rna1579, rna1579 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1579
Unique Name	rna1579
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2409
Alignment location	CM002457.1:981087..983914 +

Link to JBrowse

Properties


Property Name	Value
Product	peptide-n4-(n-acetyl-beta-glucosaminyl)asparagine amidase a
Orig transcript id	gnl\|cribi\|Naga_100024g58.4329.mrna
Orig protein id	gnl\|cribi\|Naga_100024g58.4329
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:981087..983914 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100024g58	gene1518	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1579	rna1579-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29071.1	cds1575	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:981087..983914+
coding sequence from alignment at CM002457.1:981087..983914+

mRNA sequence

>rna1579 ID=rna1579|Name=rna1579|organism=Nannochloropsis gaditana|type=mRNA|length=2409bp
GGGCGGCATTCACGGGCATGATTTTGACATAAATCGAACGAAGAAGGAGC
TTCTCCACTTTCCTTTGTCGTTTAAACGTCCCGCCCAACGGTCGCTCCCC
ATATCATCGCTGTGGCCCCAGGAATTCTCGGAATCCACCAATAATAGCGC
GCACTGTGCGTTGAAATTATTGAAAACCTAGCAGACTATTGCAAGTTGAA
TTATGCTACGACATCAGTGAGATTTAAGCAGCAACGATAAAGGGCACAAG
CAAATAGGCCTGCGGGGAAGCCTTCGCATTCGAGTCTCACCTTACGATTA
TAGTACCGGGAACTCGACAGGCTAGCTATTTGGACCCCTTTCAAGTCTCA
AATTCTAGTACATCTATAGGGTACTTATAGATATGCGCATTCGGGCTGTT
TTCGTGCAGTATCTTTCAAGATTTGAAGAGATAATGGAAAGCAAACGAAG
CACTTAGGACGAGCATCGATGCCGAAGCTTACCGAGATGTGCCCTGATTT
CAAAGGAGATGGCGTAGTACTGGACCATGAAGGGAGTAATGAGAAAGACT
TTACAACTAGGTCGCGTCCTTTGGGTGGGTTTGAACAGTTTATGTATAAT
GCTCATCGTTTGGGATGTGGCTTAATCTACATGATTGCTGACCTTCGAGA
AGGAAGCCCGTTTCTCAAGGACACCAGTCTAATGGAAGAGGCATTGCGAG
CAACGGTATCTCATCATCCTAATTTGCATGCATCTATTTCGTCGGATGGA
AAGCAACTGATGTTCCAGCCCGTCAACAAACTTCCGCCTTCTTTTTTTTC
CGTACCTCTTATCTCTGGCTCGTCGGCTGTGGATGTAATACAAGAGGAGC
TGTTGACCACTCCTATCGCCCGAGGTGAACGTCACAGTCCTTTTTGGCAA
TTAGTGCTCGTACAAAATGCGAAAGATGGGAAAGAAAGTCAGTCGTTGGT
AGCGCTAGCGCACCACAGTATTATGGATGGGGAGTCCATGGTGCTCTTCT
TGAACGAGATTATTGTGCGAACAAATGAGCTGCTGCGAACGAGATCAGGC
GTGACTACTCATGTTGCAGACGAAGCAAAGTCGCCACTGGAATTGTCAAA
GTTGAGTTTTCTCCCATCGCAGGACGAGCTCTTTGATAAAGTCTTGCCAC
CAACAGCAGGGGACGGTGCGCGTGGTGCACTTTCCTACCTGTGGCGACGG
ATAACCTGGTTCTTGAGACGGCCTACCGTTCCAGCCTCTGAAGGCACCAC
CCGCGATATTTCCCACCGAAGGAATAATATCCTCTCTGCACAAATTAAAG
GCTCTGCACTCACCCTACTACTTCGCCGCTGTCACGCCGAGCATACAACC
GTCACAGCGGCCCTGGCAGCCGCCACCCTTCTAGAGCTGAAACGTCTGAT
TCCCGAATCACCCAGGGTGAATCTCAAATTGGAAACGATGGTGAACCTTC
GTAGGGCCCTTTGCCAGGTTGACCAGGCACGGTACAAAGACGCCCTGCAA
TGTTTCGCCGCACCCATAGATACGGTCGTCACCGTCCAGGAAAATGATGA
CTTATGGGCACACGCACGCGCTTACAAGGAGCGTTTGAATGAATCCATGG
CTGCGGGGCAGTGGAAAAGACAGGTCGCCGCTTTTCGGACATTTGAGTAT
GGCGTCTATGGTGCCCTGGCTCGCATGGCCGTGACGCCTGAGATTCAGGG
CCGCGTAAAGGCCGCTGCCATCTCCAATTTAGGGGTCCTCTCCTTTGATT
CTGTGGAAGACGGCAAAGGCAAGATCGGTGCCGAGGAAGAAGACCCCCGA
CAAAATGTTGAAGGGCTAAGGATTGCCAGGTTACAGTGGGGCATTTCTTT
GCACGGCATAGGTCAGTACGCCTTTGTGGCGGCCTCCACGCAGGATAGTA
GCCTAAACCTGACCCTGACGTGCGCCAGTCCCATTGTCTCTGCGGGTCGT
GCAAAACGTCTTCTTGATGGCATAGTTGCCCATCTGACGCAATTGTAAGT
GACACATGGGCGGTATAGCATTGTAAGCATGAGCACAGAGCAAGCACGAG
GACAGGACAGGATGTGAAAGGGGGGGAACACAGCATTTGATCCATTCGGC
TCCTTCTGGTTTTGAAGTGAGATCTACAAGGTTGTCGGGTTCTATTTTGG
TCATGAACACACCATTTCTACCTTGGCTATTGCAAGACATCTGAAATTGC
GATCGGCCCTCGAGCTTCGACATGCTGCTTTCTCAACGTAAAGGATAACT
GATGTTCGTACGCACGTAAAATTGTATATATACCAAGGGATGTCATCCGC
AACTCTGCGAAATGTTTCCAGGAAAGTCTGACGAATTTTAAATGAGTTGC
TAGAACTCATTGCATTTTCTTTCGACAAATATAACTGCTCTATCATGGAT
CCTATCCCC

protein sequence of rna1579

>rna1579-protein ID=rna1579-protein|Name=rna1579|organism=Nannochloropsis gaditana|type=polypeptide|length=766bp
MKTSILLVLWLWSAARVIYAYPAYDDPVTASPPLIRRGEFLCTVDLVRNA
TCDAYDKVTTQPFLLHANPACRGRVSMAVLDFYGAVKGIQFDRSGGIFLG
EVELLRTTTPEPSPQGITWHVEKDVSDYLSYILDEKPKSGALGIANIVDK
TYTGVIYVNATLSFYGRPFLALSNLVEGIRPSTTPAFQASSVLPSFLRGR
AVDSLNPSKIEKELYRSQNESAGLLVEKGAYPPLVLPAIFPVVNASTGRW
SGITSLSGDDEISFPLPPWPQPNIARVYLDVVASPHGCEEFFYTNTPSDA
QEPDGTSCGGGVYREIQVWVDGQLAGVIYPAVVLYTGGVNPFLWRPLTGI
ESFDIPAYRFDLTPFAGIFNSAMSSNAVGLTSVALQDVKNDTGLYERAPS
TIMGTSTARPNISVRVNGNNKKGIWSVTSALLLYPDWTIEASTPLFGRIN
SLTDSGPQVSVAKTRDIEGVEEGSNSTTYKTVGYHKFSVSGTLSYPDSSQ
TITTTVSAYLSAWNENSLVGNHTQRTRGAMADHTTVERHESKGTFREQHR
LQNRYPYFIQSFFATDNSSLELRATVDIGLERSFDDESDARRPFSSSWTN
RIKSRAVYNRSLDHYQTYTTLGESIETFQIFNSWQGPAPCYDRVLAARKG
NIYLNRSTYTCIFPPGLSFCGDRICNQLGVPLDDSEPDRLKASKVTIGPK
PTFKIAEDQERMNKEAGTLIDDSPSTLMPQLSIEAKTVLEDTSDPQKLTL
AALHDRVRLAKQGVKK

mRNA from alignment at CM002457.1:981087..983914+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1579 ID=rna1579|Name=rna1579|organism=Nannochloropsis gaditana|type=mRNA|length=2828bp|location=Sequence derived from alignment at CM002457.1:981087..983914+ (Nannochloropsis gaditana)
GCGACAGGATCAAAACACCATTTCATCATCAAATCAAGGGTGAAAGTTCG
CATTATTTTTATCGTGTACGCGGCTTGGGCAGATCTGGTGGTGGTTAGCC
CGCAGGGCTGAGCGGTCTGGCCCATCGTAAgtcacctcccgcccgtccac
GGGATTGGACCGCCGTGTTGAGAAGATTTCACTAGCATGTTGTTCAAGCC
CCAAAAACTGTTTGAAAGGGGCCATCACTCTTCTCACTTCCATGAATCAT
CATATCCGATCGTGTCACAGGTTTTTGTGGGCGTCTCCAAGCACCGAGTA
TGAAAACTTCAATTCTCCTCGTCTTATGGCTTTGGAGCGCTGCCCGCGTC
ATCTATGCCTATCCTGCCTATGATGATCCTGTAACagcttcacctcctct
cATACGTCGAGGAGAATTTTTGTGCACCGTGGACCTTGTCAGAAATGCCA
CATGTGACGCCTATGACAAGGTCACAACACAACCTTTTCTTCTACACGCC
AATCCTGCATGCCGCGGGCGAGTCTCTATGGCTGTACTAGATTTTTACGG
GGCTGTAAAAGGGATTCAATTCGACCGGAGTGGGGGAATATTCTTGGGGG
AGGTCGAGCTTCTACGTACTACCACTCCTGAGCCTTCCCCGCAAGGTATT
ACTTGGCACGTGGAGAAGGATGTAAGTGATTACCTCTCCTACATTTTGGA
CGAGAAGCCAAAGAGCGGGGCTTTGGGCATCGCCAACATTGTCGACAAAA
CGTATACGGGCGTCATCTACGTCAACGCAACCCTCAGCTTTTACGGacgc
cccttccttgccctctcaAACCTCGTCGAAGGAATTCGTCCTAGTACAAC
CCCGGCATTTCAAGCTAGCTCCGtgctcccttcttttctgcgCGGTCGTG
CTGTTGACAGTCTAAATCCTAGCAAAATTGAAAAAGAGCTATATCGCTCC
CAGAACGAAAGCGCGGGCCTGCTGGTCGAAAAGGGGGCGTAcccccctct
tgtcctccctgccatTTTTCCGGTCGTCAATGCATCCACTGGGCGATGGT
CAGGCATAACCAGTCTCAGTGGAGACGATGAGATAagtttcccccttcca
ccctggCCCCAACCCAATATTGCTCGGGTGTACTTGGATGTCGTGGCCTC
CCCCCACGGCTGTGAAGAGTTTTTCTATACGAACACTCCCTCAGACGCCC
AGGAGCCTGATGGCACCTCCTGTGGCGGGGGCGTTTACCGAGAGATTCAG
GTGTGGGTAGACGGACAGCTTGCTGGGGTTATATACCCCGCTGTGGTCCT
GTACACTGGAGGAGTGAACCCTTTCCTGTGGCGGCCACTTACTGGGATCG
AAAGCTTTGATATCCCCGCTTATCGATTCGACTTGACGCCTTTTGCCGGC
ATTTTCAATTCAGCCATGTCCTCAAATGCTGTGGGATTGACTTCAGTTGC
CTTACAAGACGTCAAGAACGACACAGGGCTGTACGAGAGAGCCCCATCGA
CCATCATGGGGACATCGACGGCGCGTCCCAACATTTCCGTGCGCGTGAAC
GGGAACAATAAGAAGGGCATTTGGTCAGTCACCagcgcccttctccttta
tCCAGACTGGACCATCGAAGCCTCGACGCCGCTCTTTGGGAGAATTAATT
CTCTGACAGATTCGGGACCGCAGGTGTCGGTTGCGAAAACTCGGGATATA
GAGGGGGTTGAGGAaggcagcaacagcaccacCTACAAGACAGTCGGCTA
TCATAAGTTCTCCGTATCCGGGACCTTGTCCTATCCAGATTCATCCCAGA
CTATTACCACCACTGTCTCTGCCTACCTGTCGGCCTGGAACGAAAACAGT
CTCGTTGGCAATCACACCCAGCGGACTCGGGGGGCCATGGCGGACCATAC
GACTGTGGAGCGGCATGAAAGCAAAGGTACCTTTCGGGAGCAACACCGGC
TGCAAAATCGGTACCCTTATTTCATCCAGAGCTTTTTTGCGACCGATAAT
AGCTCTTTAGAACTACGGGCGACCGTAGATATAGGTTTGGAGCGCTCCTT
TGACGACGAAAGTGATGCTCGAcgccccttctcctcctcgtggaCGAACC
GCATCAAGAGCAGAGCCGTTTACAACCGATCATTGGACCATTACCAGACA
TATACAACGTTGGGAGAGAGCATAGAGACTTTCCAAATATTCAATTCTTG
GCAGGGGCCCGCGCCCTGCTACGATAGGGTCCTCGCTGCGCGAAAGGGCA
ACATTTATTTGAACCGTTCTACCTATACATGCATTTTCCCGCCCGGTTTG
TCTTTCTGTGGGGATCGGATTTGTAATCAGCTTGGAGTGCCTCTTGATGA
CTCCGAGCCCGACAGATTGAAAGCATCAAAGGTTACTATAGGCCCAAAAC
CTACTTTTAAAATCGCGGAGGATCAGGAGAGAATGAATAAGGAAGCTGGA
ACATTGATCGATGATAGTCCATCTACACTTATGCCGCAACTTTCGATTGA
AGCCAAAACTGTGCTGGAAGATACAAGTGATCCCCAAAAATTGACTTTGG
CAGCACTGCATGACCGTGTTAGGCTCGCTAAGCAAGGAGTGAAAAAGTAA
GATCCACAGAGCAGTCATAAGAGGGCATATGTGATAACATATGCGCATGA
AGAGCCCTGGGGGGCTTATCAATGGTCATGCATCAAAGACTTCCGTACGT
GTAGTATGACGCGGAAACTAAAAATTGTGTAATATGTCATGCTGAATCGC
TCCAGTCGTGGGCCCTCAAAAGCATTCCATTCATTTGAGCACGTTAGCCA
AAAGTCACAAATCAAGGCACGTTAAAGA

Coding sequence (CDS) from alignment at CM002457.1:981087..983914+

>rna1579 ID=rna1579|Name=rna1579|organism=Nannochloropsis gaditana|type=CDS|length=2301bp|location=Sequence derived from alignment at CM002457.1:981087..983914+ (Nannochloropsis gaditana)
ATGAAAACTTCAATTCTCCTCGTCTTATGGCTTTGGAGCGCTGCCCGCGT
CATCTATGCCTATCCTGCCTATGATGATCCTGTAACagcttcacctcctc
tcATACGTCGAGGAGAATTTTTGTGCACCGTGGACCTTGTCAGAAATGCC
ACATGTGACGCCTATGACAAGGTCACAACACAACCTTTTCTTCTACACGC
CAATCCTGCATGCCGCGGGCGAGTCTCTATGGCTGTACTAGATTTTTACG
GGGCTGTAAAAGGGATTCAATTCGACCGGAGTGGGGGAATATTCTTGGGG
GAGGTCGAGCTTCTACGTACTACCACTCCTGAGCCTTCCCCGCAAGGTAT
TACTTGGCACGTGGAGAAGGATGTAAGTGATTACCTCTCCTACATTTTGG
ACGAGAAGCCAAAGAGCGGGGCTTTGGGCATCGCCAACATTGTCGACAAA
ACGTATACGGGCGTCATCTACGTCAACGCAACCCTCAGCTTTTACGGacg
ccccttccttgccctctcaAACCTCGTCGAAGGAATTCGTCCTAGTACAA
CCCCGGCATTTCAAGCTAGCTCCGtgctcccttcttttctgcgCGGTCGT
GCTGTTGACAGTCTAAATCCTAGCAAAATTGAAAAAGAGCTATATCGCTC
CCAGAACGAAAGCGCGGGCCTGCTGGTCGAAAAGGGGGCGTAcccccctc
ttgtcctccctgccatTTTTCCGGTCGTCAATGCATCCACTGGGCGATGG
TCAGGCATAACCAGTCTCAGTGGAGACGATGAGATAagtttcccccttcc
accctggCCCCAACCCAATATTGCTCGGGTGTACTTGGATGTCGTGGCCT
CCCCCCACGGCTGTGAAGAGTTTTTCTATACGAACACTCCCTCAGACGCC
CAGGAGCCTGATGGCACCTCCTGTGGCGGGGGCGTTTACCGAGAGATTCA
GGTGTGGGTAGACGGACAGCTTGCTGGGGTTATATACCCCGCTGTGGTCC
TGTACACTGGAGGAGTGAACCCTTTCCTGTGGCGGCCACTTACTGGGATC
GAAAGCTTTGATATCCCCGCTTATCGATTCGACTTGACGCCTTTTGCCGG
CATTTTCAATTCAGCCATGTCCTCAAATGCTGTGGGATTGACTTCAGTTG
CCTTACAAGACGTCAAGAACGACACAGGGCTGTACGAGAGAGCCCCATCG
ACCATCATGGGGACATCGACGGCGCGTCCCAACATTTCCGTGCGCGTGAA
CGGGAACAATAAGAAGGGCATTTGGTCAGTCACCagcgcccttctccttt
atCCAGACTGGACCATCGAAGCCTCGACGCCGCTCTTTGGGAGAATTAAT
TCTCTGACAGATTCGGGACCGCAGGTGTCGGTTGCGAAAACTCGGGATAT
AGAGGGGGTTGAGGAaggcagcaacagcaccacCTACAAGACAGTCGGCT
ATCATAAGTTCTCCGTATCCGGGACCTTGTCCTATCCAGATTCATCCCAG
ACTATTACCACCACTGTCTCTGCCTACCTGTCGGCCTGGAACGAAAACAG
TCTCGTTGGCAATCACACCCAGCGGACTCGGGGGGCCATGGCGGACCATA
CGACTGTGGAGCGGCATGAAAGCAAAGGTACCTTTCGGGAGCAACACCGG
CTGCAAAATCGGTACCCTTATTTCATCCAGAGCTTTTTTGCGACCGATAA
TAGCTCTTTAGAACTACGGGCGACCGTAGATATAGGTTTGGAGCGCTCCT
TTGACGACGAAAGTGATGCTCGAcgccccttctcctcctcgtggaCGAAC
CGCATCAAGAGCAGAGCCGTTTACAACCGATCATTGGACCATTACCAGAC
ATATACAACGTTGGGAGAGAGCATAGAGACTTTCCAAATATTCAATTCTT
GGCAGGGGCCCGCGCCCTGCTACGATAGGGTCCTCGCTGCGCGAAAGGGC
AACATTTATTTGAACCGTTCTACCTATACATGCATTTTCCCGCCCGGTTT
GTCTTTCTGTGGGGATCGGATTTGTAATCAGCTTGGAGTGCCTCTTGATG
ACTCCGAGCCCGACAGATTGAAAGCATCAAAGGTTACTATAGGCCCAAAA
CCTACTTTTAAAATCGCGGAGGATCAGGAGAGAATGAATAAGGAAGCTGG
AACATTGATCGATGATAGTCCATCTACACTTATGCCGCAACTTTCGATTG
AAGCCAAAACTGTGCTGGAAGATACAAGTGATCCCCAAAAATTGACTTTG
GCAGCACTGCATGACCGTGTTAGGCTCGCTAAGCAAGGAGTGAAAAAGTA
A

Synonyms

Publications