rna1578, rna1578 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1578
Unique Name	rna1578
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	981
Alignment location	CM002457.1:977347..980066 +

Link to JBrowse

Properties


Property Name	Value
Product	Alcohol acetyltransferase
Orig transcript id	gnl\|cribi\|Naga_100024g59.4311.mrna
Orig protein id	gnl\|cribi\|Naga_100024g59.4311
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:977347..980066 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100024g59	gene1517	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1578	rna1578-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29053.1	cds1574	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:977347..980066+
coding sequence from alignment at CM002457.1:977347..980066+

mRNA sequence

>rna1578 ID=rna1578|Name=rna1578|organism=Nannochloropsis gaditana|type=mRNA|length=981bp
ATGGCGGGCGGCAAGGATGAGACATACGACTACCTTTTCAAAGTGGTCCT
GATCGGAGATTCCGGGGTCGGAAAATCCAACCTTCTATCGCGTTTCACCC
GCAACGAGTTTAACCTAGAGAGTAAAAGCACGATAGGCGTGGAATTTGCC
ACCAAAAGTATCAAAGCTGCGGACGGAAAAGTCATCAAGGCTCAGATTTG
GGACACAGCGGGGCAGGAGCGGTACCGGGCAATCACCAGCGCCTACTATC
GGGGGGCCGTCGGGGCCCTCCTGGTTTACGATATCTCCAAGCGCGTCACC
TTCGACAACGTGGAGCGCTGGTTGAAAGAGTTACGCGAGCATGCAGATCA
GTCGATCGTGGTGATGTTGGTTGGCAATAAAAGCGACTTGCGGCATTTGC
GGACAGTGCCGACAGAGGATGCCATGCGTTTTGCCGAAGAGAACCGCCTG
GCCTTTATCGAGACCTCCGCTTTGGACGCGTCGGGCGTGGACACGGCCTT
CCACCGGATCCTCACAGAGATTCATTCCTTGCTATCCAAAAAGTCCATGG
CGGGAAATGACGGGGGGTTCGGGCAGGCCATCGGGGTAGGACAGAAGATC
GCCTTATCGAGCAACCCGCCCGCGAACAAGGCGACGGCGAGCTTTCAACA
ATGCTGTAAAGGGAAGGGGACGGAGAAGCTCAGCTTGAAGATTTCTTCGA
GAACTTGCCAGCATTTTACACGGGGGAGCAGAGAGGCTGAACATCGCGAT
ATGCATTCGGGGTTTCTTAGGCGACACGGAGAAGTGAACGCCAGATTGTC
TGGCTTCAGGTTGCATTTCTCGTCTCGAATTGTTGGTGAGTTGGTATGTT
TTGCTCCTCCTCAGCCTTTTTTGGTCCCAGCCTCCATTCCTTCATGTAAA
ATGCGTTGTCTCAAAGCGGCCCGTTATGGGTGGAAAAAATGTAAAAGAAA
AAAGGGCAAGCAAGGAGCTATTTCATGCTGA

protein sequence of rna1578

>rna1578-protein ID=rna1578-protein|Name=rna1578|organism=Nannochloropsis gaditana|type=polypeptide|length=509bp
MPKLTEMCPDFKGDGVVLDHEGSNEKDFTTRSRPLGGFEQFMYNAHRLGC
GLIYMIADLREGSPFLKDTSLMEEALRATVSHHPNLHASISSDGKQLMFQ
PVNKLPPSFFSVPLISGSSAVDVIQEELLTTPIARGERHSPFWQLVLVQN
AKDGKESQSLVALAHHSIMDGESMVLFLNEIIVRTNELLRTRSGVTTHVA
DEAKSPLELSKLSFLPSQDELFDKVLPPTAGDGARGALSYLWRRITWFLR
RPTVPASEGTTRDISHRRNNILSAQIKGSALTLLLRRCHAEHTTVTAALA
AATLLELKRLIPESPRVNLKLETMVNLRRALCQVDQARYKDALQCFAAPI
DTVVTVQENDDLWAHARAYKERLNESMAAGQWKRQVAAFRTFEYGVYGAL
ARMAVTPEIQGRVKAAAISNLGVLSFDSVEDGKGKIGAEEEDPRQNVEGL
RIARLQWGISLHGIGQYAFVAASTQDSSLNLTLTCASPIVSAGRAKRLLD
GIVAHLTQL

mRNA from alignment at CM002457.1:977347..980066+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1578 ID=rna1578|Name=rna1578|organism=Nannochloropsis gaditana|type=mRNA|length=2720bp|location=Sequence derived from alignment at CM002457.1:977347..980066+ (Nannochloropsis gaditana)
GGGCGGCATTCACGGGCATGATTTTGACATAAATCGAACGAAGAAGGAGC
TTCTCCACTTTCCTTTGTCGTTTAAACGTCCCGCCCAACGGTCGCTCCCC
ATATCATCGCTGTGGCCCCAGGAATTCTCGGAATCCACCAATAATAGCGC
GCACTGTGCGTTGAAATTATTGAAAACCTAGCAGACTATTGCAAGTTGAA
TTATGCTACGACATCAGTGAGATTTAAGCAGCAACGATAAAGGGCACAAG
CAAATAGGCAAGTGAGGTCGGGATCCGTTGTCCAGCGCGCGCCTCTTTAC
GAGCCGTATTTTGGGCTAATCGGTCTTTCATTCATTCATATAACAAAATT
TTAAGACTCTAATTTTACTTGTATCCGAAAAGAAGTAATGATCgtgtttc
tccttttccatctttcATACTTACAGGCCTGCGGGGAAGCCTTCGCATTC
GAGTCTCACCTTACGATTATAGTACCGGGAACTCGACAGGCTAGCTATTT
GGACCCCTTTCAAGTCTCAAATTCTAGTACATCTATAGGGTACTTATAGA
TATGCGCATTCGGGCTGTTTTCGTGCAGTATCTTTCAAGATTTGAAGAGA
TAATGGAAAGCAAACGAAGCACTTAGGACGAGCATCGATGCCGAAGCTTA
CCGAGATGTGCCCTGATTTCAAAGGAGATGGCGTAGTACTGGACCATGAA
GGGAGTAATGAGAAAGACTTTACAACTAGGTCGCGTCCTTTGGGTGGGTT
TGAACAGTTTATGTATAATGCTCATCGTTTGGGATGTGGCTTAATCTACA
TGATTGCTGACCTTCGAGAAGGAAGCCCGTTTCTCAAGGACACCAGTCTA
ATGGAAGAGGCATTGCGAGCAACGGTATCTCATCATCCTAATTTGCATGC
ATCTATTTCGTCGGATGGAAAGCAACTGATGTTCCAGCCCGTCAACAAAC
TTCcgccttcttttttttccgtACCTCTTATCTCTGGCTCGTCGGCTGTG
GATGTAATACAAGAGGAGCTGTTGACCACTCCTATCGCCCGAGGTGAACG
TCACAGTCCTTTTTGGCAATTAGTGCTCGTACAAAATGCGAAAgatggga
aagaaagtcAGTCGTTGGTAGCGCTAGCGCACCACAGTATTATGGATGGG
GAGTCCATGGTGCTCTTCTTGAACGAGATTATTGTGCGAACAAATGAGCT
GCTGCGAACGAGATCAGGCGTGACTACTCATGTTGCAGACGAAGCAAAGT
CGCCACTGGAATTGTCAAAGTTGAGTTTTCTCCCATCGCAGGACGAGCTC
TTTGATAAAGTCTTGCCACCAACAGCAGGGGACGGTGCGCGTGGTGCACT
TTCCTACCTGTGGCGACGGATAACCTGGTATGGCTACAAGAGAGGATCGT
AGAATATGACACTTTTCATAGACCCTACTGCTTCGTAGACGAGCTACGTC
ATAACAGTGTTCTTGAATACATTCTCAGGTTTACTAATATACATCTAAAT
ATATATTCTTTTTTTAAAGGTTCTTGAGACGGCCTACCGTTCCAGCCTCT
GAAGGCACCACCCGCGATATTTCCCACCGAAGGAATAATATCCTCTCTGC
ACAAATTAAAGGCTCTGCACTCACCCTACTACTTCGCCGCTGTCACGCCG
AGCATACAACCGTCACAGCGGCCCTGGCAGCCGCCACCCTTCTAGAGCTG
AAACGTCTGATTCCCGAATCACCCAGGGTGAATCTCAAATTGGAAACGAT
GGTGAACCTTCGTAGGGCCCTTTGCCAGGTTGACCAGGCACGGTACAAAG
ACGCCCTGCAATGTTTCGCCGCACCCATAGATACGGTCGTCACCGTCCAG
GAAAATGATGACTTATGGGCACACGCACGCGCTTACAAGGAGCGTTTGAA
TGAATCCATGGCTGCGGGGCAGTGGAAAAGACAGGTCGCCGCTTTTCGGA
CATTTGAGTATGGCGTCTATGGTGCCCTGGCTCGCATGGCCGTGACGCCT
GAGATTCAGGGCCGCGTAAAGGCCGCTGCCATCTCCAATTTAGGGGTCCT
CTCCTTTGATTCTGTGGAAGACGGCAAAGGCAAGATCGgtgccgaggaag
aagacccCCGACAAAATGTTGAAGGGCTAAGGATTGCCAGGTTACAGTGG
GGCATTTCTTTGCACGGCATAGGTCAGTACGCCTTTGTGGCGGCCTCCAC
GCAGGATAGTAGCCTAAACCTGACCCTGACGTGCGCCAGTCCCATTGTCT
CTGCGGGTCGTGCAAAACGTCTTCTTGATGGCATAGTTGCCCATCTGACG
CAATTGTAAGTGACACATGGGCGGTATAGCATTGTAAGCATGAGCACAGA
GCAAGCACGAGGACAGGACAGGATgtgaaagggggggaacaCAGCATTTG
ATCCATTCGGCTCCTTCTGGTTTTGAAGTGAGATCTACAAGGTTGTCGGG
TTCTATTTTGGTCATGAACACACCATTTCTACCTTGGCTATTGCAAGACA
TCTGAAATTGCGATCGGCCCTCGAGCTTCGACATGCTGCTTTCTCAACGT
AAAGGATAACTGATGTTCGTACGCACGTAAAATTGTATATATACCAAGGG
ATGTCATCCGCAACTCTGCGAAATGTTTCCAGGAAAGTCTGACGAATTTT
AAATGAGTTGCTAGAACTCATTGCATTTTCTTTCGACAAATATAACTGCT
CTATCATGGATCCTATCCCC

Coding sequence (CDS) from alignment at CM002457.1:977347..980066+

>rna1578 ID=rna1578|Name=rna1578|organism=Nannochloropsis gaditana|type=CDS|length=3060bp|location=Sequence derived from alignment at CM002457.1:977347..980066+ (Nannochloropsis gaditana)
ATGCCGAAGCTTACCGAGATGTGCCCTGATTTCAAAGGAGATGGCGTAGT
ACTGGACCATGAAGGGAGTAATGAGAAAGACTTTACAACTAGGTCGCGTC
CTTTGGGTGGGTTTGAACAGTTTATGTATAATGCTCATCGTTTGGGATGT
GGCTTAATCTACATGATTGCTGACCTTCGAGAAGGAAGCCCGTTTCTCAA
GGACACCAGTCTAATGGAAGAGGCATTGCGAGCAACGGTATCTCATCATC
CTAATTTGCATGCATCTATTTCGTCGGATGGAAAGCAACTGATGTTCCAG
CCCGTCAACAAACTTCcgccttcttttttttccgtACCTCTTATCTCTGG
CTCGTCGGCTGTGGATGTAATACAAGAGGAGCTGTTGACCACTCCTATCG
CCCGAGGTGAACGTCACAGTCCTTTTTGGCAATTAGTGCTCGTACAAAAT
GCGAAAgatgggaaagaaagtcAGTCGTTGGTAGCGCTAGCGCACCACAG
TATTATGGATGGGGAGTCCATGGTGCTCTTCTTGAACGAGATTATTGTGC
GAACAAATGAGCTGCTGCGAACGAGATCAGGCGTGACTACTCATGTTGCA
GACGAAGCAAAGTCGCCACTGGAATTGTCAAAGTTGAGTTTTCTCCCATC
GCAGGACGAGCTCTTTGATAAAGTCTTGCCACCAACAGCAGGGGACGGTG
CGCGTGGTGCACTTTCCTACCTGTGGCGACGGATAACCTGGTTCTTGAGA
CGGCCTACCGTTCCAGCCTCTGAAGGCACCACCCGCGATATTTCCCACCG
AAGGAATAATATCCTCTCTGCACAAATTAAAGGCTCTGCACTCACCCTAC
TACTTCGCCGCTGTCACGCCGAGCATACAACCGTCACAGCGGCCCTGGCA
GCCGCCACCCTTCTAGAGCTGAAACGTCTGATTCCCGAATCACCCAGGGT
GAATCTCAAATTGGAAACGATGGTGAACCTTCGTAGGGCCCTTTGCCAGG
TTGACCAGGCACGGTACAAAGACGCCCTGCAATGTTTCGCCGCACCCATA
GATACGGTCGTCACCGTCCAGGAAAATGATGACTTATGGGCACACGCACG
CGCTTACAAGGAGCGTTTGAATGAATCCATGGCTGCGGGGCAGTGGAAAA
GACAGGTCGCCGCTTTTCGGACATTTGAGTATGGCGTCTATGGTGCCCTG
GCTCGCATGGCCGTGACGCCTGAGATTCAGGGCCGCGTAAAGGCCGCTGC
CATCTCCAATTTAGGGGTCCTCTCCTTTGATTCTGTGGAAGACGGCAAAG
GCAAGATCGgtgccgaggaagaagacccCCGACAAAATGTTGAAGGGCTA
AGGATTGCCAGGTTACAGTGGGGCATTTCTTTGCACGGCATAGGTCAGTA
CGCCTTTGTGGCGGCCTCCACGCAGGATAGTAGCCTAAACCTGACCCTGA
CGTGCGCCAGTCCCATTGTCTCTGCGGGTCGTGCAAAACGTCTTCTTGAT
GGCATAGTTGCCCATCTGACGCAATTGTAAATGCCGAAGCTTACCGAGAT
GTGCCCTGATTTCAAAGGAGATGGCGTAGTACTGGACCATGAAGGGAGTA
ATGAGAAAGACTTTACAACTAGGTCGCGTCCTTTGGGTGGGTTTGAACAG
TTTATGTATAATGCTCATCGTTTGGGATGTGGCTTAATCTACATGATTGC
TGACCTTCGAGAAGGAAGCCCGTTTCTCAAGGACACCAGTCTAATGGAAG
AGGCATTGCGAGCAACGGTATCTCATCATCCTAATTTGCATGCATCTATT
TCGTCGGATGGAAAGCAACTGATGTTCCAGCCCGTCAACAAACTTCcgcc
ttcttttttttccgtACCTCTTATCTCTGGCTCGTCGGCTGTGGATGTAA
TACAAGAGGAGCTGTTGACCACTCCTATCGCCCGAGGTGAACGTCACAGT
CCTTTTTGGCAATTAGTGCTCGTACAAAATGCGAAAgatgggaaagaaag
tcAGTCGTTGGTAGCGCTAGCGCACCACAGTATTATGGATGGGGAGTCCA
TGGTGCTCTTCTTGAACGAGATTATTGTGCGAACAAATGAGCTGCTGCGA
ACGAGATCAGGCGTGACTACTCATGTTGCAGACGAAGCAAAGTCGCCACT
GGAATTGTCAAAGTTGAGTTTTCTCCCATCGCAGGACGAGCTCTTTGATA
AAGTCTTGCCACCAACAGCAGGGGACGGTGCGCGTGGTGCACTTTCCTAC
CTGTGGCGACGGATAACCTGGTTCTTGAGACGGCCTACCGTTCCAGCCTC
TGAAGGCACCACCCGCGATATTTCCCACCGAAGGAATAATATCCTCTCTG
CACAAATTAAAGGCTCTGCACTCACCCTACTACTTCGCCGCTGTCACGCC
GAGCATACAACCGTCACAGCGGCCCTGGCAGCCGCCACCCTTCTAGAGCT
GAAACGTCTGATTCCCGAATCACCCAGGGTGAATCTCAAATTGGAAACGA
TGGTGAACCTTCGTAGGGCCCTTTGCCAGGTTGACCAGGCACGGTACAAA
GACGCCCTGCAATGTTTCGCCGCACCCATAGATACGGTCGTCACCGTCCA
GGAAAATGATGACTTATGGGCACACGCACGCGCTTACAAGGAGCGTTTGA
ATGAATCCATGGCTGCGGGGCAGTGGAAAAGACAGGTCGCCGCTTTTCGG
ACATTTGAGTATGGCGTCTATGGTGCCCTGGCTCGCATGGCCGTGACGCC
TGAGATTCAGGGCCGCGTAAAGGCCGCTGCCATCTCCAATTTAGGGGTCC
TCTCCTTTGATTCTGTGGAAGACGGCAAAGGCAAGATCGgtgccgaggaa
gaagacccCCGACAAAATGTTGAAGGGCTAAGGATTGCCAGGTTACAGTG
GGGCATTTCTTTGCACGGCATAGGTCAGTACGCCTTTGTGGCGGCCTCCA
CGCAGGATAGTAGCCTAAACCTGACCCTGACGTGCGCCAGTCCCATTGTC
TCTGCGGGTCGTGCAAAACGTCTTCTTGATGGCATAGTTGCCCATCTGAC
GCAATTGTAA

Synonyms

Publications