAAACAGCAGAAAGAG
TTCGGGGTTTGACGAGCAAGGCAGGCAAGAACGCGGGAGCAGGCTGAGCC
TGTCGAGAAATGGGCTACCCGTTGCGgacgcggacagggaggaggaggag
ctggttgGGAAAGCAGGGACCGTGCGGGTGCACGCCACAGTAAAACGCTT
CGCGGAAGACATGCTCTCGGAGGGCTTGCTGGATGATGTGTTGCAGTGTT
TGGAAGCTGCCCCCGATTGCCGGCTGGTAATCACGGGCTACTCCCTGGGC
GGGATGCTCTCTCAGCTTTTCTGCCTCTACCTAGGGGAGGCCCTGGTCCA
ACGGGGGATGTCCACCCAACAGGTGCTAATGATGGGCTTCGGAAGCCCCC
GGGTCGGCGACGATGGTTTCAAAGCGCGTCTTGGTCTTCTCTACCCCCAG
CAGAGCGCATTGATGAACGCGGTCTATCCGCTCGATACCTTGcacgcctt
tcccccggcctcggagggCTATGCCGACGCGGTGGTGAAAGTCTTCCTGC
GACAGCCAGGCCAATTCGTGGGTCGGCGGAcgccctcccgctccacccCT
TTCGCCACACCGTTGTCCTGGCTGCGGGTCTTCGACACCAAGGTCGACGA
GATTGCCTCCAAGCACCGTCAAGAGGTTAGGGCGAGAGGGGCAACGGGGG
AGACCCTGGTCGGGTCccgaggaagcgaggacgaaTGCGTCTTGTGCGCT
TCGAACGCACATACtaccctccgccaccgctgTCGAATCTGTACGGAACG
AGGATCCCATCGCTCTGCCGATTGCCCCAACCGGGGCAAAGGTTGCAAGC
TTTGCGGCCTGCCTGACCACCCGACCGGACAACATTTGTGCAGTGTCTGC
AAACTTCCCGGTCACCGGGGCCGTTATTGCCATGAATTACAAAGCGTCGG
ATGGGCCGAGTTGGCGGCTTTTGCTCTCTTCCACGATGCTTCCTACTACT
CCCTGGCTACCGCTGCCGAAGATCCTGTCAGCTTGCGGCGCATGGCTCCC
CTTCCGACCACTCCGCCTCGGCCCCCACGCTCCTATGCTGGTGCCACCAA
AGCCCTCGGTGTCACTTTCCGCGAAGATGATTTGAAGCAGCTCGAAACCA
CCAAAGACGCATGA
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Synonyms
Publications